Elisa Ficarra

Elisa Ficarra

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Elisa Ficarra

Elisa Ficarra

Publications by authors named "Elisa Ficarra"

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A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans.

Int J Mol Sci 2019 Apr 2;20(7). Epub 2019 Apr 2.

Politecnico di Torino, Department of Control and Computer Engineering, Corso Duca Degli Abruzzi 24, 10129 Torino, Italy.

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http://dx.doi.org/10.3390/ijms20071645DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6480333PMC
April 2019

Exploiting Gene Expression Profiles for the Automated Prediction of Connectivity between Brain Regions.

Int J Mol Sci 2019 Apr 25;20(8). Epub 2019 Apr 25.

Politecnico di Torino (DAUIN), Department of Control and Computer Engineering, Corso Duca Degli Abruzzi 24, 10129 Torino, Italy.

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http://dx.doi.org/10.3390/ijms20082035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6514667PMC
April 2019

FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples.

BMC Bioinformatics 2017 Jan 23;18(1):58. Epub 2017 Jan 23.

Department of Control and Computer Engineering DAUIN, Politecnico di Torino, C.so Duca degli Abruzzi 24, Turin, 10129, Italy.

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http://dx.doi.org/10.1186/s12859-016-1450-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5260008PMC
January 2017

Mining textural knowledge in biological images: Applications, methods and trends.

Comput Struct Biotechnol J 2017 24;15:56-67. Epub 2016 Nov 24.

Dept. of Computer and Control Engineering, Politecnico di Torino, Cso Duca degli Abruzzi 24, Torino 10129, Italy.

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http://dx.doi.org/10.1016/j.csbj.2016.11.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5155047PMC
November 2016

A Novel Gaussian Extrapolation Approach for 2-D Gel Electrophoresis Saturated Protein Spots.

Methods Mol Biol 2016 ;1384:203-11

Department of Control and Computer Engineering, Politecnico di Torino, Corso Duca degli Abruzzi, 24, Torino, 10129, Italy.

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http://dx.doi.org/10.1007/978-1-4939-3255-9_12DOI Listing
August 2016

ANAlyte: A modular image analysis tool for ANA testing with indirect immunofluorescence.

Comput Methods Programs Biomed 2016 May 2;128:86-99. Epub 2016 Mar 2.

Dept. of Computer and Control Engineering, Politecnico di Torino, Cso Duca degli Abruzzi 24, 10129 Torino, Italy.

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http://dx.doi.org/10.1016/j.cmpb.2016.02.005DOI Listing
May 2016

isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation.

BMC Bioinformatics 2016 Mar 31;17:148. Epub 2016 Mar 31.

Department of Control and Computer Engineering DAUIN, Politecnico di Torino,, C.so Duca degli Abruzzi 24, Turin, 10129, IT, Italy.

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http://dx.doi.org/10.1186/s12859-016-0958-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4815201PMC
March 2016

VDJSeq-Solver: in silico V(D)J recombination detection tool.

PLoS One 2015 23;10(3):e0118192. Epub 2015 Mar 23.

Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0118192PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4370828PMC
February 2016

MicroRNA-mRNA interactions underlying colorectal cancer molecular subtypes.

Nat Commun 2015 11 17;6:8878. Epub 2015 Nov 17.

Department of Oncology, Università degli Studi di Torino, S.P. 142, km 3, 95-10060 Candiolo, Italy.

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http://dx.doi.org/10.1038/ncomms9878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4660217PMC
November 2015

Gelsius: a literature-based workflow for determining quantitative associations between genes and biological processes.

IEEE/ACM Trans Comput Biol Bioinform 2013 May-Jun;10(3):619-31

Polytechnic of Turin, Turin.

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http://dx.doi.org/10.1109/TCBB.2013.11DOI Listing
July 2015

Convergent mutations and kinase fusions lead to oncogenic STAT3 activation in anaplastic large cell lymphoma.

Cancer Cell 2015 Apr;27(4):516-32

Department of Molecular Biotechnology and Health Science and Center for Experimental Research and Medical Studies, University of Torino, 10126 Torino, Italy; Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY 10021, USA; Department of Pathology and NYU Cancer Center, New York University School of Medicine, New York, NY 10016, USA. Electronic address:

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http://www.cell.com/cancer-cell/pdf/S1535-6108(15)00094-X.pd
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http://linkinghub.elsevier.com/retrieve/pii/S153561081500094
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http://dx.doi.org/10.1016/j.ccell.2015.03.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5898430PMC
April 2015

An automated approach to the segmentation of HEp-2 cells for the indirect immunofluorescence ANA test.

Comput Med Imaging Graph 2015 Mar 6;40:62-9. Epub 2015 Jan 6.

Dept. of Computer and Control Engineering, Politecnico di Torino, Cso Duca degli Abruzzi 24, 10129 Torino, Italy.

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http://dx.doi.org/10.1016/j.compmedimag.2014.12.005DOI Listing
March 2015

Computational Methods for CLIP-seq Data Processing.

Bioinform Biol Insights 2014 1;8:199-207. Epub 2014 Oct 1.

Department of Control and Computer Engineering, Politecnico di Torino, TO, Italy.

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http://dx.doi.org/10.4137/BBI.S16803DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196881PMC
October 2014

FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks.

Genomics Proteomics Bioinformatics 2014 Aug 19;12(4):178-86. Epub 2014 Aug 19.

Department of Control and Computer Engineering, Politecnico di Torino, Torino 10128, Italy.

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http://dx.doi.org/10.1016/j.gpb.2014.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411368PMC
August 2014

Acceleration of coarse grain molecular dynamics on GPU architectures.

J Comput Chem 2013 Apr 28;34(10):803-18. Epub 2012 Dec 28.

Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy C.so Duca degli Abruzzi 24, Turin 10129, Italy.

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http://dx.doi.org/10.1002/jcc.23183DOI Listing
April 2013

A novel Gaussian extrapolation approach for 2D gel electrophoresis saturated protein spots.

Genomics Proteomics Bioinformatics 2012 Dec 7;10(6):336-44. Epub 2012 Nov 7.

Department of Control and Computer Engineering, Politecnico di Torino, Torino 10129, Italy.

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http://dx.doi.org/10.1016/j.gpb.2012.06.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054705PMC
December 2012

Computer-aided techniques for chromogenic immunohistochemistry: status and directions.

Comput Biol Med 2012 Oct 13;42(10):1012-25. Epub 2012 Sep 13.

Department of Control and Computer Engineering, Politecnico di Torino, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.compbiomed.2012.08.004DOI Listing
October 2012

One decade of development and evolution of microRNA target prediction algorithms.

Genomics Proteomics Bioinformatics 2012 Oct 23;10(5):254-63. Epub 2012 Oct 23.

School of Electronic and Biomedical Engineering, Universidad Antonio Nariño, Bogotá 110311, Colombia.

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http://dx.doi.org/10.1016/j.gpb.2012.10.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054202PMC
October 2012

Multiscale modeling of cellular actin filaments: from atomistic molecular to coarse-grained dynamics.

Proteins 2012 Jun 13;80(6):1598-609. Epub 2012 Mar 13.

Department of Mechanics, Politecnico di Torino, Torino, Italy.

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http://dx.doi.org/10.1002/prot.24053DOI Listing
June 2012

A molecular dynamics study of a miRNA:mRNA interaction.

J Mol Model 2011 Nov 12;17(11):2895-906. Epub 2011 Feb 12.

Department of Control and Computer Engineering, Politecnico di Torino, C.so Duca degli Abruzzi 24, 10129 Turin, Italy.

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http://dx.doi.org/10.1007/s00894-011-0991-xDOI Listing
November 2011

miREE: miRNA recognition elements ensemble.

BMC Bioinformatics 2011 Nov 24;12:454. Epub 2011 Nov 24.

Department of Control and Computer Engineering, Politecnico di Torino, Corso Duca degli Abruzzi 24, 10129 TO, Italy.

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http://dx.doi.org/10.1186/1471-2105-12-454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3265527PMC
November 2011

Automated segmentation of cells with IHC membrane staining.

IEEE Trans Biomed Eng 2011 May 17;58(5):1421-9. Epub 2011 Jan 17.

Department of Control and Computer Engineering, Politecnico di Torino, Torino 10129, Italy.

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http://dx.doi.org/10.1109/TBME.2011.2106499DOI Listing
May 2011

Automatic intrinsic DNA curvature computation from AFM images.

IEEE Trans Biomed Eng 2005 Dec;52(12):2074-86

Politecnico di Torino, DAUIN, Corso Duca degli Abruzzi 24, 10129 Torino, Italy.

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http://ieeexplore.ieee.org/iel5/10/32944/01542458.pdf
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http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumbe
Publisher Site
http://dx.doi.org/10.1109/TBME.2005.857666DOI Listing
December 2005

Automated DNA fragments recognition and sizing through AFM image processing.

IEEE Trans Inf Technol Biomed 2005 Dec;9(4):508-17

Politecnico di Torino, DAUIN, Italy.

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http://dx.doi.org/10.1109/titb.2005.855546DOI Listing
December 2005