Publications by authors named "Ella Thompson"

60Publications

Comparing the performance of two social risk screening tools in a vulnerable subpopulation.

Authors:
Cara C Lewis Robert Wellman Salene M W Jones Callie Walsh-Bailey Ella Thompson Alphonse Derus Andrea Paolino John Steiner Emilia H De Marchis Laura M Gottlieb Adam L Sharp

J Family Med Prim Care 2020 Sep 30;9(9):5026-5034. Epub 2020 Sep 30.

Kaiser Permanent Southern California, Research and Evaluation Department, 100 S Los Robles Ave, Pasadena, CA 91101 Pasadena, CA, USA.

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September 2020

Safer use of antipsychotics in youth (SUAY) pragmatic trial protocol.

Authors:
Robert B Penfold Ella E Thompson Robert J Hilt Kelly J Kelleher Nadine Schwartz Arne Beck Gregory N Clarke James D Ralston Andrea L Hartzler R Yates Coley Mary Akosile Benedetto Vitiello Gregory E Simon

Contemp Clin Trials 2020 Dec 20;99:106184. Epub 2020 Oct 20.

Kaiser Permanente Washington Health Research Institute, Seattle, WA, USA.

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December 2020

Clonal independence of and or mutations in comutated myeloproliferative neoplasms demonstrated by single cell DNA sequencing.

Authors:
Ella R Thompson Tamia Nguyen Yamuna Kankanige Paul Yeh Michael Ingbritsen Michelle McBean Timothy Semple Gisela Mir Arnau Kate Burbury Nora Lee Amit Khot David Westerman Piers Blombery

Haematologica 2021 01 1;106(1):313-315. Epub 2021 Jan 1.

Pathology, Oncology and Clinical Haematology, Peter MacCallum Cancer Centre, Melbourne.

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January 2021

Publisher Correction: CNspector: a web-based tool for visualisation and clinical diagnosis of copy number variation from next generation sequencing.

Authors:
John F Markham Satwica Yerneni Georgina L Ryland Huei San Leong Andrew Fellowes Ella R Thompson Wasanthi De Silva Amit Kumar Richard Lupat Jason Li Jason Ellul Stephen Fox Michael Dickinson Anthony T Papenfuss Piers Blombery

Sci Rep 2020 Jun 23;10(1):10400. Epub 2020 Jun 23.

Department of Pathology, Peter MacCallum Cancer Centre, Parkville, VIC, Australia.

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June 2020

A synonymous GATA2 variant underlying familial myeloid malignancy with striking intrafamilial phenotypic variability.

Authors:
Lucy C Fox Michelle Tan Anna L Brown Peer Arts Ella Thompson Georgina L Ryland Jennifer Lickiss Hamish S Scott Nicola K Poplawski Kerry Phillips Neil A Came Paul James Stephen B Ting David S Ritchie Jeff Szer Christopher N Hahn Anthony Schwarer Piers Blombery

Br J Haematol 2020 Sep 3;190(5):e297-e301. Epub 2020 Jun 3.

Department of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.

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September 2020

Detection of an IGH- fusion in a patient with BRAF Val600Glu negative hairy cell leukemia.

Authors:
Ella R Thompson Kenneth J C Lim James A Kuzich Michelle McBean David Westerman Constantine S Tam Piers Blombery

Leuk Lymphoma 2020 08 22;61(8):2024-2026. Epub 2020 Apr 22.

Department of Pathology, Peter MacCallum Cancer Centre, Melbourne, Australia.

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August 2020

Utility of clinical comprehensive genomic characterization for diagnostic categorization in patients presenting with hypocellular bone marrow failure syndromes.

Authors:
Piers Blombery Lucy Fox Georgina L Ryland Ella R Thompson Jennifer Lickiss Michelle McBean Satwica Yerneni David Hughes Anthea Greenway Francoise Mechinaud Erica M Wood Graham J Lieschke Jeff Szer Pasquale Barbaro John Roy Joel Wight Elly Lynch Melissa Martyn Clara Gaff David Ritchie

Haematologica 2021 01 1;106(1):64-73. Epub 2021 Jan 1.

Clinical Haematology, Peter MacCallum Cancer Centre/Royal Melbourne Hospital, Melbourne, Australia.

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January 2021

Multiple BCL2 mutations cooccurring with Gly101Val emerge in chronic lymphocytic leukemia progression on venetoclax.

Authors:
Piers Blombery Ella R Thompson Tamia Nguyen Richard W Birkinshaw Jia-Nan Gong Xiangting Chen Michelle McBean Rachel Thijssen Thomas Conway Mary Ann Anderson John F Seymour David A Westerman Peter E Czabotar David C S Huang Andrew W Roberts

Blood 2020 03;135(10):773-777

Clinical Haematology, The Royal Melbourne Hospital and Peter MacCallum Cancer Centre, Parkville, VIC, Australia.

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March 2020

Severe chemotherapy toxicity in a 10-year-old with T-acute lymphoblastic lymphoma harboring biallelic variants.

Authors:
Georgina L Ryland Lucy C Fox Virginia Wootton Ella R Thompson Jennifer Lickiss Alison H Trainer Paddy Barbaro Morag Whyte David Ritchie Piers Blombery

Leuk Lymphoma 2020 05 16;61(5):1257-1259. Epub 2020 Jan 16.

Department of Pathology, Peter MacCallum Cancer Centre, Melbourne, Australia.

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May 2020

Developing home-based telemental health services for youth: Practices from the SUAY Study.

Authors:
Erin Schoenfelder Gonzalez Kathleen Myers Ella E Thompson Deborah A King Ashley M Glass Robert B Penfold

J Telemed Telecare 2019 Jul 25:1357633X19863208. Epub 2019 Jul 25.

Kaiser Permanente Washington Health Research Institute; Seattle, WA USA.

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July 2019

Characterization of a novel venetoclax resistance mutation (BCL2 Phe104Ile) observed in follicular lymphoma.

Authors:
Piers Blombery Richard W Birkinshaw Tamia Nguyen Jia-Nan Gong Ella R Thompson Zhen Xu David A Westerman Peter E Czabotar Michael Dickinson David C S Huang John F Seymour Andrew W Roberts

Br J Haematol 2019 09 24;186(6):e188-e191. Epub 2019 Jun 24.

Clinical Haematology, Peter MacCallum Cancer Centre and Royal Melbourne Hospital, Melbourne, Australia.

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September 2019

First-in-Human RNA Polymerase I Transcription Inhibitor CX-5461 in Patients with Advanced Hematologic Cancers: Results of a Phase I Dose-Escalation Study.

Authors:
Amit Khot Natalie Brajanovski Donald P Cameron Nadine Hein Kylee H Maclachlan Elaine Sanij John Lim John Soong Emma Link Piers Blombery Ella R Thompson Andrew Fellowes Karen E Sheppard Grant A McArthur Richard B Pearson Ross D Hannan Gretchen Poortinga Simon J Harrison

Cancer Discov 2019 08 15;9(8):1036-1049. Epub 2019 May 15.

Clinical Haematology, Peter MacCallum Cancer Centre and Royal Melbourne Hospital, Melbourne, Victoria, Australia.

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August 2019

CNspector: a web-based tool for visualisation and clinical diagnosis of copy number variation from next generation sequencing.

Authors:
John F Markham Satwica Yerneni Georgina L Ryland Huei San Leong Andrew Fellowes Ella R Thompson Wasanthi De Silva Amit Kumar Richard Lupat Jason Li Jason Ellul Stephen Fox Michael Dickinson Anthony T Papenfuss Piers Blombery

Sci Rep 2019 04 23;9(1):6426. Epub 2019 Apr 23.

Department of Pathology, Peter MacCallum Cancer Centre, Parkville, VIC, Australia.

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April 2019

Molecular Drivers of Breast Implant-Associated Anaplastic Large Cell Lymphoma.

Authors:
Piers Blombery Ella R Thompson H Miles Prince

Plast Reconstr Surg 2019 03;143(3S A Review of Breast Implant-Associated Anaplastic Large Cell Lymphoma):59S-64S

From the Department of Pathology, Peter MacCalllum Cancer Centre, and the Sir Peter MacCallum Department of Oncology, University of Melbourne; and Molecular Oncology and Cancer Immunology, Epworth Healthcare.

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March 2019

Frequent activating STAT3 mutations and novel recurrent genomic abnormalities detected in breast implant-associated anaplastic large cell lymphoma.

Authors:
Piers Blombery Ella Thompson Georgina L Ryland Rachel Joyce David J Byrne Christine Khoo Stephen Lade Mark Hertzberg Greg Hapgood Paula Marlton Anand Deva Geoffrey Lindeman Stephen Fox David Westerman Miles Prince

Oncotarget 2018 Nov 16;9(90):36126-36136. Epub 2018 Nov 16.

Department of Pathology, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.

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November 2018

Acquisition of the Recurrent Gly101Val Mutation in BCL2 Confers Resistance to Venetoclax in Patients with Progressive Chronic Lymphocytic Leukemia.

Authors:
Piers Blombery Mary Ann Anderson Jia-Nan Gong Rachel Thijssen Richard W Birkinshaw Ella R Thompson Charis E Teh Tamia Nguyen Zhen Xu Christoffer Flensburg Thomas E Lew Ian J Majewski Daniel H D Gray David A Westerman Constantine S Tam John F Seymour Peter E Czabotar David C S Huang Andrew W Roberts

Cancer Discov 2019 03 4;9(3):342-353. Epub 2018 Dec 4.

Clinical Haematology, Peter MacCallum Cancer Centre and Royal Melbourne Hospital, Melbourne, Victoria, Australia.

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March 2019

Mutations in RECQL are not associated with breast cancer risk in an Australian population.

Authors:
Na Li Simone M Rowley David L Goode Kaushalya C Amarasinghe Simone McInerny Lisa Devereux Michelle W Wong-Brown Richard Lupat Jue Er Amanda Lee Siobhan Hughes Ella R Thompson Magnus Zethoven Jason Li Alison H Trainer Kylie L Gorringe Rodney J Scott Paul A James Ian G Campbell

Nat Genet 2018 10;50(10):1346-1348

Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, Melbourne, Victoria, Australia.

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October 2018

Oral Health Promotion and Smoking Cessation Program Delivered via Tobacco Quitlines: The Oral Health 4 Life Trial.

Authors:
Jennifer B McClure Terry Bush Melissa L Anderson Paula Blasi Ella Thompson Jennifer Nelson Sheryl L Catz

Am J Public Health 2018 05 22;108(5):689-695. Epub 2018 Mar 22.

Jennifer B. McClure, Melissa L. Anderson, Paula Blasi, Ella Thompson, and Jennifer Nelson are with the Kaiser Permanente Washington Health Research Institute, Seattle, WA. Terry Bush is with the Optum Center for Wellbeing Research, Seattle. Sheryl L. Catz is with the Betty Irene Moore School of Nursing, University of California, Davis.

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May 2018

Sensitive NPM1 Mutation Quantitation in Acute Myeloid Leukemia Using Ultradeep Next-Generation Sequencing in the Diagnostic Laboratory.

Authors:
Piers Blombery Kate Jones Ken Doig Georgina Ryland Michelle McBean Ella Thompson Costas K Yannakou David Westerman

Arch Pathol Lab Med 2018 May 9;142(5):606-612. Epub 2018 Feb 9.

From the Department of Pathology, Peter MacCallum Cancer Centre, Melbourne, Australia (Drs Blombery, Jones, Ryland, Thompson, Yannakou, and Westerman; Mr Doig; and Ms McBean); and the Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, Australia (Drs Blombery, Thompson, Yannakou, and Westerman). Drs Blombery and Jones contributed equally to this work.

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May 2018

Evaluating the breast cancer predisposition role of rare variants in genes associated with low-penetrance breast cancer risk SNPs.

Authors:
Na Li Simone M Rowley Ella R Thompson Simone McInerny Lisa Devereux Kaushalya C Amarasinghe Magnus Zethoven Richard Lupat David Goode Jason Li Alison H Trainer Kylie L Gorringe Paul A James Ian G Campbell

Breast Cancer Res 2018 01 9;20(1). Epub 2018 Jan 9.

Cancer Genetics Laboratory, Research Division, Peter MacCallum Cancer Centre, 305 Grattan Street, Melbourne, VIC, 3000, Australia.

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January 2018

Canary: an atomic pipeline for clinical amplicon assays.

Authors:
Kenneth D Doig Jason Ellul Andrew Fellowes Ella R Thompson Georgina Ryland Piers Blombery Anthony T Papenfuss Stephen B Fox

BMC Bioinformatics 2017 Dec 15;18(1):555. Epub 2017 Dec 15.

Department of Pathology, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia.

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December 2017

ASXL1 c.1934dup;p.Gly646Trpfs*12-a true somatic alteration requiring a new approach.

Authors:
Costas K Yannakou Kate Jones Michelle McBean Ella R Thompson Georgina L Ryland Ken Doig John Markham David Westerman Piers Blombery

Blood Cancer J 2017 12 15;7(12):656. Epub 2017 Dec 15.

Peter MacCallum Cancer Centre, Melbourne, VIC, 3000, Australia.

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December 2017

Detection of clinically relevant early genomic lesions in B-cell malignancies from circulating tumour DNA using a single hybridisation-based next generation sequencing assay.

Authors:
Piers A Blombery Georgina L Ryland John Markham Jerick Guinto Meaghan Wall Michelle McBean Kate Jones Ella R Thompson Daniel L Cameron Anthony T Papenfuss Miles H Prince Michael Dickinson David Alan Westerman

Br J Haematol 2018 10 7;183(1):146-149. Epub 2017 Sep 7.

Peter MacCallum Cancer Centre, Melbourne, Vic., Australia.

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October 2018

Incidental detection of germline variants of potential clinical significance by massively parallel sequencing in haematological malignancies.

Authors:
Costas K Yannakou Kate Jones Georgina L Ryland Ella R Thompson Gareth Reid Michelle McBean Alison Trainer David Westerman Piers Blombery

J Clin Pathol 2018 Jan 11;71(1):84-87. Epub 2017 Aug 11.

Peter MacCallum Cancer Centre, Melbourne, Australia.

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January 2018

PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories.

Authors:
Kenneth D Doig Andrew Fellowes Anthony H Bell Andrei Seleznev David Ma Jason Ellul Jason Li Maria A Doyle Ella R Thompson Amit Kumar Luis Lara Ravikiran Vedururu Gareth Reid Thomas Conway Anthony T Papenfuss Stephen B Fox

Genome Med 2017 04 24;9(1):38. Epub 2017 Apr 24.

Department of Pathology, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia.

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April 2017

Compromized DNA repair as a basis for identification of cancer radiotherapy patients with extreme radiosensitivity.

Authors:
Pavel Lobachevsky Trevor Leong Patricia Daly Jai Smith Nickala Best Jonathan Tomaszewski Ella R Thompson Na Li Ian G Campbell Roger F Martin Olga A Martin

Cancer Lett 2016 12 28;383(2):212-219. Epub 2016 Sep 28.

Molecular Radiation Biology Laboratory, Peter MacCallum Cancer Centre, 305 Grattan Street, Melbourne, 3000, Australia; The Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, VIC, 3010, Australia; Division of Radiation Oncology and Cancer Imaging, Peter MacCallum Cancer Centre, 305 Grattan Street, Melbourne, 3000, Australia. Electronic address:

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December 2016

Trials without tribulations: Minimizing the burden of pragmatic research on healthcare systems.

Authors:
Eric B Larson Chris Tachibana Ella Thompson Gloria D Coronado Lynn DeBar Laura M Dember Stacey Honda Susan S Huang Jeffrey G Jarvik Christine Nelson Edward Septimus Greg Simon Karin E Johnson

Healthc (Amst) 2016 Sep 29;4(3):138-41. Epub 2015 Jul 29.

Group Health Research Institute, Seattle, WA, USA. Electronic address:

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September 2016

Reevaluation of RINT1 as a breast cancer predisposition gene.

Authors:
Na Li Ella R Thompson Simone M Rowley Simone McInerny Lisa Devereux David Goode Michelle W Wong-Brown Rodney J Scott Alison H Trainer Kylie L Gorringe Paul A James Ian G Campbell

Breast Cancer Res Treat 2016 09 20;159(2):385-92. Epub 2016 Aug 20.

Cancer Genetics Laboratory, Research Division, Peter MacCallum Cancer Centre, 305 Grattan Street, Melbourne, VIC, 3000, Australia.

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September 2016

Whole exome sequencing reveals activating JAK1 and STAT3 mutations in breast implant-associated anaplastic large cell lymphoma anaplastic large cell lymphoma.

Authors:
Piers Blombery Ella R Thompson Kate Jones Gisela Mir Arnau Stephen Lade John F Markham Jason Li Anand Deva Ricky W Johnstone Amit Khot H Miles Prince David Westerman

Haematologica 2016 09 19;101(9):e387-90. Epub 2016 May 19.

Peter MacCallum Cancer Centre, Melbourne, Australia University of Melbourne, Australia.

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September 2016

No evidence that protein truncating variants in BRIP1 are associated with breast cancer risk: implications for gene panel testing.

Authors:
Douglas F Easton Fabienne Lesueur Brennan Decker Kyriaki Michailidou Jun Li Jamie Allen Craig Luccarini Karen A Pooley Mitul Shah Manjeet K Bolla Qin Wang Joe Dennis Jamil Ahmad Ella R Thompson Francesca Damiola Maroulio Pertesi Catherine Voegele Noura Mebirouk Nivonirina Robinot Geoffroy Durand Nathalie Forey Robert N Luben Shahana Ahmed Kristiina Aittomäki Hoda Anton-Culver Volker Arndt Caroline Baynes Matthias W Beckman Javier Benitez David Van Den Berg William J Blot Natalia V Bogdanova Stig E Bojesen Hermann Brenner Jenny Chang-Claude Kee Seng Chia Ji-Yeob Choi Don M Conroy Angela Cox Simon S Cross Kamila Czene Hatef Darabi Peter Devilee Mikael Eriksson Peter A Fasching Jonine Figueroa Henrik Flyger Florentia Fostira Montserrat García-Closas Graham G Giles Gord Glendon Anna González-Neira Pascal Guénel Christopher A Haiman Per Hall Steven N Hart Mikael Hartman Maartje J Hooning Chia-Ni Hsiung Hidemi Ito Anna Jakubowska Paul A James Esther M John Nichola Johnson Michael Jones Maria Kabisch Daehee Kang Veli-Matti Kosma Vessela Kristensen Diether Lambrechts Na Li Annika Lindblom Jirong Long Artitaya Lophatananon Jan Lubinski Arto Mannermaa Siranoush Manoukian Sara Margolin Keitaro Matsuo Alfons Meindl Gillian Mitchell Kenneth Muir Ines Nevelsteen Ans van den Ouweland Paolo Peterlongo Sze Yee Phuah Katri Pylkäs Simone M Rowley Suleeporn Sangrajrang Rita K Schmutzler Chen-Yang Shen Xiao-Ou Shu Melissa C Southey Harald Surowy Anthony Swerdlow Soo H Teo Rob A E M Tollenaar Ian Tomlinson Diana Torres Thérèse Truong Celine Vachon Senno Verhoef Michelle Wong-Brown Wei Zheng Ying Zheng Heli Nevanlinna Rodney J Scott Irene L Andrulis Anna H Wu John L Hopper Fergus J Couch Robert Winqvist Barbara Burwinkel Elinor J Sawyer Marjanka K Schmidt Anja Rudolph Thilo Dörk Hiltrud Brauch Ute Hamann Susan L Neuhausen Roger L Milne Olivia Fletcher Paul D P Pharoah Ian G Campbell Alison M Dunning Florence Le Calvez-Kelm David E Goldgar Sean V Tavtigian Georgia Chenevix-Trench

J Med Genet 2016 05 26;53(5):298-309. Epub 2016 Feb 26.

Department of Genetics, QIMR Berghofer Medical Research Institute, Brisbane, Australia.

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May 2016

Panel Testing for Familial Breast Cancer: Calibrating the Tension Between Research and Clinical Care.

Authors:
Ella R Thompson Simone M Rowley Na Li Simone McInerny Lisa Devereux Michelle W Wong-Brown Alison H Trainer Gillian Mitchell Rodney J Scott Paul A James Ian G Campbell

J Clin Oncol 2016 May 19;34(13):1455-9. Epub 2016 Jan 19.

Ella R. Thompson, Simone M. Rowley, Na Li, Simone McInerny, Lisa Devereux, Alison H. Trainer, Gillian Mitchell, Paul A. James, and Ian G. Campbell, Peter MacCallum Cancer Centre, East Melbourne; Ella R. Thompson, Alison H. Trainer, Gillian Mitchell, Paul A. James, and Ian G. Campbell, University of Melbourne, Melbourne, Victoria; Michelle W. Wong-Brown and Rodney J. Scott, The University of Newcastle and Hunter Medical Research Institute; Rodney J. Scott, Hunter Area Pathology Service, Newcastle, New South Wales, Australia; Na Li, Huazhong University of Science and Technology, Wuhan, Hubei, China; and Gillian Mitchell, BC Cancer Agency, Vancouver, Canada.

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May 2016

Reevaluation of the BRCA2 truncating allele c.9976A > T (p.Lys3326Ter) in a familial breast cancer context.

Authors:
Ella R Thompson Kylie L Gorringe Simone M Rowley Na Li Simone McInerny Michelle W Wong-Brown Lisa Devereux Jason Li Alison H Trainer Gillian Mitchell Rodney J Scott Paul A James Ian G Campbell

Sci Rep 2015 Oct 12;5:14800. Epub 2015 Oct 12.

Cancer Genetics Laboratory, Research Division, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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October 2015

Copy number analysis of ductal carcinoma in situ with and without recurrence.

Authors:
Kylie L Gorringe Sally M Hunter Jia-Min Pang Ken Opeskin Prue Hill Simone M Rowley David Y H Choong Ella R Thompson Alexander Dobrovic Stephen B Fox G Bruce Mann Ian G Campbell

Mod Pathol 2015 Sep 19;28(9):1174-84. Epub 2015 Jun 19.

Cancer Genetics Laboratory, Peter MacCullum Cancer Centre, East Melbourne, VIC, Australia.

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September 2015

Prevalence of PALB2 mutations in Australian familial breast cancer cases and controls.

Authors:
Ella R Thompson Kylie L Gorringe Simone M Rowley Michelle W Wong-Brown Simone McInerny Na Li Alison H Trainer Lisa Devereux Maria A Doyle Jason Li Richard Lupat Martin B Delatycki Gillian Mitchell Paul A James Rodney J Scott Ian G Campbell

Breast Cancer Res 2015 Aug 19;17:111. Epub 2015 Aug 19.

Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, Locked Bag 1, A'Beckett St, East Melbourne, VIC, 8006, Australia.

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August 2015

FANCM c.5791C>T nonsense mutation (rs144567652) induces exon skipping, affects DNA repair activity and is a familial breast cancer risk factor.

Authors:
Paolo Peterlongo Irene Catucci Mara Colombo Laura Caleca Eliseos Mucaki Massimo Bogliolo Maria Marin Francesca Damiola Loris Bernard Valeria Pensotti Sara Volorio Valentina Dall'Olio Alfons Meindl Claus Bartram Christian Sutter Harald Surowy Valérie Sornin Marie-Gabrielle Dondon Séverine Eon-Marchais Dominique Stoppa-Lyonnet Nadine Andrieu Olga M Sinilnikova Gillian Mitchell Paul A James Ella Thompson Marina Marchetti Cristina Verzeroli Carmen Tartari Gabriele Lorenzo Capone Anna Laura Putignano Maurizio Genuardi Veronica Medici Isabella Marchi Massimo Federico Silvia Tognazzo Laura Matricardi Simona Agata Riccardo Dolcetti Lara Della Puppa Giulia Cini Viviana Gismondi Valeria Viassolo Chiara Perfumo Maria Antonietta Mencarelli Margherita Baldassarri Bernard Peissel Gaia Roversi Valentina Silvestri Piera Rizzolo Francesca Spina Caterina Vivanet Maria Grazia Tibiletti Maria Adelaide Caligo Gaetana Gambino Stefania Tommasi Brunella Pilato Carlo Tondini Chiara Corna Bernardo Bonanni Monica Barile Ana Osorio Javier Benitez Luisa Balestrino Laura Ottini Siranoush Manoukian Marco A Pierotti Alessandra Renieri Liliana Varesco Fergus J Couch Xianshu Wang Peter Devilee Florentine S Hilbers Christi J van Asperen Alessandra Viel Marco Montagna Laura Cortesi Orland Diez Judith Balmaña Jan Hauke Rita K Schmutzler Laura Papi Miguel Angel Pujana Conxi Lázaro Anna Falanga Kenneth Offit Joseph Vijai Ian Campbell Barbara Burwinkel Anders Kvist Hans Ehrencrona Sylvie Mazoyer Sara Pizzamiglio Paolo Verderio Jordi Surralles Peter K Rogan Paolo Radice

Hum Mol Genet 2015 Sep 30;24(18):5345-55. Epub 2015 Jun 30.

IFOM, the FIRC Institute of Molecular Oncology, Milan, Italy, Unit of Molecular Bases of Genetic Risk and Genetic Testing, Department of Preventive and Predictive Medicine.

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September 2015

A guide to research partnerships for pragmatic clinical trials.

Authors:
Karin E Johnson Chris Tachibana Gloria D Coronado Laura M Dember Russell E Glasgow Susan S Huang Paul J Martin Julie Richards Gary Rosenthal Ed Septimus Gregory E Simon Leif Solberg Jerry Suls Ella Thompson Eric B Larson

BMJ 2014 Dec 1;349:g6826. Epub 2014 Dec 1.

Group Health Research Institute, Seattle, WA 98101, USA.

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December 2014

Embedded research to improve health: the 20th annual HMO Research Network conference, March 31-April 3, 2014, Phoenix, Arizona.

Authors:
Ella E Thompson John F Steiner

Clin Med Res 2014 Sep;12(1-2):73-6

Institute for Health Research, Kaiser Permanente Colorado, Denver, CO, USA

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September 2014

Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human and mouse genomes: a virtual appliance approach for instant deployment.

Authors:
Jason Li Maria A Doyle Isaam Saeed Stephen Q Wong Victoria Mar David L Goode Franco Caramia Ken Doig Georgina L Ryland Ella R Thompson Sally M Hunter Saman K Halgamuge Jason Ellul Alexander Dobrovic Ian G Campbell Anthony T Papenfuss Grant A McArthur Richard W Tothill

PLoS One 2014 21;9(4):e95217. Epub 2014 Apr 21.

Translational Research Laboratory, Cancer Therapeutics Program, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia; Department of Pathology, University of Melbourne, Parkville, VIC, Australia.

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January 2015

Sustaining Research Networks: the Twenty-Year Experience of the HMO Research Network.

Authors:
John F Steiner Andrea R Paolino Ella E Thompson Eric B Larson

EGEMS (Wash DC) 2014 9;2(2):1067. Epub 2014 Jun 9.

Group Health Research Institute.

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April 2015

COMPLEXO: identifying the missing heritability of breast cancer via next generation collaboration.

Authors:
Melissa C Southey Daniel J Park Tu Nguyen-Dumont Ian Campbell Ella Thompson Alison H Trainer Georgia Chenevix-Trench Jacques Simard Martine Dumont Penny Soucy Mads Thomassen Lars Jønson Inge S Pedersen Thomas Vo Hansen Heli Nevanlinna Sofia Khan Olga Sinilnikova Sylvie Mazoyer Fabienne Lesueur Francesca Damiola Rita Schmutzler Alfons Meindl Eric Hahnen Michael R Dufault Tl Chris Chan Ava Kwong Rosa Barkardóttir Paolo Radice Paolo Peterlongo Peter Devilee Florentine Hilbers Javier Benitez Anders Kvist Therese Törngren Douglas Easton David Hunter Sara Lindstrom Peter Kraft Wei Zheng Yu-Tang Gao Jirong Long Susan Ramus Bing-Jian Feng Jeffrey N Weitzel Katherine Nathanson Kenneth Offit Vijai Joseph Mark Robson Kasmintan Schrader San Wang Yeong C Kim Henry Lynch Carrie Snyder Sean Tavtigian Susan Neuhausen Fergus J Couch David E Goldgar

Breast Cancer Res 2013 Jun 21;15(3):402. Epub 2013 Jun 21.

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June 2013

Analysis of RAD51D in ovarian cancer patients and families with a history of ovarian or breast cancer.

Authors:
Ella R Thompson Simone M Rowley Sarah Sawyer kConfab Diana M Eccles Alison H Trainer Gillian Mitchell Paul A James Ian G Campbell

PLoS One 2013 25;8(1):e54772. Epub 2013 Jan 25.

VBCRC Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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July 2013

Rare variants in XRCC2 as breast cancer susceptibility alleles.

Authors:
Florentine S Hilbers Juul T Wijnen Nicoline Hoogerbrugge Jan C Oosterwijk Margriet J Collee Paolo Peterlongo Paolo Radice Siranoush Manoukian Irene Feroce Fabio Capra Fergus J Couch Xianshu Wang Lucia Guidugli Kenneth Offit Sohela Shah Ian G Campbell Ella R Thompson Paul A James Alison H Trainer Javier Gracia Javier Benitez Christi J van Asperen Peter Devilee

J Med Genet 2012 Oct;49(10):618-20

Department of Human Genetics, Leiden University Medical Centre, Leiden, The Netherlands.

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October 2012

Exome sequencing identifies rare deleterious mutations in DNA repair genes FANCC and BLM as potential breast cancer susceptibility alleles.

Authors:
Ella R Thompson Maria A Doyle Georgina L Ryland Simone M Rowley David Y H Choong Richard W Tothill Heather Thorne Daniel R Barnes Jason Li Jason Ellul Gayle K Philip Yoland C Antill Paul A James Alison H Trainer Gillian Mitchell Ian G Campbell

PLoS Genet 2012 Sep 27;8(9):e1002894. Epub 2012 Sep 27.

Victorian Breast Cancer Research Consortium Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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September 2012

Analysis of KLLN as a high-penetrance breast cancer predisposition gene.

Authors:
Ella R Thompson Kylie L Gorringe David Y H Choong Diana M Eccles Gillian Mitchell Ian G Campbell

Breast Cancer Res Treat 2012 Jul 13;134(2):543-7. Epub 2012 May 13.

VBCRC Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, Locked Bag 1, A'Beckett St, East Melbourne, VIC 8006, Australia.

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July 2012

CONTRA: copy number analysis for targeted resequencing.

Authors:
Jason Li Richard Lupat Kaushalya C Amarasinghe Ella R Thompson Maria A Doyle Georgina L Ryland Richard W Tothill Saman K Halgamuge Ian G Campbell Kylie L Gorringe

Bioinformatics 2012 May 2;28(10):1307-13. Epub 2012 Apr 2.

Bioinformatics Core Facility, Peter MacCallum Cancer Centre, VIC 3002, Australia.

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May 2012

BRCA and beyond: a genome-first approach to familial breast cancer risk assessment.

Authors:
Alison H Trainer Ella Thompson Paul A James

Discov Med 2011 Nov;12(66):433-43

Familial Cancer Service, Peter MacCallum Cancer Institute, East Melbourne, Australia.

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November 2011

Identification of copy number alterations associated with the progression of DCIS to invasive ductal carcinoma.

Authors:
Clint E Johnson Kylie L Gorringe Ella R Thompson Ken Opeskin Samantha E Boyle Yuker Wang Prue Hill G Bruce Mann Ian G Campbell

Breast Cancer Res Treat 2012 Jun 4;133(3):889-98. Epub 2011 Nov 4.

VBCRC Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, Locked Bag 1, A'Beckett St, East Melbourne, Victoria, VIC 8006, Australia.

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June 2012

Analysis of RAD51C germline mutations in high-risk breast and ovarian cancer families and ovarian cancer patients.

Authors:
Ella R Thompson Samantha E Boyle Julie Johnson Georgina L Ryland Sarah Sawyer David Y H Choong kConFab Georgia Chenevix-Trench Alison H Trainer Geoffrey J Lindeman Gillian Mitchell Paul A James Ian G Campbell

Hum Mutat 2012 Jan 4;33(1):95-9. Epub 2011 Nov 4.

VBCRC Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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January 2012

Streamlining research by using existing tools.

Authors:
Sarah M Greene Laura-Mae Baldwin Rowena J Dolor Ella Thompson Anne Victoria Neale

Clin Transl Sci 2011 Aug;4(4):266-7

Group Health Cooperative, Group Health Research Institute, Seattle, Washington, USA.

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August 2011

Partnership-driven Resources to Improve and Enhance Research (PRIMER): a survey of community-engaged researchers and creation of an online toolkit.

Authors:
Rowena J Dolor Sarah M Greene Ella Thompson Laura-Mae Baldwin Anne Victoria Neale

Clin Transl Sci 2011 Aug;4(4):259-65

Duke Clinical Research Institute and Duke University Medical Center, Durham, North Carolina, USA.

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August 2011

SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer.

Authors:
Marjan E Askarian-Amiri Joanna Crawford Juliet D French Chanel E Smart Martin A Smith Michael B Clark Kelin Ru Tim R Mercer Ella R Thompson Sunil R Lakhani Ana C Vargas Ian G Campbell Melissa A Brown Marcel E Dinger John S Mattick

RNA 2011 May 1;17(5):878-91. Epub 2011 Apr 1.

Institute for Molecular Bioscience, University of Queensland, St. Lucia, QLD, Australia.

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May 2011

Frequent somatic mutations of GATA3 in non-BRCA1/BRCA2 familial breast tumors, but not in BRCA1-, BRCA2- or sporadic breast tumors.

Authors:
Jeremy M Arnold David Y H Choong Ella R Thompson Nic Waddell Geoffrey J Lindeman Jane E Visvader Ian G Campbell Georgia Chenevix-Trench

Breast Cancer Res Treat 2010 Jan 3;119(2):491-6. Epub 2009 Feb 3.

Queensland Institute of Medical Research, Royal Brisbane Hospital, Herston, QLD, Australia 4029.

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January 2010

No evidence of clonal somatic genetic alterations in cancer-associated fibroblasts from human breast and ovarian carcinomas.

Authors:
Wen Qiu Min Hu Anita Sridhar Ken Opeskin Stephen Fox Michail Shipitsin Melanie Trivett Ella R Thompson Manasa Ramakrishna Kylie L Gorringe Kornelia Polyak Izhak Haviv Ian G Campbell

Nat Genet 2008 May 13;40(5):650-5. Epub 2008 Apr 13.

VBCRC Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria 3002, Australia.

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May 2008

High-resolution single nucleotide polymorphism array analysis of epithelial ovarian cancer reveals numerous microdeletions and amplifications.

Authors:
Kylie L Gorringe Sharoni Jacobs Ella R Thompson Anita Sridhar Wen Qiu David Y H Choong Ian G Campbell

Clin Cancer Res 2007 Aug;13(16):4731-9

Victorian Breast Cancer Research Consortium Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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August 2007

Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays.

Authors:
Sharoni Jacobs Ella R Thompson Yasuhito Nannya Go Yamamoto Raji Pillai Seishi Ogawa Dione K Bailey Ian G Campbell

Cancer Res 2007 Mar;67(6):2544-51

Affymetrix, Inc., Santa Clara, California 95051, USA.

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March 2007

Changes in health care costs before and after smoking cessation.

Authors:
Paul A Fishman Ella E Thompson Elizabeth Merikle Susan J Curry

Nicotine Tob Res 2006 Jun;8(3):393-401

Center for Health Studies, Group Health Cooperative, Seattle, WA 98101, USA.

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June 2006

Whole genome SNP arrays using DNA derived from formalin-fixed, paraffin-embedded ovarian tumor tissue.

Authors:
Ella R Thompson Shane C Herbert Susan M Forrest Ian G Campbell

Hum Mutat 2005 Oct;26(4):384-9

VBCRC Cancer Genetics Laboratory, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.

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October 2005

A novel duplication polymorphism in the FANCA promoter and its association with breast and ovarian cancer.

Authors:
Ella Thompson Rebecca L Dragovic Sally-Anne Stephenson Diana M Eccles Ian G Campbell Alexander Dobrovic

BMC Cancer 2005 Apr 29;5:43. Epub 2005 Apr 29.

Department of Pathology, Peter MacCallum Cancer Centre, Locked Bag 1 A'Beckett St, Melbourne, Victoria 8006, Australia.

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April 2005

Health care costs among smokers, former smokers, and never smokers in an HMO.

Authors:
Paul A Fishman Zeba M Khan Ella E Thompson Susan J Curry

Health Serv Res 2003 Apr;38(2):733-49

Center for Health Studies, Group Health Cooperative of Puget Sound, Seattle, WA 98101, USA.

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April 2003

Bupropion SR and smoking cessation in actual practice: methods for recruitment, screening, and exclusion for a field trial in a managed-care setting.

Authors:
Lisa M Jack Gary E Swan Ella Thompson Susan J Curry Timothy McAfee Sara Dacey Katherine Bergman

Prev Med 2003 May;36(5):585-93

Center for Health Sciences, SRI International, Menlo Park, CA 94025, USA.

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May 2003