Publications by authors named "Elizabeth S Chen"

76Publications

Applying FAIR Principles to Improve Data Searchability of Emergency Department Datasets: A Case Study for HCUP-SEDD.

Methods Inf Med 2020 02 14;59(1):48-56. Epub 2020 Jun 14.

Center for Biomedical Informatics, Brown University, Providence, Rhode Island, United States.

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http://dx.doi.org/10.1055/s-0040-1712510DOI Listing
February 2020

Machine Learning Offers Exciting Potential for Predicting Postprocedural Outcomes: A Framework for Developing Random Forest Models in IR.

J Vasc Interv Radiol 2020 06 4;31(6):1018-1024.e4. Epub 2020 May 4.

Division of Interventional Radiology, Department of Diagnostic Imaging, Providence, Rhode Island.

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http://dx.doi.org/10.1016/j.jvir.2019.11.030DOI Listing
June 2020

Machine Learning Offers Exciting Potential for Predicting Postprocedural Outcomes: A Framework for Developing Random Forest Models in IR.

J Vasc Interv Radiol 2020 06 4;31(6):1018-1024.e4. Epub 2020 May 4.

Division of Interventional Radiology, Department of Diagnostic Imaging, Providence, Rhode Island.

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http://dx.doi.org/10.1016/j.jvir.2019.11.030DOI Listing
June 2020

Characterization of Cerebellum-Specific Ribosomal DNA Epigenetic Modifications in Alzheimer's Disease: Should the Cerebellum Serve as a Control Tissue After All?

Mol Neurobiol 2020 Jun 30;57(6):2563-2571. Epub 2020 Mar 30.

Departamento de Morfologia e Genética, Programa de Pós-Graduação em Biologia Estrutural e Funcional da UNIFESP/EPM, Disciplina de Genética, Universidade Federal de São Paulo (UNIFESP/EPM), São Paulo, SP, Brazil.

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http://dx.doi.org/10.1007/s12035-020-01902-9DOI Listing
June 2020

Web-Based Visualization of MeSH-Based PubMed/MEDLINE Statistics.

Stud Health Technol Inform 2019 Aug;264:1490-1491

Center for Biomedical Informatics, Brown University, Providence, RI, USA.

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http://dx.doi.org/10.3233/SHTI190499DOI Listing
August 2019

Quality Informatics: The Convergence of Healthcare Data, Analytics, and Clinical Excellence.

Appl Clin Inform 2019 03 24;10(2):272-277. Epub 2019 Apr 24.

Warren Alpert Medical School and Center for Biomedical Informatics, Brown University, Rhode Island, United States.

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http://dx.doi.org/10.1055/s-0039-1685221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6482041PMC
March 2019

Using Demographic Factors and Comorbidities to Develop a Predictive Model for ICU Mortality in Patients with Acute Exacerbation COPD.

AMIA Annu Symp Proc 2018 5;2018:1319-1328. Epub 2018 Dec 5.

Alpert Medical School and Center for Biomedical Informatics, Brown University, Providence, RI.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371239PMC
January 2020

Trend Analysis of Aggregate Outcomes in Complex Health Survey Data.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:349-358. Epub 2018 May 18.

Alpert Medical School and Center for Biomedical Informatics, Brown University, Providence, RI.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961819PMC
May 2018

Evaluation of Flowsheet Documentation in the Electronic Health Record for Residence, Living Situation, and Living Conditions.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:236-245. Epub 2018 May 18.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961798PMC
May 2018

Residence, Living Situation, and Living Conditions Information Documentation in Clinical Practice.

AMIA Annu Symp Proc 2017 16;2017:1783-1792. Epub 2018 Apr 16.

Institute for Health Informatics, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5977617PMC
February 2019

Representation of Social History Factors Across Age Groups: A Topic Analysis of Free-Text Social Documentation.

AMIA Annu Symp Proc 2017 16;2017:1169-1178. Epub 2018 Apr 16.

Department of Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5977721PMC
April 2019

Identifying Psychiatric Comorbidities for Obstructive Sleep Apnea in the Biomedical Literature and Electronic Health Record.

AMIA Jt Summits Transl Sci Proc 2017 26;2017:502-511. Epub 2017 Jul 26.

Center for Biomedical Informatics, Brown University, Providence, RI.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543349PMC
July 2017

Representing Residence, Living Situation, and Living Conditions: An Evaluation of Terminologies, Standards, Guidelines, and Measures/Surveys.

AMIA Annu Symp Proc 2016 10;2016:2072-2081. Epub 2017 Feb 10.

Institute for Health Informatics; Dept of Surgery, Univ. of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333311PMC
July 2017

Content and Quality of Free-Text Occupation Documentation in the Electronic Health Record.

AMIA Annu Symp Proc 2016 10;2016:1708-1716. Epub 2017 Feb 10.

Institute for Health Informatics; Department of Surgery, University of Minnesota, Minneapolis, MN.

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http://pubmedcentralcanada.ca/pmcc/articles/PMC5333203/pdf/2
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333203PMC
August 2017

Investigating Longitudinal Tobacco Use Information from Social History and Clinical Notes in the Electronic Health Record.

AMIA Annu Symp Proc 2016 10;2016:1209-1218. Epub 2017 Feb 10.

Institute for Health Informatics; Department of Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333299PMC
August 2017

Associations of cerebrovascular metabolism genotypes with neuropsychiatric symptoms and age at onset of Alzheimer's disease dementia.

Braz J Psychiatry 2017 Apr-Jun;39(2):95-103. Epub 2017 Jan 12.

Departamento de Neurologia e Neurocirurgia, Escola Paulista de Medicina (EPM), Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brazil.

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http://dx.doi.org/10.1590/1516-4446-2016-1991DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111454PMC
September 2017

Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record.

AMIA Jt Summits Transl Sci Proc 2016 20;2016:250-9. Epub 2016 Jul 20.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN;; Medical School, University of Minnesota, Minneapolis, MN;

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001738PMC
August 2016

Predictors of Cognitive and Functional Decline in Patients With Alzheimer Disease Dementia From Brazil.

Alzheimer Dis Assoc Disord 2016 Jul-Sep;30(3):243-50

Departments of *Neurology and Neurosurgery †Morphology and Genetics, Escola Paulista de Medicina, Federal University of São Paulo (UNIFESP), São Paulo, SP, Brazil.

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http://dx.doi.org/10.1097/WAD.0000000000000117DOI Listing
November 2017

Towards the Standardized Documentation of E-Cigarette Use in the Electronic Health Record for Population Health Surveillance and Research.

AMIA Jt Summits Transl Sci Proc 2015 25;2015:199-203. Epub 2015 Mar 25.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN ; Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4525250PMC
August 2015

Contrasts Between Patients With Lewy Body Dementia Syndromes and APOE-ε3/ε3 Patients With Late-onset Alzheimer Disease Dementia.

Neurologist 2015 Aug;20(2):35-41

Departments of *Neurology and Neurosurgery †Morphology and Genetics, Escola Paulista de Medicina, Federal University of São Paulo (UNIFESP), São Paulo, SP, Brazil.

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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/NRL.0000000000000045DOI Listing
August 2015

Analyzing Operative Note Structure in Development of a Section Header Resource.

Stud Health Technol Inform 2015 ;216:821-6

Center for Clinical and Translational Science, University of Vermont, Burlington, VT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4781788PMC
April 2016

Investigation of genes important in neurodevelopment disorders in adult human brain.

Hum Genet 2015 Oct 21;134(10):1037-53. Epub 2015 Jul 21.

Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada.

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http://dx.doi.org/10.1007/s00439-015-1584-zDOI Listing
October 2015

Automated Extraction of Substance Use Information from Clinical Texts.

AMIA Annu Symp Proc 2015 5;2015:2121-30. Epub 2015 Nov 5.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN; Department of Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765598PMC
April 2018

Mining and Visualizing Family History Associations in the Electronic Health Record: A Case Study for Pediatric Asthma.

AMIA Annu Symp Proc 2015;2015:396-405. Epub 2015 Nov 5.

Center for Biomedical Informatics, Warren Alpert Medical School of Brown University, Providence, RI; Center for Clinical and Translational Science, University of Vermont, Burlington, VT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765567PMC
February 2017

Representation of Drug Use in Biomedical Standards, Clinical Text, and Research Measures.

AMIA Annu Symp Proc 2015;2015:376-85. Epub 2015 Nov 5.

Center for Clinical & Translational Science, University of Vermont, Burlington, VT; Department of Medicine, University of Vermont, Burlington, VT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765691PMC
February 2017

Assessing the adequacy of the HL7/LOINC Document Ontology Role axis.

J Am Med Inform Assoc 2015 May 28;22(3):615-20. Epub 2014 Oct 28.

Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA University of Minnesota Physicians, Minneapolis, Minnesota, USA Department of Surgery, University of Minnesota, Minneapolis, Minnesota, USA.

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http://dx.doi.org/10.1136/amiajnl-2014-003100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5901117PMC
May 2015

Multi-source development of an integrated model for family health history.

J Am Med Inform Assoc 2015 Apr 21;22(e1):e67-80. Epub 2014 Oct 21.

Institute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, USA Department of Surgery, University of Minnesota, Minneapolis, Minnesota, USA.

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http://dx.doi.org/10.1136/amiajnl-2014-003092DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5901119PMC
April 2015

Molecular convergence of neurodevelopmental disorders.

Am J Hum Genet 2014 Nov 9;95(5):490-508. Epub 2014 Oct 9.

Department of Psychiatry, McGill University, Montreal, QC H4H 1R3, Canada; McGill Group for Suicide Studies, Douglas Hospital Research Institute, Montreal, QC H4H 1R3, Canada; Department of Human Genetics, McGill University, Montreal, QC H4H 1R3, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4225591PMC
November 2014

Mining the electronic health record for disease knowledge.

Methods Mol Biol 2014 ;1159:269-86

Center for Clinical and Translational Science, University of Vermont, Burlington, VT, USA,

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http://dx.doi.org/10.1007/978-1-4939-0709-0_15DOI Listing
May 2015

Application of HL7/LOINC Document Ontology to a University-Affiliated Integrated Health System Research Clinical Data Repository.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:230-4. Epub 2014 Apr 7.

Institute for Health Informatics ; Department of Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419769PMC
May 2015

PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed.

AMIA Annu Symp Proc 2014 14;2014:1990-9. Epub 2014 Nov 14.

Department of Computer Science, Univ. of Vermont, Burlington, VT ; Department of Medicine, Univ. of Vermont, Burlington, VT ; Center for Clinical & Translational Science, Univ. of Vermont, Burlington, VT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419975PMC
September 2015

Automated extraction of family history information from clinical notes.

AMIA Annu Symp Proc 2014 14;2014:1709-17. Epub 2014 Nov 14.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN ; Department of Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419952PMC
September 2015

Using Arden Syntax to identify registry-eligible very low birth weight neonates from the Electronic Health Record.

AMIA Annu Symp Proc 2014 14;2014:1028-36. Epub 2014 Nov 14.

University of Vermont, Burlington, VT ; Vermont Oxford Network, Burlington, VT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419950PMC
September 2015

Extending the HL7/LOINC Document Ontology Settings of Care.

AMIA Annu Symp Proc 2014 14;2014:994-1001. Epub 2014 Nov 14.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN ; Department of Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419877PMC
September 2015

Examining the use, contents, and quality of free-text tobacco use documentation in the Electronic Health Record.

AMIA Annu Symp Proc 2014 14;2014:366-74. Epub 2014 Nov 14.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN ; Surgery, University of Minnesota, Minneapolis, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419995PMC
August 2015

Exploring generalized association rule mining for disease co-occurrences.

AMIA Annu Symp Proc 2012 3;2012:1284-93. Epub 2012 Nov 3.

Department of Computer Science, University of Vermont, Burlington, VT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540474PMC
July 2013

Determining compound comorbidities for heart failure from hospital discharge data.

AMIA Annu Symp Proc 2012 3;2012:809-18. Epub 2012 Nov 3.

Center for Clinical and Translational Science, University of Vermont, Burlington, VT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540553PMC
July 2013

Social and behavioral history information in public health datasets.

AMIA Annu Symp Proc 2012 3;2012:625-34. Epub 2012 Nov 3.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540479PMC
July 2013

Characterizing the use and contents of free-text family history comments in the Electronic Health Record.

AMIA Annu Symp Proc 2012 3;2012:85-92. Epub 2012 Nov 3.

Center for Clinical & Translational Science, Department of Medicine, University of Vermont, Burlington, VT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540518PMC
July 2013

Translating standards into practice: experiences and lessons learned in biomedicine and health care.

J Biomed Inform 2012 Aug 30;45(4):609-12. Epub 2012 Jun 30.

Center for Clinical and Translational Science, University of Vermont, 89 Beaumont Avenue, Given Courtyard N311, Burlington, VT 05405, USA.

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http://dx.doi.org/10.1016/j.jbi.2012.06.006DOI Listing
August 2012

Towards Structuring Unstructured GenBank Metadata for Enhancing Comparative Biological Studies.

AMIA Jt Summits Transl Sci Proc 2011 7;2011:6-10. Epub 2011 Mar 7.

Center for Clinical and Translational Science.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248757PMC
August 2012

Attribute Utility Motivated k-anonymization of datasets to support the heterogeneous needs of biomedical researchers.

AMIA Annu Symp Proc 2011 22;2011:1573-82. Epub 2011 Oct 22.

Department of Computer Science, University of Vermont, Burlington, VT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3243250PMC
February 2013

A multi-site content analysis of social history information in clinical notes.

AMIA Annu Symp Proc 2011 22;2011:227-36. Epub 2011 Oct 22.

Center for Clinical & Translational Science, University of Vermont, Burlington, VT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3243209PMC
February 2013

Standardizing Clinical Document Names Using the HL7/LOINC Document Ontology and LOINC Codes.

AMIA Annu Symp Proc 2010 Nov 13;2010:101-5. Epub 2010 Nov 13.

Center for Clinical & Translational Science.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041326PMC
November 2010

The epigenetic effects of antidepressant treatment on human prefrontal cortex BDNF expression.

Int J Neuropsychopharmacol 2011 Apr 7;14(3):427-9. Epub 2010 Dec 7.

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http://dx.doi.org/10.1017/S1461145710001422DOI Listing
April 2011

An automated technique for identifying associations between medications, laboratory results and problems.

J Biomed Inform 2010 Dec 25;43(6):891-901. Epub 2010 Sep 25.

Division of General Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02120, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S15320464100014
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http://dx.doi.org/10.1016/j.jbi.2010.09.009DOI Listing
December 2010

MeSHing molecular sequences and clinical trials: a feasibility study.

J Biomed Inform 2010 Jun 20;43(3):442-50. Epub 2009 Oct 20.

Center for Clinical and Translational Science, University of Vermont, Burlington, VT 05405, USA.

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http://dx.doi.org/10.1016/j.jbi.2009.10.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878930PMC
June 2010

Laying the groundwork for enterprise-wide medical language processing services: architecture and process.

AMIA Annu Symp Proc 2009 Nov 14;2009:97-101. Epub 2009 Nov 14.

Center for Clinical & Translational Science, University of Vermont, Burlington, VT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815370PMC
November 2009

Challenges in creating an enterprise clinical rules service.

AMIA Annu Symp Proc 2008 Nov 6:1086. Epub 2008 Nov 6.

Clinical Informatics Research & Development, Partners HealthCare System, Inc, Boston, MA, USA.

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November 2008

Early experiences in evolving an enterprise-wide information model for laboratory and clinical observations.

AMIA Annu Symp Proc 2008 Nov 6:106-10. Epub 2008 Nov 6.

Clinical Informatics Research & Development, Partners HealthCare System, Wellesley, MA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656065PMC
November 2008

Enhancing clinical problem lists through data mining and natural language processing.

AMIA Annu Symp Proc 2008 Nov 6:901. Epub 2008 Nov 6.

Clinical Informatics Research & Development, Partners HealthCare System, Wellesley, MA, USA.

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November 2008

Technology evaluation for a mobile fall-injury risk assessment instrument.

AMIA Annu Symp Proc 2007 Oct 11:922. Epub 2007 Oct 11.

School of Nursing, Columbia University, New York, NY, USA.

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October 2007

Monitoring the function and use of a clinical decision support system.

AMIA Annu Symp Proc 2007 Oct 11:902. Epub 2007 Oct 11.

Clinical Informatics Research & Development, Partners HealthCare System, Wellesley, MA, USA.

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October 2007

Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study.

J Am Med Inform Assoc 2008 Jan-Feb;15(1):87-98. Epub 2007 Oct 18.

Clinical Informatics Research & Development, Partners HealthCare System, 93 Worcester Street, PO Box 81902, Wellesley, MA 02481, USA.

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https://academic.oup.com/jamia/article-lookup/doi/10.1197/ja
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http://dx.doi.org/10.1197/jamia.M2401DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2274872PMC
February 2008

Automated real-time detection and notification of positive infection cases.

AMIA Annu Symp Proc 2006 :883

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839567PMC
September 2007

Disseminating natural language processed clinical narratives.

AMIA Annu Symp Proc 2006 :126-30

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839529PMC
September 2007

An automated approach to studying health resource and infobutton use.

Stud Health Technol Inform 2006 ;122:273-8

Department of Biomedical Informatics, Columbia University, New York, New York, USA.

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December 2006

APO A-V-1131T-->C polymorphism frequency and its association with morbidity in a Brazilian elderly population.

Clin Chem Lab Med 2006 ;44(1):32-6

Disciplina de Genética, Departamento de Morfologia, Universidade Federal de São Paulo, Escola Paulista de Medicina (UNIFESP/EPM), Brazil.

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http://dx.doi.org/10.1515/CCLM.2006.007DOI Listing
March 2006

Terminology model discovery using natural language processing and visualization techniques.

J Biomed Inform 2006 Dec;39(6):626-36

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153204640500112
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http://dx.doi.org/10.1016/j.jbi.2005.10.006DOI Listing
December 2006

Patterns of usage for a Web-based clinical information system.

Stud Health Technol Inform 2004 ;107(Pt 1):18-22

Department of Biomedical Informatics, Columbia University, 622 W. 168th Street, Vanderbilt Clinic 5th Floor, New York, NY 10032, USA.

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June 2005

Approach to mobile information and communication for health care.

Int J Med Inform 2004 Aug;73(7-8):631-8

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1016/j.ijmedinf.2004.04.013DOI Listing
August 2004

Development of infobuttons in a wireless environment.

AMIA Annu Symp Proc 2003 :906

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1480206PMC
December 2004

Automated discovery of patient-specific clinician information needs using clinical information system log files.

AMIA Annu Symp Proc 2003 :145-9

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1480002PMC
December 2004

PalmCIS: a wireless handheld application for satisfying clinician information needs.

J Am Med Inform Assoc 2004 Jan-Feb;11(1):19-28. Epub 2003 Oct 5.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1197/jamia.M1387DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC305454PMC
February 2004