Publications by authors named "Emanuele Raineri"

25Publications

Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks.

Nucleic Acids Res 2020 05;48(8):4066-4080

Centre de Recherches en Cancérologie de Toulouse (CRCT), INSERM U1037, Toulouse 31037, France.

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May 2020

Recurrent somatic mutations reveal new insights into consequences of mutagenic processes in cancer.

PLoS Comput Biol 2019 11 25;15(11):e1007496. Epub 2019 Nov 25.

CNAG-CRG, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.

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November 2019

The neutral frequency spectrum of linked sites.

Theor Popul Biol 2018 09 28;123:70-79. Epub 2018 Jun 28.

Institut de Systématique, Evolution, Biodiversité, UMR 7205, MNHN and Centre Interdisciplinaire de Recherche en Biologie, UMR 7241, Collége de France, Paris, France.

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September 2018

Distinct Trends of DNA Methylation Patterning in the Innate and Adaptive Immune Systems.

Cell Rep 2016 11;17(8):2101-2111

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, Barcelona 08028, Spain; Universitat Pompeu Fabra (UPF), Barcelona 08002, Spain. Electronic address:

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November 2016

A novel translational control mechanism involving RNA structures within coding sequences.

Genome Res 2017 01 7;27(1):95-106. Epub 2016 Nov 7.

Molecular Virology Group, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, 08003 Barcelona, Spain.

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January 2017

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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December 2015

A note on exact differences between beta distributions in genomic (Methylation) studies.

PLoS One 2014 13;9(5):e97349. Epub 2014 May 13.

Statistical Genomics, Centro Nacional de Análisis Genómico, Barcelona, Catalonia, Spain.

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December 2014

SNP calling by sequencing pooled samples.

BMC Bioinformatics 2012 Sep 20;13:239. Epub 2012 Sep 20.

Centro Nacional de Análisis Genómico, Parc Científic de Barcelona, Barcelona, 08028, Spain.

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September 2012

Modelling and simulating generic RNA-Seq experiments with the flux simulator.

Nucleic Acids Res 2012 Nov 7;40(20):10073-83. Epub 2012 Sep 7.

Bioinformatics and Genomics Program, Centre de Regulació Genòmica (CRG), 08003 Barcelona, Spain.

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November 2012

Neutrality tests for sequences with missing data.

Genetics 2012 Aug 1;191(4):1397-401. Epub 2012 Jun 1.

Centre for Research in Agricultural Genomics, 08193 Bellaterra, Spain.

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August 2012

Fast computation and applications of genome mappability.

PLoS One 2012 19;7(1):e30377. Epub 2012 Jan 19.

Institut de Génétique et Développement (IGDR), Université Rennes 1, Rennes, France.

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June 2012

BlastR--fast and accurate database searches for non-coding RNAs.

Nucleic Acids Res 2011 Sep 30;39(16):6886-95. Epub 2011 May 30.

Bioinformatics and Genomics program, Center for Genomic Regulation (CRG) and UPF, Barcelona, C/ D. Aiguader, 88, 08003 Barcelona, Spain.

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September 2011

A more precise characterization of chaperonin substrates.

Bioinformatics 2010 Jul 2;26(14):1685-9. Epub 2010 Jun 2.

CNAG Centro Nacional de Análisis Genómico, Parc Cientific de Barcelona, Baldiri Reixac 4, E-08028 Barcelona, Spain.

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July 2010

Faster exact Markovian probability functions for motif occurrences: a DFA-only approach.

Bioinformatics 2008 Dec 9;24(24):2839-48. Epub 2008 Oct 9.

Bioinformatics and Genomics Unit, Center for Genomic Regulation, C/ Dr.Aiguader 88, E08003 Barcelona, Spain.

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December 2008

Evolvability and hierarchy in rewired bacterial gene networks.

Nature 2008 Apr;452(7189):840-5

EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain.

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April 2008