Publications by authors named "Eric Blanc"

46Publications

Support of a molecular tumour board by an evidence-based decision management system for precision oncology.

Eur J Cancer 2020 03 23;127:41-51. Epub 2020 Jan 23.

Charité Comprehensive Cancer Center, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Charitéplatz 1, 10117, Berlin, Germany; Department of Hematology and Oncology, Campus Benjamin Franklin, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin and Berlin Institute of Health, Hindenburgdamm 30, 12203 Berlin, Germany; Berlin Institute of Health (BIH), Anna-Louisa-Karsch-Straße 2, 10178, Berlin, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2019.12.017DOI Listing
March 2020

Identification and ranking of recurrent neo-epitopes in cancer.

BMC Med Genomics 2019 11 27;12(1):171. Epub 2019 Nov 27.

Core Unit Bioinformatics, Berlin Institute of Health, Charitéplatz 1, Berlin, 10117, Germany.

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http://dx.doi.org/10.1186/s12920-019-0611-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882202PMC
November 2019

SigsPack, a package for cancer mutational signatures.

BMC Bioinformatics 2019 Sep 2;20(1):450. Epub 2019 Sep 2.

Core Unit Bioinformatics, Berlin Institute of Health, Charitéplatz 1, Berlin, 10117, Germany.

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http://dx.doi.org/10.1186/s12859-019-3043-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6720940PMC
September 2019

Tissue-specific transcriptome profiling of reveals roles for GATA transcription factors in longevity by dietary restriction.

NPJ Aging Mech Dis 2018 17;4. Epub 2018 Apr 17.

1Institute of Healthy Ageing, Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT UK.

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http://dx.doi.org/10.1038/s41514-018-0024-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904217PMC
April 2018

Matching Dietary Amino Acid Balance to the In Silico-Translated Exome Optimizes Growth and Reproduction without Cost to Lifespan.

Cell Metab 2017 03;25(3):610-621

Institute of Healthy Ageing and Department of Genetics, Evolution, and Environment, University College London, London WC1E 6BT, UK; Max Planck Institute for Biology of Ageing, Köln 50931, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2017.02.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5355364PMC
March 2017

Dissecting the role of Wnt signaling and its interactions with FGF signaling during midbrain neurogenesis.

Neurogenesis (Austin) 2015 21;2(1):e1057313. Epub 2015 Sep 21.

Craniofacial Development and Stem Cell Biology; King's College London ; London, UK.

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http://dx.doi.org/10.1080/23262133.2015.1057313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4973611PMC
September 2016

A bi-modal function of Wnt signalling directs an FGF activity gradient to spatially regulate neuronal differentiation in the midbrain.

Development 2014 Jan 27;141(1):63-72. Epub 2013 Nov 27.

Craniofacial Development and Stem Cell Biology, King's College London, Guy's Hospital, London SE1 9RT, UK.

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http://dx.doi.org/10.1242/dev.099507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865750PMC
January 2014

A holidic medium for Drosophila melanogaster.

Nat Methods 2014 Jan 17;11(1):100-5. Epub 2013 Nov 17.

1] Institute of Healthy Ageing, Department of Genetics, Evolution and Environment, University College London, London, UK. [2] Max Planck Institute for Biology of Ageing, Köln, Germany.

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http://discovery.ucl.ac.uk/1406814/1/PIPER_et_al_PMC_submiss
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http://www.nature.com/doifinder/10.1038/nmeth.2731
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http://dx.doi.org/10.1038/nmeth.2731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877687PMC
January 2014

Genome-wide transcription analysis of clinal genetic variation in Drosophila.

PLoS One 2012 13;7(4):e34620. Epub 2012 Apr 13.

Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034620PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3326059PMC
August 2012

Tetartohedral twinning could happen to you too.

Acta Crystallogr D Biol Crystallogr 2012 Apr 16;68(Pt 4):418-24. Epub 2012 Mar 16.

Sir William Dunn School of Pathology, Oxford University, South Parks Road, Oxford OX1 3RE, England.

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http://dx.doi.org/10.1107/S0907444912006737DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3322600PMC
April 2012

Polyglutamine Atrophin provokes neurodegeneration in Drosophila by repressing fat.

EMBO J 2011 Mar 28;30(5):945-58. Epub 2011 Jan 28.

Dulbecco Telethon Institute and Division of Neuroscience, DIBIT-San Raffaele Scientific Institute, Milan, Italy.

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http://emboj.embopress.org/cgi/doi/10.1038/emboj.2011.1
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http://dx.doi.org/10.1038/emboj.2011.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3049215PMC
March 2011

Neurons derive from the more apical daughter in asymmetric divisions in the zebrafish neural tube.

Nat Neurosci 2010 Jun 9;13(6):673-9. Epub 2010 May 9.

MRC Centre for Developmental Neurobiology, King's College London, London, UK.

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http://dx.doi.org/10.1038/nn.2547DOI Listing
June 2010

Stratification of co-evolving genomic groups using ranked phylogenetic profiles.

BMC Bioinformatics 2009 Oct 27;10:355. Epub 2009 Oct 27.

The Blavatnik School of Computer Sciences and School of Medicine, Tel-Aviv University, Tel-Aviv 69978, Israel.

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http://dx.doi.org/10.1186/1471-2105-10-355DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775751PMC
October 2009

Dendritic targeting in the leg neuropil of Drosophila: the role of midline signalling molecules in generating a myotopic map.

PLoS Biol 2009 Sep 22;7(9):e1000199. Epub 2009 Sep 22.

Medical Research Council (MRC) Centre for Developmental Neurobiology, King's College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pbio.1000199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2737123PMC
September 2009

Pitfalls of measuring feeding rate in the fruit fly Drosophila melanogaster.

Nat Methods 2008 Mar;5(3):214-215

Centre for Research on Ageing, Department of Biology, Darwin Building, University College London, Gower St, London, WC1E 6BT, UK.

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http://dx.doi.org/10.1038/nmeth0308-214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4335172PMC
March 2008

Estimation and correction of non-specific binding in a large-scale spike-in experiment.

Genome Biol 2007 ;8(6):R126

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1186/gb-2007-8-6-r126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2394775PMC
February 2008

Correcting for sequence biases in present/absent calls.

Genome Biol 2007 ;8(6):R125

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1186/gb-2007-8-6-r125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2394774PMC
February 2008

Erratum to "Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans" [Mech. Ageing Dev. 127 (5) (2006) 458-472].

Mech Ageing Dev 2006 Dec;127(12):922-36

Department of Biology, University College London, Gower Street, London WC1E 6BT, UK.

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http://dx.doi.org/10.1016/j.mad.2006.10.002DOI Listing
December 2006

Automated structure solution with autoSHARP.

Methods Mol Biol 2007 ;364:215-30

Global Phasing Ltd., Sheraton House, Castle Park, Cambridge, UK.

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http://dx.doi.org/10.1385/1-59745-266-1:215DOI Listing
December 2007

Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins.

Genome Biol 2006 9;7(10):R89. Epub 2006 Oct 9.

EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SB, UK.

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http://dx.doi.org/10.1186/gb-2006-7-10-r89DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794571PMC
March 2007

Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans.

Mech Ageing Dev 2006 May 7;127(5):458-72. Epub 2006 Mar 7.

Department of Biology, University College London, UK.

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http://dx.doi.org/10.1016/j.mad.2006.01.006DOI Listing
May 2006

Genome-wide gene expression in response to parasitoid attack in Drosophila.

Genome Biol 2005 31;6(11):R94. Epub 2005 Oct 31.

Centre for Evolutionary Genomics, Department of Biology, University College London, London WC1E 6BT, UK.

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http://dx.doi.org/10.1186/gb-2005-6-11-r94DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1297650PMC
June 2006

Evolutionary and mechanistic relationships between glycosidases acting on alpha- and beta-bonds.

Carbohydr Res 2005 Dec 13;340(18):2728-34. Epub 2005 Oct 13.

Architecture et Fonction des Macromolécules Biologiques, UMR6098, Centre National de la Recherche Scientifique, Universités d'Aix-Marseille I & II, Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France.

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http://dx.doi.org/10.1016/j.carres.2005.09.018DOI Listing
December 2005

Shared transcriptional signature in Caenorhabditis elegans Dauer larvae and long-lived daf-2 mutants implicates detoxification system in longevity assurance.

J Biol Chem 2004 Oct 11;279(43):44533-43. Epub 2004 Aug 11.

Department of Biology, University College London, WC1E 6BT, United Kingdom.

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http://dx.doi.org/10.1074/jbc.M406207200DOI Listing
October 2004

On the interpretation and use of <|E|2>(d*) profiles.

Acta Crystallogr D Biol Crystallogr 2004 Feb 23;60(Pt 2):227-40. Epub 2004 Jan 23.

Global Phasing Ltd, Sheraton House, Castle Park, Cambridge CB3 0AX, England.

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http://dx.doi.org/10.1107/S0907444903025538DOI Listing
February 2004

Why are there so many carbohydrate-active enzyme-related genes in plants?

Trends Plant Sci 2003 Dec;8(12):563-5

Architecture et Fonction des Macromolécules Biologiques, UMR 6098, Centre National de la Recherche Scientifique, Universités Aix-Marseille I and II, 31 Chemin Joseph Aiguier, 13402 Marseille cedex 20, France.

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http://dx.doi.org/10.1016/j.tplants.2003.10.002DOI Listing
December 2003