Publications by authors named "Eric Venner"

15Publications

ARBoR: an identity and security solution for clinical reporting.

J Am Med Inform Assoc 2019 11;26(11):1370-1374

Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.

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https://academic.oup.com/jamia/article/26/11/1370/5523253
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http://dx.doi.org/10.1093/jamia/ocz107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798556PMC
November 2019

UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures.

Nucleic Acids Res 2016 Jan 20;44(D1):D308-12. Epub 2015 Nov 20.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA Department of Structural and Computational Biology and Molecular Biophysics, Houston, TX 77030, USA Computational and Integrative Biomedical Research Center, Baylor College of Medicine, Houston, TX 77030, USA Department of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA

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http://dx.doi.org/10.1093/nar/gkv1279DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702906PMC
January 2016

Accounting for epistatic interactions improves the functional analysis of protein structures.

Bioinformatics 2013 Nov 10;29(21):2714-21. Epub 2013 Sep 10.

Department of Molecular and Human Genetics, CIBR Center for Computational and Integrative Biomedical Research and Program in Structural and Computational Biology & Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030 and Center for Human Genetic Research, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3799481PMC
November 2013

Function prediction from networks of local evolutionary similarity in protein structure.

BMC Bioinformatics 2013 28;14 Suppl 3:S6. Epub 2013 Feb 28.

Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1186/1471-2105-14-S3-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584919PMC
July 2013

A large-scale evaluation of computational protein function prediction.

Authors:
Predrag Radivojac Wyatt T Clark Tal Ronnen Oron Alexandra M Schnoes Tobias Wittkop Artem Sokolov Kiley Graim Christopher Funk Karin Verspoor Asa Ben-Hur Gaurav Pandey Jeffrey M Yunes Ameet S Talwalkar Susanna Repo Michael L Souza Damiano Piovesan Rita Casadio Zheng Wang Jianlin Cheng Hai Fang Julian Gough Patrik Koskinen Petri Törönen Jussi Nokso-Koivisto Liisa Holm Domenico Cozzetto Daniel W A Buchan Kevin Bryson David T Jones Bhakti Limaye Harshal Inamdar Avik Datta Sunitha K Manjari Rajendra Joshi Meghana Chitale Daisuke Kihara Andreas M Lisewski Serkan Erdin Eric Venner Olivier Lichtarge Robert Rentzsch Haixuan Yang Alfonso E Romero Prajwal Bhat Alberto Paccanaro Tobias Hamp Rebecca Kaßner Stefan Seemayer Esmeralda Vicedo Christian Schaefer Dominik Achten Florian Auer Ariane Boehm Tatjana Braun Maximilian Hecht Mark Heron Peter Hönigschmid Thomas A Hopf Stefanie Kaufmann Michael Kiening Denis Krompass Cedric Landerer Yannick Mahlich Manfred Roos Jari Björne Tapio Salakoski Andrew Wong Hagit Shatkay Fanny Gatzmann Ingolf Sommer Mark N Wass Michael J E Sternberg Nives Škunca Fran Supek Matko Bošnjak Panče Panov Sašo Džeroski Tomislav Šmuc Yiannis A I Kourmpetis Aalt D J van Dijk Cajo J F ter Braak Yuanpeng Zhou Qingtian Gong Xinran Dong Weidong Tian Marco Falda Paolo Fontana Enrico Lavezzo Barbara Di Camillo Stefano Toppo Liang Lan Nemanja Djuric Yuhong Guo Slobodan Vucetic Amos Bairoch Michal Linial Patricia C Babbitt Steven E Brenner Christine Orengo Burkhard Rost Sean D Mooney Iddo Friedberg

Nat Methods 2013 Mar 27;10(3):221-7. Epub 2013 Jan 27.

School of Informatics and Computing, Indiana University, Bloomington, Indiana, USA.

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http://dx.doi.org/10.1038/nmeth.2340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584181PMC
March 2013

ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape.

Bioinformatics 2012 Aug 11;28(16):2186-8. Epub 2012 Jun 11.

Departments of Molecular and Human Genetics, Program Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413384PMC
August 2012

Evolutionary trace annotation of protein function in the structural proteome.

J Mol Biol 2010 Mar 28;396(5):1451-73. Epub 2009 Dec 28.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.jmb.2009.12.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2831211PMC
March 2010

Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates.

Bioinformatics 2009 Jun 23;25(11):1426-7. Epub 2009 Mar 23.

Department of Molecular and Human Genetics, Program in Structural and Computational Biology and Molecular, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btp160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682511PMC
June 2009