Publications by authors named "Ekaterina E Khrameeva"

17Publications

Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.

J Cell Biochem 2019 03 27;120(3):4494-4503. Epub 2018 Sep 27.

Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.

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http://dx.doi.org/10.1002/jcb.27737DOI Listing
March 2019

Neanderthal and Denisovan ancestry in Papuans: A functional study.

J Bioinform Comput Biol 2018 04;16(2):1840011

† Center for Data-Intensive Biomedicine and Biotechnology, Skolkovo Institute for Science and Technology, Moscow, Russia.

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http://dx.doi.org/10.1142/S0219720018400115DOI Listing
April 2018

History of chromosome rearrangements reflects the spatial organization of yeast chromosomes.

J Bioinform Comput Biol 2016 04 28;14(2):1641002. Epub 2016 Jan 28.

3 Department of Physics, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1142/S021972001641002XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4882907PMC
April 2016

Inter-chromosomal contact networks provide insights into Mammalian chromatin organization.

PLoS One 2015 11;10(5):e0126125. Epub 2015 May 11.

Department of Genome Oriented Bioinformatics, Technische Universität München, Wissenschaftszentrum Weihenstephan, Freising, Germany; Institute for Bioinformatics and Systems Biology, HMGU German Research Center for Environmental Health, Neuherberg, Germany; Department of Bioinformatics, St Petersburg State Polytechnical University, St Petersburg, Russia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0126125PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4427453PMC
February 2016

Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans.

Nat Commun 2014 Apr 1;5:3584. Epub 2014 Apr 1.

1] CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai 200031, China [2] Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany.

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http://www.nature.com/articles/ncomms4584
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http://dx.doi.org/10.1038/ncomms4584DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3988804PMC
April 2014

Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments.

BMC Bioinformatics 2012 Apr 19;13 Suppl 6:S4. Epub 2012 Apr 19.

Institute for Information Transmission Problems, Russian Academy of Sciences, 19 Bolshoy Karetny per., Moscow, 127994, Russia.

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http://dx.doi.org/10.1186/1471-2105-13-S6-S4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3358657PMC
April 2012

Spatial proximity and similarity of the epigenetic state of genome domains.

PLoS One 2012 4;7(4):e33947. Epub 2012 Apr 4.

Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0033947PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3319547PMC
August 2012

Evidence for widespread association of mammalian splicing and conserved long-range RNA structures.

RNA 2012 Jan 29;18(1):1-15. Epub 2011 Nov 29.

Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, 119992, GSP-2 Russia.

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http://dx.doi.org/10.1261/rna.029249.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261731PMC
January 2012