Elijah Roberts

Elijah Roberts

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Elijah Roberts

Elijah Roberts

Publications by authors named "Elijah Roberts"

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20Publications

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Neural network control of focal position during time-lapse microscopy of cells.

Sci Rep 2018 May 9;8(1):7313. Epub 2018 May 9.

Department of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.

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May 2018

Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark.

Bioinformatics 2017 01 22;33(2):303-305. Epub 2016 Sep 22.

Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA.

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January 2017

The Chd1 chromatin remodeler can sense both entry and exit sides of the nucleosome.

Nucleic Acids Res 2016 09 12;44(16):7580-91. Epub 2016 May 12.

T.C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA

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September 2016

Gradient sensing by a bistable regulatory motif enhances signal amplification but decreases accuracy in individual cells.

Phys Biol 2016 05 12;13(3):036003. Epub 2016 May 12.

Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA.

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May 2016

A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation.

BMC Biophys 2015 6;9. Epub 2016 Feb 6.

Department of Biophysics, Johns Hopkins University, 3400 N Charles St, Baltimore, USA.

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February 2016

Dynamics of simple gene-network motifs subject to extrinsic fluctuations.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Dec 31;92(6):062717. Epub 2015 Dec 31.

Racah Institute of Physics, Hebrew University of Jerusalem, Jerusalem 91904, Israel.

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December 2015

Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations.

Parallel Comput 2014 May;40(5-6):86-99

Department of Chemistry, University of Illinois at Urbana-Champaign, 600 S. Mathews Ave., Urbana, IL 61801.

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May 2014

Cellular and molecular structure as a unifying framework for whole-cell modeling.

Authors:
Elijah Roberts

Curr Opin Struct Biol 2014 Apr 5;25:86-91. Epub 2014 Feb 5.

Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA. Electronic address:

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April 2014

Cooperation dilemma in finite populations under fluctuating environments.

Phys Rev Lett 2013 Dec 5;111(23):238101. Epub 2013 Dec 5.

Department of Biophysics, Johns Hopkins University, Baltimore, Maryland 21218, USA.

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December 2013

Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population.

Proc Natl Acad Sci U S A 2013 Aug 1;110(34):14006-11. Epub 2013 Aug 1.

Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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August 2013

Extrinsic noise driven phenotype switching in a self-regulating gene.

Phys Rev Lett 2013 Aug 30;111(5):058102. Epub 2013 Jul 30.

Racah Institute of Physics, Hebrew University of Jerusalem, Jerusalem 91904, Israel.

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August 2013

DNA looping increases the range of bistability in a stochastic model of the lac genetic switch.

Phys Biol 2013 Apr 13;10(2):026002. Epub 2013 Feb 13.

Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL, USA.

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April 2013

Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.

J Comput Chem 2013 Jan 25;34(3):245-55. Epub 2012 Sep 25.

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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January 2013

Determining the stability of genetic switches: explicitly accounting for mRNA noise.

Phys Rev Lett 2011 Jun 14;106(24):248102. Epub 2011 Jun 14.

Departments of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

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June 2011

Noise contributions in an inducible genetic switch: a whole-cell simulation study.

PLoS Comput Biol 2011 Mar 10;7(3):e1002010. Epub 2011 Mar 10.

Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.

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March 2011

Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4.

BMC Evol Biol 2009 Jul 29;9:179. Epub 2009 Jul 29.

Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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July 2009

Molecular signatures of ribosomal evolution.

Proc Natl Acad Sci U S A 2008 Sep 3;105(37):13953-8. Epub 2008 Sep 3.

Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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September 2008

Cytochrome c(2) Exit Strategy: Dissociation Studies and Evolutionary Implications.

J Phys Chem B 2007 Jan;111(3):618-34

Department of Chemistry and Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Chemical and Life Sciences Laboratory A544, MC-712, 600 South Mathews Avenue, Urbana, Illinois 61801, USA.

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January 2007

MultiSeq: unifying sequence and structure data for evolutionary analysis.

BMC Bioinformatics 2006 Aug 16;7:382. Epub 2006 Aug 16.

Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA.

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August 2006