Enis Afgan

Enis Afgan

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Enis Afgan

Enis Afgan

Publications by authors named "Enis Afgan"

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Cloud bursting galaxy: federated identity and access management.

Bioinformatics 2020 Jan;36(1):1-9

Department of Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6956780PMC
January 2020

Bio-Docklets: virtualization containers for single-step execution of NGS pipelines.

Gigascience 2017 08;6(8):1-7

Center for Translational and Basic Research and Belfer Research Building, Hunter College of The City University of New York, 413 E 69th St, New York, NY 10021.

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http://dx.doi.org/10.1093/gigascience/gix048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5569920PMC
August 2017

BioBlend.objects: metacomputing with Galaxy.

Bioinformatics 2014 Oct 12;30(19):2816-7. Epub 2014 Jun 12.

CRS4, Polaris, 09010 Pula (CA), Università degli Studi di Cagliari, via Università 40, 09124 Cagliari, Italy and Ruđer Bošković Institute, 10000 Zagreb, Croatia.

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http://dx.doi.org/10.1093/bioinformatics/btu386DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4173020PMC
October 2014

BioBlend: automating pipeline analyses within Galaxy and CloudMan.

Bioinformatics 2013 Jul 28;29(13):1685-6. Epub 2013 Apr 28.

Victorian Life Sciences Computation Initiative, University of Melbourne, Melbourne, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btt199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4288140PMC
July 2013

Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study.

Genome Biol 2011 23;12(6):R59. Epub 2011 Jun 23.

The Huck Institutes of Life Sciences and Department of Biology, Penn State University, 305 Wartik Lab, University Park, PA 16802, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2011-12-6-r59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218847PMC
December 2012

CloudMan as a platform for tool, data, and analysis distribution.

BMC Bioinformatics 2012 Nov 27;13:315. Epub 2012 Nov 27.

Center for Informatics and Computing (CIR), Ruđer Bošković Institute (RBI), Zagreb, Croatia.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-13-315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3556322PMC
November 2012

Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy.

Curr Protoc Bioinformatics 2012 Jun;Chapter 11:Unit11.9

Center for Informatics and Computing, Ruder Bošković Institute (RBI), Zagreb, Croatia.

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http://dx.doi.org/10.1002/0471250953.bi1109s38DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3412548PMC
June 2012

Galaxy CloudMan: delivering cloud compute clusters.

BMC Bioinformatics 2010 Dec 21;11 Suppl 12:S4. Epub 2010 Dec 21.

Department of Biology, Emory University, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.1186/1471-2105-11-S12-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040530PMC
December 2010