Eric Westhof

Eric Westhof

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Eric Westhof

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Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.

Biochimie 2019 Sep 8;164:60-69. Epub 2019 Jul 8.

Université de Strasbourg, CNRS, Architecture et Réactivité de L'ARN, UPR 9002, F-67000, Strasbourg, France. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2019.07.003DOI Listing
September 2019

The multiple flavors of GoU pairs in RNA.

J Mol Recognit 2019 Aug 29;32(8):e2782. Epub 2019 Apr 29.

Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology, INSERM, U964, CNRS, UMR7104, Université de Strasbourg, Illkirch, France.

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http://dx.doi.org/10.1002/jmr.2782DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6617799PMC
August 2019

How to fold and protect mitochondrial ribosomal RNA with fewer guanines.

Nucleic Acids Res 2018 11;46(20):10946-10968

Department of Chemistry, Bowling Green State University, Bowling Green, OH 43403, USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky762DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237812PMC
November 2018

Dimerization confers increased stability to nucleases in 5' halves from glycine and glutamic acid tRNAs.

Nucleic Acids Res 2018 09;46(17):9081-9093

Functional Genomics Unit, Institut Pasteur de Montevideo, Montevideo 11400, Uruguay.

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http://dx.doi.org/10.1093/nar/gky495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6158491PMC
September 2018

Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria.

Nucleic Acids Res 2018 08;46(14):7425-7435

Université de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR9002, F-67084, Strasbourg, France.

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http://dx.doi.org/10.1093/nar/gky547DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101523PMC
August 2018

Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families.

Nucleic Acids Res 2018 05;46(8):3841-3851

LRI, Université Paris-Sud, CNRS, Université Paris-Saclay, Bâtiment 650, Orsay cedex 91405, France.

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http://dx.doi.org/10.1093/nar/gky197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5934684PMC
May 2018

Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI.

RNA 2017 12 22;23(12):1788-1795. Epub 2017 Sep 22.

Université de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR 9002, F-67000 Strasbourg, France.

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http://dx.doi.org/10.1261/rna.063008.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5689000PMC
December 2017

Recent Advances in Mitochondrial Aminoacyl-tRNA Synthetases and Disease.

Trends Mol Med 2017 08 14;23(8):693-708. Epub 2017 Jul 14.

Université de Strasbourg, Centre National de la Recherche Scientifique (CNRS) Unité Propre de Recherche 9002, Architecture et Réactivité de l'ARN, 67084 Strasbourg, France.

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http://dx.doi.org/10.1016/j.molmed.2017.06.002DOI Listing
August 2017

A novel double kink-turn module in euryarchaeal RNase P RNAs.

Nucleic Acids Res 2017 Jul;45(12):7432-7440

Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.1093/nar/gkx388DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499556PMC
July 2017

RNA Structure: Advances and Assessment of 3D Structure Prediction.

Annu Rev Biophys 2017 05 30;46:483-503. Epub 2017 Mar 30.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, 67000 Strasbourg, France; email: ,

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http://dx.doi.org/10.1146/annurev-biophys-070816-034125DOI Listing
May 2017

Crystal structures of a group II intron lariat primed for reverse splicing.

Science 2016 12;354(6316)

Group II introns as ribozymes and retrotransposons, Institute for Integrative Biology of the Cell (I2BC), UMR 9198 CNRS, Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), University Paris-Sud, University Paris-Saclay, 1 Avenue de la Terrasse, Bâtiment 26, 91198 Gif-sur-Yvette cedex, France.

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http://dx.doi.org/10.1126/science.aaf9258DOI Listing
December 2016

New Structural Insights into Translational Miscoding.

Trends Biochem Sci 2016 09 30;41(9):798-814. Epub 2016 Jun 30.

Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology, CNRS, UMR7104/INSERM, U964/University of Strasbourg, Strasbourg, France. Electronic address:

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http://dx.doi.org/10.1016/j.tibs.2016.06.001DOI Listing
September 2016

An integrated, structure- and energy-based view of the genetic code.

Nucleic Acids Res 2016 09 22;44(17):8020-40. Epub 2016 Jul 22.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de biologie moléculaire et cellulaire du CNRS, 15 rue René Descartes, 67084 Strasbourg, France

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5041475PMC
http://dx.doi.org/10.1093/nar/gkw608DOI Listing
September 2016

RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database.

Nucleic Acids Res 2016 07 15;44(W1):W562-7. Epub 2016 Apr 15.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de biologie moléculaire et cellulaire du CNRS, 15 Rue Descartes 67000 Strasbourg, France

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http://dx.doi.org/10.1093/nar/gkw251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987871PMC
July 2016

The ribosome prohibits the G•U wobble geometry at the first position of the codon-anticodon helix.

Nucleic Acids Res 2016 07 12;44(13):6434-41. Epub 2016 May 12.

Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology, INSERM, U964; CNRS, UMR7104/University of Strasbourg, 1 rue Laurent Fries, 67404 Illkirch, France

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http://dx.doi.org/10.1093/nar/gkw431DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291260PMC
July 2016

Perspectives and Pitfalls in Nucleic Acids Crystallography.

Authors:
Eric Westhof

Methods Mol Biol 2016 ;1320:3-8

Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire, UPR 9002 CNRS/Université de Strasbourg, 15 Rue René Descartes, Strasbourg, 67084, France,

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http://dx.doi.org/10.1007/978-1-4939-2763-0_1DOI Listing
May 2016

iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications.

Nucleic Acids Res 2016 Apr 1;44(6):2491-500. Epub 2016 Mar 1.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de biologie moléculaire et cellulaire du CNRS, 15 rue René Descartes, 67084, Strasbourg, France

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http://dx.doi.org/10.1093/nar/gkw083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824111PMC
April 2016

Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.

Nat Commun 2016 Jan 21;7:10457. Epub 2016 Jan 21.

Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology, INSERM, U964; CNRS/University of Strasbourg, UMR7104, 1 rue Laurent Fries, BP 10142, Illkirch 67404, France.

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http://dx.doi.org/10.1038/ncomms10457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4736104PMC
January 2016

A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs.

PLoS Comput Biol 2015 Dec 17;11(12):e1004639. Epub 2015 Dec 17.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, Strasbourg, France.

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http://dx.doi.org/10.1371/journal.pcbi.1004639DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683125PMC
December 2015

RNA structure from deep sequencing.

Authors:
Eric Westhof

Nat Biotechnol 2015 Sep;33(9):928-9

Architecture &Reactivity of RNA, University of Strasbourg, Institute of Molecular and Cellular Biology of the CNRS, Strasbourg, France.

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http://dx.doi.org/10.1038/nbt.3338DOI Listing
September 2015

Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score.

Nucleic Acids Res 2015 Jun 4;43(11):5340-51. Epub 2015 May 4.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de biologie moléculaire et cellulaire du CNRS, 15 Rue Descartes, 67000 Strasbourg, France

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http://dx.doi.org/10.1093/nar/gkv446DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477668PMC
June 2015

Structural insights into the translational infidelity mechanism.

Nat Commun 2015 Jun 3;6:7251. Epub 2015 Jun 3.

Biologie Structurale Intégrative, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Université de Strasbourg; CNRS, UMR7104; INSERM, U964, Illkirch 67400, France.

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http://dx.doi.org/10.1038/ncomms8251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468848PMC
June 2015

Twenty years of RNA crystallography.

Authors:
Eric Westhof

RNA 2015 Apr;21(4):486-7

Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, 67084 Strasbourg Cedex, France

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http://dx.doi.org/10.1261/rna.049726.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4371248PMC
April 2015

Using droplet-based microfluidics to improve the catalytic properties of RNA under multiple-turnover conditions.

RNA 2015 Mar 20;21(3):458-69. Epub 2015 Jan 20.

Institut de Science et d'Ingénierie Supramoléculaires (ISIS), CNRS UMR 7006, Université de Strasbourg, 67083 Strasbourg, France Ecole Supérieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI ParisTech), CNRS UMR 8231, 75231 Paris, France

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http://dx.doi.org/10.1261/rna.048033.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338340PMC
March 2015

In-line alignment and Mg²⁺ coordination at the cleavage site of the env22 twister ribozyme.

Nat Commun 2014 Nov 20;5:5534. Epub 2014 Nov 20.

Structural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.

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http://www.nature.com/articles/ncomms6534
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http://dx.doi.org/10.1038/ncomms6534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373348PMC
November 2014

Biogenesis of Circular RNAs.

Cell 2014 Sep;159(1):13-14

Institut de biologie moléculaire et cellulaire du CNRS, Architecture et Réactivité de l'ARN, 67 084 Strasbourg, France. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.09.005DOI Listing
September 2014

Isostericity and tautomerism of base pairs in nucleic acids.

Authors:
Eric Westhof

FEBS Lett 2014 Aug 17;588(15):2464-9. Epub 2014 Jun 17.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire, CNRS, 15 rue René Descartes, 67084 Strasbourg, France. Electronic address:

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http://dx.doi.org/10.1016/j.febslet.2014.06.031DOI Listing
August 2014

Chemistry. Self-assembled RNA nanostructures.

Science 2014 Aug;345(6198):732-3

Institut de biologie moléculaire et cellulaire du CNRS, Architecture et Réactivité de l'ARN, Strasbourg, France.

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http://dx.doi.org/10.1126/science.1257989DOI Listing
August 2014

Recognition of Watson-Crick base pairs: constraints and limits due to geometric selection and tautomerism.

F1000Prime Rep 2014 1;6:19. Epub 2014 Apr 1.

Département de Biologie et de Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire CNRS, INSERM, Université de Strasbourg, F-67400 Illkirch France.

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http://dx.doi.org/10.12703/P6-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974571PMC
June 2014

Speciation of a group I intron into a lariat capping ribozyme.

Proc Natl Acad Sci U S A 2014 May 12;111(21):7659-64. Epub 2014 May 12.

Architecture et Réactivité de l'ARN, Unité Propre de Recherche 9002, Institut de Biologie Moléculaire et Cellulaire, Université de Strasbourg, Centre National de la Recherche Scientifique, 67084 Strasbourg, France;

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http://dx.doi.org/10.1073/pnas.1322248111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4040574PMC
May 2014

A PNPase dependent CRISPR System in Listeria.

PLoS Genet 2014 Jan 9;10(1):e1004065. Epub 2014 Jan 9.

Unité des Interactions Bactéries-Cellules, Institut Pasteur, Paris, France ; INSERM, U604, Paris, France ; INRA, USC2020, Paris, France.

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http://dx.doi.org/10.1371/journal.pgen.1004065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3886909PMC
January 2014

RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core.

EMBO J 2013 Oct 3;32(21):2804-18. Epub 2013 Sep 3.

Department of Cellular Biochemistry, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.

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http://dx.doi.org/10.1038/emboj.2013.198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3817461PMC
October 2013

New structural insights into the decoding mechanism: translation infidelity via a G·U pair with Watson-Crick geometry.

FEBS Lett 2013 Jun 23;587(13):1848-57. Epub 2013 May 23.

Département de Biologie et de Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Université de Strasbourg, Illkirch 67400, France.

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http://dx.doi.org/10.1016/j.febslet.2013.05.009DOI Listing
June 2013

Structure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 Jun 24;69(Pt 6):634-9. Epub 2013 May 24.

Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, 7-1 Kioi-cho, Chiyoda-ku, Tokyo 102-8554, Japan.

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http://dx.doi.org/10.1107/S1744309113013018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668581PMC
June 2013

Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage.

RNA 2013 Feb 21;19(2):257-70. Epub 2012 Dec 21.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1261/rna.036202.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543087PMC
February 2013

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.

Nature 2013 Feb 10;494(7437):385-9. Epub 2013 Feb 10.

Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.

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http://dx.doi.org/10.1038/nature11872DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3659406PMC
February 2013

Loop-loop interactions involved in antisense regulation are processed by the endoribonuclease III in Staphylococcus aureus.

RNA Biol 2012 Dec 7;9(12):1461-72. Epub 2012 Nov 7.

Architecture et Réactivité de l'ARN, Université de Strasbourg, CNRS, Strasbourg, France.

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http://dx.doi.org/10.4161/rna.22710DOI Listing
December 2012

Ribozymes, catalytically active RNA molecules. Introduction.

Authors:
Eric Westhof

Methods Mol Biol 2012 ;848:1-4

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de biologie moléculaire et cellulaire du CNRS, Strasbourg, France.

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http://dx.doi.org/10.1007/978-1-61779-545-9_1DOI Listing
May 2012

Automated prediction of three-way junction topological families in RNA secondary structures.

Comput Biol Chem 2012 Apr 11;37:1-5. Epub 2012 Jan 11.

PRiSM, Univ. de Versailles St-Quentin Versailles, France.

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http://dx.doi.org/10.1016/j.compbiolchem.2011.11.001DOI Listing
April 2012

A structural module in RNase P expands the variety of RNA kinks.

RNA Biol 2012 Mar 1;9(3):254-60. Epub 2012 Mar 1.

Architecture et Réactivité de l'ARN, Université de Strasbourg, IBMC, CNRS, Strasbourg, France.

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http://dx.doi.org/10.4161/rna.19434DOI Listing
March 2012

A new understanding of the decoding principle on the ribosome.

Nature 2012 Mar 21;484(7393):256-9. Epub 2012 Mar 21.

Département de Biologie et de Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch 67400, France.

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http://dx.doi.org/10.1038/nature10913DOI Listing
March 2012

RNA modeling, naturally.

Authors:
Eric Westhof

Proc Natl Acad Sci U S A 2012 Feb 3;109(8):2691-2. Epub 2012 Feb 3.

Architecture et Réactivité de l'ARN, Université de Strasbourg, and Institut de Biologie Moléculaire et Cellulaire du Centre National de la Recherche Scientifique, 67084 Strasbourg, France.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1121363109
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http://dx.doi.org/10.1073/pnas.1121363109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3286913PMC
February 2012

New dimensions of RNA in molecular recognition and catalysis.

Acc Chem Res 2011 Dec;44(12):1255-6

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http://dx.doi.org/10.1021/ar200261eDOI Listing
December 2011

Identification and annotation of noncoding RNAs in Saccharomycotina.

C R Biol 2011 Aug-Sep;334(8-9):671-8. Epub 2011 Jul 6.

Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du CNRS, Université de Strasbourg, 15 rue René-Descartes, 67084 Strasbourg cedex, France.

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http://dx.doi.org/10.1016/j.crvi.2011.05.016DOI Listing
November 2011

Inhibition of aminoglycoside-deactivating enzymes APH(3')-IIIa and AAC(6')-Ii by amphiphilic paromomycin O2''-ether analogues.

ChemMedChem 2011 Nov 8;6(11):1961-6. Epub 2011 Sep 8.

Department of Chemistry, Université de Montréal, C. P. 6128, Succ. Centre-Ville, Montréal, QC, H3C 3J7, Canada.

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http://dx.doi.org/10.1002/cmdc.201100346DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5179253PMC
November 2011

Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide-protein complexes.

Nucleic Acids Res 2011 Oct 7;39(19):8628-37. Epub 2011 Jul 7.

Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, 7-1 Kioi-cho, Chiyoda-ku, 102-8554 Tokyo, Japan.

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http://dx.doi.org/10.1093/nar/gkr452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3201857PMC
October 2011

Metal ion binding to RNA.

Met Ions Life Sci 2011 ;9:1-35

Architecture et Reactivite de l'ARN, Université de Strasbourg, IBMC, CNRS, 15 rue René Descartes, F-67084, Strasbourg, France.

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October 2011

RNase P: at last, the key finds its lock.

RNA 2011 Sep 29;17(9):1615-8. Epub 2011 Jul 29.

Architecture et Réactivité de l’ARN, Institut de Biologie Moléculaire du CNRS, Université de Strasbourg, 67084 Strasbourg Cedex, France.

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http://dx.doi.org/10.1261/rna.2841511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3162327PMC
September 2011

The endless subtleties of RNA-protein complexes.

Structure 2011 Jul;19(7):902-3

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, Strasbourg, France.

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http://linkinghub.elsevier.com/retrieve/pii/S096921261100211
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http://dx.doi.org/10.1016/j.str.2011.06.006DOI Listing
July 2011

Sequence-based identification of 3D structural modules in RNA with RMDetect.

Nat Methods 2011 Jun 8;8(6):513-21. Epub 2011 May 8.

Architecture et Réactivité de l'ARN, Institut de Biologie Moléculaire et Cellulaire du Centre National de la Recherche Scientifique, Université de Strasbourg, Strasbourg, France.

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http://dx.doi.org/10.1038/nmeth.1603DOI Listing
June 2011

Predicting and modeling RNA architecture.

Cold Spring Harb Perspect Biol 2011 Feb 1;3(2). Epub 2011 Feb 1.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, 67084 Strasbourg, France.

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http://dx.doi.org/10.1101/cshperspect.a003632DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039537PMC
February 2011

A quantitative RNA code for mRNA target selection by the germline fate determinant GLD-1.

EMBO J 2011 Feb 17;30(3):533-45. Epub 2010 Dec 17.

Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.

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http://dx.doi.org/10.1038/emboj.2010.334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3034010PMC
February 2011

The RNA structurome: high-throughput probing.

Nat Methods 2010 Dec;7(12):965-7

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http://www.nature.com/articles/nmeth1210-965
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http://dx.doi.org/10.1038/nmeth1210-965DOI Listing
December 2010

The amazing world of bacterial structured RNAs.

Authors:
Eric Westhof

Genome Biol 2010 15;11(3):108. Epub 2010 Mar 15.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, 15 rue René Descartes, Strasbourg, France.

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http://dx.doi.org/10.1186/gb-2010-11-3-108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864558PMC
September 2010

Base pairing constraints drive structural epistasis in ribosomal RNA sequences.

Mol Biol Evol 2010 Aug 8;27(8):1868-76. Epub 2010 Mar 8.

Bioinformatics Research Center (BiRC), Aarhus University, Arhus, Denmark.

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http://dx.doi.org/10.1093/molbev/msq069DOI Listing
August 2010

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels.

Bioinformatics 2010 Aug 18;26(16):2057-9. Epub 2010 Jun 18.

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, Strasbourg, France.

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http://dx.doi.org/10.1093/bioinformatics/btq321DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916716PMC
August 2010

The annotation of RNA motifs.

Comp Funct Genomics 2002 ;3(6):518-24

Chemistry Department and Center for Biomolecular Sciences, Overman Hall, Bowling Green State University, Bowling Green, OH 43403, USA.

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http://dx.doi.org/10.1002/cfg.213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2448414PMC
June 2010

Base pairs and pseudo pairs observed in RNA-ligand complexes.

J Mol Recognit 2010 Mar-Apr;23(2):241-52

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire, CNRS, 15 rue René Descartes, 67084 Strasbourg, France.

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http://dx.doi.org/10.1002/jmr.978DOI Listing
May 2010

Toward atomic accuracy in RNA design.

Authors:
Eric Westhof

Nat Methods 2010 Apr;7(4):272-3

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du Centre National de la Recherche Scientifique, Strasbourg, France.

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http://dx.doi.org/10.1038/nmeth0410-272DOI Listing
April 2010

Visualization of macromolecular structures.

Nat Methods 2010 Mar 1;7(3 Suppl):S42-55. Epub 2010 Mar 1.

European Molecular Biology Laboratory, Heidelberg, Germany.

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http://dx.doi.org/10.1038/nmeth.1427DOI Listing
March 2010

Structure of monomeric yeast and mammalian Sec61 complexes interacting with the translating ribosome.

Science 2009 Dec 29;326(5958):1369-73. Epub 2009 Oct 29.

Gene Center Munich and Center for Integrated Protein Science, Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.

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http://dx.doi.org/10.1126/science.1178535DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920595PMC
December 2009

A pH-responsive riboregulator.

Genes Dev 2009 Nov;23(22):2650-62

Department of Microbiology and Molecular Genetics, IMRIC, The Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel.

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http://dx.doi.org/10.1101/gad.552209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2779765PMC
November 2009

[The atomic structure of the ribosome into the spotlight].

Med Sci (Paris) 2009 Nov;25(11):977-81

Architecture et Réactivité de l'ARN, Université de Strasbourg, CNRS, IBMC, 15, rue René Descartes, 67084 Strasbourg Cedex, France.

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http://dx.doi.org/10.1051/medsci/20092511977DOI Listing
November 2009

New metrics for comparing and assessing discrepancies between RNA 3D structures and models.

RNA 2009 Oct 26;15(10):1875-85. Epub 2009 Aug 26.

Institute for Research in Immunology and Cancer, Department of Computer Science and Operations Research, Université de Montréal, Montréal, Québec, Canada.

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http://dx.doi.org/10.1261/rna.1700409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2743038PMC
October 2009

Molecular adaptation in RNA complexes.

Structure 2009 Jun;17(6):784-6

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire, CNRS, 15 rue René Descartes, 67084 Strasbourg, France.

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http://dx.doi.org/10.1016/j.str.2009.05.005DOI Listing
June 2009

Frequency and isostericity of RNA base pairs.

Nucleic Acids Res 2009 Apr 24;37(7):2294-312. Epub 2009 Feb 24.

Department of Biological Sciences, Bowling Green State University, Bowling Green, OH 43403, USA.

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http://dx.doi.org/10.1093/nar/gkp011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673412PMC
April 2009

The ribozyme core of group II introns: a structure in want of partners.

Trends Biochem Sci 2009 Apr 18;34(4):189-99. Epub 2009 Mar 18.

Centre de Génétique Moléculaire du CNRS, 1 Avenue de la Terrasse, 91190 Gif-sur-Yvette, France.

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http://dx.doi.org/10.1016/j.tibs.2008.12.007DOI Listing
April 2009

The dynamic landscapes of RNA architecture.

Cell 2009 Feb;136(4):604-9

Architecture et Réactivité de l'ARN, Université de Strasbourg, Institut de Biologie Moléculaire et Cellulaire du CNRS, 67084 Strasbourg, France.

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http://dx.doi.org/10.1016/j.cell.2009.02.003DOI Listing
February 2009

The unforeseeable hammerhead ribozyme.

F1000 Biol Rep 2009 Jan 21;1. Epub 2009 Jan 21.

Research Group Molecular Interactions, Department of Genetics, FB 18 Naturwissenschaften, Heinrich-Plett-Str. 40, Universität Kassel, D-34132 Kassel, Germany.

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http://dx.doi.org/10.3410/B1-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920678PMC
January 2009

Toward predicting self-splicing and protein-facilitated splicing of group I introns.

RNA 2008 Oct 3;14(10):2013-29. Epub 2008 Sep 3.

Howard Hughes Medical Institute, University of Colorado, Department of Chemistry and Biochemistry, Boulder, Colorado 80309-0215, USA.

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http://dx.doi.org/10.1261/rna.1027208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553746PMC
October 2008

The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates.

Nucleic Acids Res 2008 May 16;36(8):2654-66. Epub 2008 Mar 16.

Architecture et Réactivité de l'ARN, Université Louis Pasteur, Institut de Biologie Moléculaire et Cellulaire, CNRS, 15 rue René Descartes, 67084 Strasbourg, France.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkn112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2377432PMC
May 2008

Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes.

EMBO J 2008 Feb 24;27(4):667-78. Epub 2008 Jan 24.

Architecture et Réactivité de l'ARN, Université Louis Pasteur de Strasbourg, IBMC, CNRS, Strasbourg, France.

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http://dx.doi.org/10.1038/emboj.2008.4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2219692PMC
February 2008

Searching genomes for ribozymes and riboswitches.

Genome Biol 2007 ;8(4):210

Research Group Molecular Interactions, Department of Genetics, FB 18 Naturwissenschaften, Universität Kassel, Kassel, Germany.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2007-8-4-210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1895996PMC
November 2007

Crystal structure of the bacterial ribosomal decoding site complexed with a synthetic doubly functionalized paromomycin derivative: a new specific binding mode to an a-minor motif enhances in vitro antibacterial activity.

ChemMedChem 2007 Nov;2(11):1631-8

Architecture et Réactivité de l'ARN, Université Louis Pasteur, Institut de Biologie Moléculaire et Cellulaire, CNRS, 15 rue René Descartes, 67084 Strasbourg, France.

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http://dx.doi.org/10.1002/cmdc.200700113DOI Listing
November 2007

Differential selectivity of natural and synthetic aminoglycosides towards the eukaryotic and prokaryotic decoding A sites.

Chembiochem 2007 Sep;8(14):1700-9

Architecture et Réactivité de l'ARN, Université Louis Pasteur, Institut de Biologie Moléculaire et Cellulaire, CNRS, 15 rue René Descartes, 67084 Strasbourg, France.

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http://doi.wiley.com/10.1002/cbic.200700271
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http://dx.doi.org/10.1002/cbic.200700271DOI Listing
September 2007

Crystallographic studies of Homo sapiens ribosomal decoding A site complexed with aminoglycosides.

Nucleic Acids Symp Ser (Oxf) 2005 (49):253-4

Institut de Biologie Moléculaire et Cellulaire, UPR9002 CNRS, Université Louis Pasteur, 15 rue René Descartes, 67084 Strasbourg, France.

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http://dx.doi.org/10.1093/nass/49.1.253DOI Listing
June 2007

RNA structure: bioinformatic analysis.

Curr Opin Microbiol 2007 Jun 4;10(3):279-85. Epub 2007 Jun 4.

Architecture et Réactivité de l'ARN, Université Louis Pasteur, Institut de Biologie Moléculaire et Cellulaire, CNRS, F-67084 Strasbourg, France.

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http://linkinghub.elsevier.com/retrieve/pii/S136952740700057
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http://dx.doi.org/10.1016/j.mib.2007.05.010DOI Listing
June 2007