Eric A Stone

Eric A Stone

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Eric A Stone

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The Prevalence and Impact of Model Violations in Phylogenetic Analysis.

Genome Biol Evol 2019 Sep 19. Epub 2019 Sep 19.

Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.

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http://dx.doi.org/10.1093/gbe/evz193DOI Listing
September 2019

Accuracy of Genomic Prediction for Foliar Terpene Traits in .

G3 (Bethesda) 2018 07 31;8(8):2573-2583. Epub 2018 Jul 31.

Research School of Biology, The Australian National University, Acton ACT 2601, Australia.

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http://dx.doi.org/10.1534/g3.118.200443DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071609PMC
July 2018

Recent progress and open questions in Drosophila dosage compensation.

Fly (Austin) 2015 ;9(1):29-35

a Department of Biological Sciences ; North Carolina State University ; Raleigh , NC USA.

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http://dx.doi.org/10.1080/19336934.2015.1074786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4594421PMC
June 2016

Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites.

Genetics 2016 Feb 29;202(2):427-37. Epub 2015 Dec 29.

Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27695

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http://dx.doi.org/10.1534/genetics.115.177816DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788226PMC
February 2016

Bias-Variance Tradeoffs in Recombination Rate Estimation.

Genetics 2016 Feb;202(2):857-9

Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27612

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http://dx.doi.org/10.1534/genetics.115.185561DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788254PMC
February 2016

Genetic basis of transcriptome diversity in Drosophila melanogaster.

Proc Natl Acad Sci U S A 2015 Nov 19;112(44):E6010-9. Epub 2015 Oct 19.

Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695; Program in Genetics, North Carolina State University, Raleigh, NC 27695; W. M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, NC 27695

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http://dx.doi.org/10.1073/pnas.1519159112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4640795PMC
November 2015

No evidence for a global male-specific lethal complex-mediated dosage compensation contribution to the demasculinization of the Drosophila melanogaster X chromosome.

PLoS One 2014 5;9(8):e103659. Epub 2014 Aug 5.

Program in Genetics, North Carolina State University, Raleigh, North Carolina, United States of America; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0103659PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4122499PMC
April 2015

Enhanced diversity and aflatoxigenicity in interspecific hybrids of Aspergillus flavus and Aspergillus parasiticus.

Mol Ecol 2015 Apr 6;24(8):1889-909. Epub 2015 Apr 6.

Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.

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http://dx.doi.org/10.1111/mec.13153DOI Listing
April 2015

X-to-autosome expression and msl-2 transcript abundance correlate among Drosophila melanogaster somatic tissues.

PeerJ 2015 17;3:e771. Epub 2015 Feb 17.

Department of Biological Sciences, North Carolina State University , Raleigh, NC , USA.

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https://peerj.com/articles/771
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http://dx.doi.org/10.7717/peerj.771DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338770PMC
March 2015

Structural properties of the minimum cut of partially-supplied graphs.

Discrete Appl Math 2014 Nov;117:152-157

Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695-7566, USA ; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7614, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S0166218X140025
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http://dx.doi.org/10.1016/j.dam.2014.05.043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4228376PMC
November 2014

Predictor performance with stratified data and imbalanced classes.

Authors:
Eric A Stone

Nat Methods 2014 Aug;11(8):782-3

1] Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA. [2] Department of Statistics, North Carolina State University, Raleigh, North Carolina, USA. [3] Bioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, USA.

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http://www.nature.com/articles/nmeth.3045
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http://dx.doi.org/10.1038/nmeth.3045DOI Listing
August 2014

Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits.

Nat Commun 2014 Jul 8;5:4338. Epub 2014 Jul 8.

Department of Biological Sciences, University of Maryland, Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250, USA.

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http://www.nature.com/articles/ncomms5338
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http://dx.doi.org/10.1038/ncomms5338DOI Listing
July 2014

Sexuality generates diversity in the aflatoxin gene cluster: evidence on a global scale.

PLoS Pathog 2013 29;9(8):e1003574. Epub 2013 Aug 29.

Southern Regional Research Center, Agricultural Research Service, United States Department of Agriculture, New Orleans, Louisiana, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1003574DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3757046PMC
March 2014

Population genomic analysis reveals no evidence for GC-biased gene conversion in Drosophila melanogaster.

Mol Biol Evol 2014 Feb 9;31(2):425-33. Epub 2013 Nov 9.

Department of Biological Sciences, Program in Genetics, North Carolina State University.

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http://dx.doi.org/10.1093/molbev/mst220DOI Listing
February 2014

Fine-scale heterogeneity in crossover rate in the garnet-scalloped region of the Drosophila melanogaster X chromosome.

Genetics 2013 Jun 14;194(2):375-87. Epub 2013 Feb 14.

Department of Genetics, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1534/genetics.112.146746DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664848PMC
June 2013

Genomic variation and its impact on gene expression in Drosophila melanogaster.

PLoS Genet 2012 15;8(11):e1003055. Epub 2012 Nov 15.

Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.

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http://dx.doi.org/10.1371/journal.pgen.1003055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499359PMC
May 2013

Phenotypic plasticity of the Drosophila transcriptome.

PLoS Genet 2012 29;8(3):e1002593. Epub 2012 Mar 29.

Department of Biology, North Carolina State University, Raleigh, North Carolina, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002593DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315458PMC
September 2012

Age-specific variation in immune response in Drosophila melanogaster has a genetic basis.

Genetics 2012 Jul 2;191(3):989-1002. Epub 2012 May 2.

Department of Biological Sciences, University of Maryland, Baltimore, MD 21250, USA.

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http://dx.doi.org/10.1534/genetics.112.140640DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3389989PMC
July 2012

Joint genotyping on the fly: identifying variation among a sequenced panel of inbred lines.

Authors:
Eric A Stone

Genome Res 2012 May 23;22(5):966-74. Epub 2012 Feb 23.

Department of Genetics and Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27603, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.129122.111
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http://dx.doi.org/10.1101/gr.129122.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337441PMC
May 2012

Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis.

Mol Ecol 2012 Mar 29;21(6):1453-76. Epub 2011 Dec 29.

Department of Plant Pathology, Center for Integrated Fungal Research, North Carolina State University, Raleigh, NC 27695, USA.

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http://carbonelab.org/system/files/Olarte_et_al_2011_DOI.pdf
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http://doi.wiley.com/10.1111/j.1365-294X.2011.05398.x
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http://dx.doi.org/10.1111/j.1365-294X.2011.05398.xDOI Listing
March 2012

Participation of brainstem monoaminergic nuclei in behavioral depression.

Pharmacol Biochem Behav 2011 Dec 26;100(2):330-9. Epub 2011 Aug 26.

Department of Psychiatry, New York University Langone School of Medicine, 550 First Ave, New York, NY 10016, United States.

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http://dx.doi.org/10.1016/j.pbb.2011.08.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3199359PMC
December 2011

Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks.

Genet Res (Camb) 2011 Dec;93(6):387-95

Department of Genetics, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1017/S0016672311000346DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925343PMC
December 2011

The non-random clustering of non-synonymous substitutions and its relationship to evolutionary rate.

BMC Genomics 2011 Aug 16;12:415. Epub 2011 Aug 16.

Graduate program in Bioinformatics, North Carolina State University, Raleigh, NC 27695-7566, USA.

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http://dx.doi.org/10.1186/1471-2164-12-415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176261PMC
August 2011

Further evidence for an immediate antidepressant action of intracerebral drug administration in a model of chronic depression.

Int J Neuropsychopharmacol 2011 Jun 29;14(5):691-6. Epub 2010 Sep 29.

New York University Langone School of Medicine, Department of Psychiatry, 550 First Ave, New York, NY, USA.

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https://academic.oup.com/ijnp/article-lookup/doi/10.1017/S14
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http://dx.doi.org/10.1017/S1461145710001161DOI Listing
June 2011

The role of the central noradrenergic system in behavioral inhibition.

Brain Res Rev 2011 Jun 5;67(1-2):193-208. Epub 2011 Mar 5.

Department of Psychiatry, New York University Langone School of Medicine, 550 First Ave., New York, NY 10016, USA.

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http://dx.doi.org/10.1016/j.brainresrev.2011.02.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3101301PMC
June 2011

Why the phylogenetic regression appears robust to tree misspecification.

Authors:
Eric A Stone

Syst Biol 2011 May 15;60(3):245-60. Epub 2011 Feb 15.

Department of Genetics, North Carolina State University, Raleigh, NC 27695-8203, USA. eric

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https://academic.oup.com/sysbio/article/60/3/245/1664624
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http://dx.doi.org/10.1093/sysbio/syq098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3078421PMC
May 2011

Antidepressant-like action of intracerebral 6-fluoronorepinephrine, a selective full α-adrenoceptor agonist.

Int J Neuropsychopharmacol 2011 Apr 12;14(3):319-31. Epub 2010 May 12.

Department of Psychiatry, New York University Langone School of Medicine, New York, NY 10016, USA.

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https://academic.oup.com/ijnp/article-lookup/doi/10.1017/S14
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http://dx.doi.org/10.1017/S1461145710000507DOI Listing
April 2011

Open-space forced swim model of depression for mice.

Curr Protoc Neurosci 2011 Jan;Chapter 9:Unit9.36

Department of Psychiatry, New York University Langone School of Medicine, New York, New York, USA.

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http://doi.wiley.com/10.1002/0471142301.ns0936s54
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http://dx.doi.org/10.1002/0471142301.ns0936s54DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3079197PMC
January 2011

Issues in combining the categorical and visual analog scale for the assessment of perceived thermal sensation: methodological and conceptual considerations.

Appl Ergon 2010 Mar 19;41(2):282-90. Epub 2009 Aug 19.

Environmental Ergonomics Laboratory, Department of Ergonomics, Faculty of Design, Kyushu University, Minami-ku, Fukuoka, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S000368700900104
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http://dx.doi.org/10.1016/j.apergo.2009.07.007DOI Listing
March 2010

Individual variation in pheromone response correlates with reproductive traits and brain gene expression in worker honey bees.

PLoS One 2010 Feb 9;5(2):e9116. Epub 2010 Feb 9.

Department of Genetics, North Carolina State University, Raleigh, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0009116PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2817734PMC
February 2010

ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses.

Genome Res 2010 Jan 21;20(1):142-54. Epub 2009 Oct 21.

Stanford University School of Medicine, Departments of Pathology and Genetics, Stanford, California 94305, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.097121.109
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http://dx.doi.org/10.1101/gr.097121.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798826PMC
January 2010

Alcohol sensitivity in Drosophila: translational potential of systems genetics.

Genetics 2009 Oct 3;183(2):733-45, 1SI-12SI. Epub 2009 Aug 3.

Department of Biology, W. M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, NC 27695, USA.

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http://dx.doi.org/10.1534/genetics.109.107490DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2766331PMC
October 2009

Plasticity of the chemoreceptor repertoire in Drosophila melanogaster.

PLoS Genet 2009 Oct 9;5(10):e1000681. Epub 2009 Oct 9.

Department of Biology, North Carolina State University, Raleigh, North Carolina, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000681DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2750752PMC
October 2009

Marked behavioral activation from inhibitory stimulation of locus coeruleus alpha1-adrenoceptors by a full agonist.

Brain Res 2009 Sep 24;1291:21-31. Epub 2009 Jul 24.

Department of Psychiatry, New York University Langone School of Medicine, 550 First Ave, New York, NY 10016, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S000689930901470
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http://dx.doi.org/10.1016/j.brainres.2009.07.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735576PMC
September 2009

The genetics of quantitative traits: challenges and prospects.

Nat Rev Genet 2009 Aug;10(8):565-77

Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695, USA.

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http://dx.doi.org/10.1038/nrg2612DOI Listing
August 2009

Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci.

Gene 2009 Jul 29;441(1-2):45-52. Epub 2008 Jul 29.

Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695-7566, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S037811190800326
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http://dx.doi.org/10.1016/j.gene.2008.07.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2715921PMC
July 2009

Modulated modularity clustering as an exploratory tool for functional genomic inference.

PLoS Genet 2009 May 8;5(5):e1000479. Epub 2009 May 8.

Department of Statistics, North Carolina State University, Raleigh, NC, USA.

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http://dx.plos.org/10.1371/journal.pgen.1000479
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http://dx.doi.org/10.1371/journal.pgen.1000479DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673040PMC
May 2009

Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep.

Nat Genet 2009 Mar 22;41(3):371-5. Epub 2009 Feb 22.

Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695, USA.

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http://dx.doi.org/10.1038/ng.330DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683981PMC
March 2009

Warm or slightly hot? Differences in linguistic dimensions describing perceived thermal sensation.

J Physiol Anthropol 2009 Jan;28(1):37-41

Department of Ergonomics, Faculty of Design, Kyushu University, Minami-ku, Fukuoka 815-8540, Japan.

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January 2009

Evaluation of the repeated open-space swim model of depression in the mouse.

Pharmacol Biochem Behav 2008 Nov 19;91(1):190-5. Epub 2008 Jul 19.

Department of Psychiatry, New York University School of Medicine, 550 First Avenue, New York, NY 10016, USA.

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http://dx.doi.org/10.1016/j.pbb.2008.07.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2566635PMC
November 2008

Does wearing thermal underwear in mild cold affect skin temperatures and perceived thermal sensation in the hands and feet of the elderly?

J Physiol Anthropol 2008 Nov;27(6):301-8

Department of Ergonomics, Faculty of Design, Kyushu University, Minami-ku, Fukuoka, Japan.

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November 2008

Visual analog scales for assessment of thermal perception in different environments.

Aviat Space Environ Med 2008 Aug;79(8):784-6

Department of Psychology, Laboratory for Health and Human Performance in Extreme Environments, University of Minnesota, Elliott Hall, 75 E. River Rd., Minneapolis, MN 55455, USA.

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August 2008

Possible dopaminergic stimulation of locus coeruleus alpha1-adrenoceptors involved in behavioral activation.

Synapse 2008 Jul;62(7):516-23

Department of Psychiatry, New York University School of Medicine, New York, New York 10016, USA.

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http://dx.doi.org/10.1002/syn.20517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2754581PMC
July 2008

A final common pathway for depression? Progress toward a general conceptual framework.

Neurosci Biobehav Rev 2008 10;32(3):508-24. Epub 2007 Oct 10.

Department of Psychiatry, New York University School of Medicine, New York, NY 10016, USA.

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http://dx.doi.org/10.1016/j.neubiorev.2007.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2265074PMC
May 2008

Mixture modeling of transcript abundance classes in natural populations.

Genome Biol 2007 ;8(6):R98

Department of Genetics, Gardner Hall, North Carolina State University, Raleigh, North Carolina 27695-7614, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2007-8-6-r98DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2394757PMC
February 2008

An anti-immobility effect of exogenous corticosterone in mice.

Eur J Pharmacol 2008 Feb 25;580(1-2):135-42. Epub 2007 Oct 25.

Department of Psychiatry, New York University School of Medicine, 550 First Ave, New York, NY 10016, USA.

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http://dx.doi.org/10.1016/j.ejphar.2007.10.045DOI Listing
February 2008

Reduced evoked fos expression in activity-related brain regions in animal models of behavioral depression.

Prog Neuropsychopharmacol Biol Psychiatry 2007 Aug 24;31(6):1196-207. Epub 2007 Apr 24.

Department of Psychiatry, New York University School of Medicine, 550 First Ave, New York, NY 10016, United States.

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http://linkinghub.elsevier.com/retrieve/pii/S027858460700143
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http://dx.doi.org/10.1016/j.pnpbp.2007.04.010DOI Listing
August 2007

A final common pathway for depression: implications for therapy.

Authors:
Eric A Stone

Expert Opin Ther Targets 2007 Aug;11(8):1019-32

Psychiatry, MHL HN510, NYU Medical Centre, New York, NY 10016, USA.

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http://www.tandfonline.com/doi/full/10.1517/14728222.11.8.10
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http://dx.doi.org/10.1517/14728222.11.8.1019 DOI Listing
August 2007

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Genome Res 2007 Jun;17(6):760-74

Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://mendel.stanford.edu/sidowlab/pdfs/2007EncodeGR.pdf
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http://www.genome.org/cgi/doi/10.1101/gr.6034307
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http://dx.doi.org/10.1101/gr.6034307DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891336PMC
June 2007

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

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BMC Bioinformatics 2007 Jun 26;8:222. Epub 2007 Jun 26.

Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695-7566, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-8-222DOI Listing
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June 2007

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Neuropsychopharmacology 2007 Apr 5;32(4):835-41. Epub 2006 Jul 5.

Department of Psychiatry, New York University School of Medicine, New York University Medical Center, New York, NY 10016, USA.

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April 2007

Central alpha1-adrenergic system in behavioral activity and depression.

Biochem Pharmacol 2007 Apr 5;73(8):1063-75. Epub 2006 Oct 5.

New York University School of Medicine, Department of Psychiatry, NYU Medical Center, MHL HN510, 550 First Avenue, New York, NY 10016, USA.

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April 2007

Depressive behavior in mice due to immune stimulation is accompanied by reduced neural activity in brain regions involved in positively motivated behavior.

Biol Psychiatry 2006 Oct 30;60(8):803-11. Epub 2006 Jun 30.

Department of Psychiatry, New York University School of Medicine, New York, New York 10016, USA.

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October 2006

Role of CNS alpha1-adrenoceptor activity in central fos responses to novelty.

Synapse 2006 Apr;59(5):299-307

Department of Psychiatry, New York University School of Medicine, New York, New York 10016, USA.

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April 2006

Trade-offs in detecting evolutionarily constrained sequence by comparative genomics.

Annu Rev Genomics Hum Genet 2005 ;6:143-64

Department of Statistics, Stanford University, Stanford, California 94305, USA.

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Psychopharmacology (Berl) 2005 Nov 22;183(1):127-32. Epub 2005 Oct 22.

Department of Psychiatry, New York University School of Medicine, 550 First Ave., New York, NY, 10016, USA.

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November 2005

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Genome Res 2005 Jul 17;15(7):901-13. Epub 2005 Jun 17.

Department of Genetics, Stanford University, Stanford, California 94305, USA.

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July 2005

Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity.

Genome Res 2005 Jul 17;15(7):978-86. Epub 2005 Jun 17.

Department of Statistics, Stanford University, Stanford, California 94305-5324, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.3804205
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July 2005

Evidence of roles of central alpha1-adrenoceptors and epinephrine in orexin A-induced hyperactivity in mice.

Neurosci Lett 2005 Jun;381(3):325-8

Department of Psychiatry, New York University School of Medicine, MHL-HN510, NYU Med Centre, 550 First Avenue, New York, NY 10016, USA.

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June 2005

Phenotype-genotype correlation in Hirschsprung disease is illuminated by comparative analysis of the RET protein sequence.

Proc Natl Acad Sci U S A 2005 Jun 13;102(25):8949-54. Epub 2005 Jun 13.

McKusick-Nathans Institute of Genetic Medicine and Department of Comparative Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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June 2005

Rate-dependent behavioral effects of stimulation of central motoric alpha(1)-adrenoceptors: hypothesized relation to depolarization blockade.

Psychopharmacology (Berl) 2005 Mar 12;178(2-3):109-14. Epub 2005 Jan 12.

Department of Psychiatry MHL HN510, NYU Med Ctr, 550 First Ave, New York, NY 10016, USA.

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http://link.springer.com/10.1007/s00213-004-2125-y
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March 2005

Role of locus coeruleus alpha1-adrenoceptors in motor activity in rats.

Synapse 2004 Dec;54(3):164-72

Department of Psychiatry, New York University School of Medicine, New York, New York 10016, USA.

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December 2004

Gross mapping of alpha1-adrenoceptors that regulate behavioral activation in the mouse brain.

Behav Brain Res 2004 Jul;152(2):167-75

Department of Psychiatry, New York, NY 10016, USA.

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July 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
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Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Characterization of evolutionary rates and constraints in three Mammalian genomes.

Genome Res 2004 Apr;14(4):539-48

Department of Genetics, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1101/gr.2034704DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383297PMC
April 2004

Immobility from administration of the alpha1-adrenergic antagonist, terazosin, in the IVth ventricle in rats.

Neurosci Lett 2003 Dec;353(3):231-3

Department of Psychiatry, Psychiatry MHL HN510, New York University School of Medicine, 550 First Avenue, New York, NY 10016, USA.

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http://dx.doi.org/10.1016/j.neulet.2003.09.033DOI Listing
December 2003

Emerging evidence for a central epinephrine-innervated alpha 1-adrenergic system that regulates behavioral activation and is impaired in depression.

Neuropsychopharmacology 2003 Aug 18;28(8):1387-99. Epub 2003 Jun 18.

Departments of Psychiatry and Neurology, New York University School of Medicine, NYU Medical Center, 550 First Avenue, New York, NY 10016, USA.

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http://www.nature.com/articles/1300222
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August 2003

Role of epinephrine stimulation of CNS alpha1-adrenoceptors in motor activity in mice.

Synapse 2003 Jul;49(1):67-76

Department of Psychiatry, New York University School of Medicine, New York, New York 10016, USA.

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http://dx.doi.org/10.1002/syn.10212DOI Listing
July 2003

Role of brain alpha 1B-adrenoceptors in modafinil-induced behavioral activity.

Synapse 2002 Dec;46(4):269-70

New York University School of Medicine, New York, New York 10016, USA.

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http://dx.doi.org/10.1002/syn.10127DOI Listing
December 2002

Stress-induced subsensitivity to modafinil and its prevention by corticosteroids.

Pharmacol Biochem Behav 2002 Nov;73(4):971-8

Department of Psychiatry, TH HN510, School of Medicine, New York University Medical Center, 550 First Avenue, New York, NY 10016, USA.

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http://dx.doi.org/10.1016/s0091-3057(02)00962-0DOI Listing
November 2002

Inference of functional regions in proteins by quantification of evolutionary constraints.

Proc Natl Acad Sci U S A 2002 Mar;99(5):2912-7

Program in Cancer Biology and Department of Pathology, Stanford University Medical School, Stanford, CA 94305-5324, USA.

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http://dx.doi.org/10.1073/pnas.042692299DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC122447PMC
March 2002