Eivind Hovig

Eivind Hovig

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Eivind Hovig

Publications by authors named "Eivind Hovig"

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A snapshot of current genetic testing practice in Lynch syndrome: The results of a representative survey of 33 Latin American existing centres/registries.

Authors:
Adriana Della Valle Benedito Mauro Rossi Edenir Inêz Palmero Marina Antelo Carlos Alberto Vaccaro Francisco López-Kostner Karin Alvarez Marcia Cruz-Correa Luisina Inés Bruno Nora Manoukian Forones Jorge Andres Rugeles Mindiola José Buleje Florencia Spirandelli Mabel Bohorquez Alicia Maria Cock-Rada Yasser Sullcahuaman Ivana Nascimento Kiyoko Abe-Sandes Leonardo S Lino-Silva Florencia Petracchi Alejandra Mampel Yeni Rodriguez Norma Teresa Rossi Claudio Benavides Yañez Cladelis Rubio Tirzah Braz Petta-Lajus Elizabeth Lemos Silveira-Lucas Geiner Jiménez Carlos Mario Muñeton Peña Carlos Reyes-Silva María de la Luz Ayala-Madrigal Julio Sánchez Del Monte Richard Quispe Alcides Recalde Florencia Neffa Carlos Sarroca Henrique de Campos Reis Galvão Mariano Golubicki Tamara A Piñero Pablo G Kalfayan Fabiana Alejandra Ferro Maria Laura Gonzalez Julyann Pérez-Mayoral Celia Aparecida Marques Pimenta Sandra Patricia Bello Uyaban Ana Protzel Guiliana Chávez Milagros Dueñas María Luisa Guevara Gil Enrique Spirandelli Sergio Chialina Magdalena Echeverry Luis José Palacios Fuenmayor Mariela Torres Thais F Bonfim Palma Nadia Cambados Héritas Claudia Martin Alfonso Suárez Michael Vallejo Ana Rafaela de Souza Timoteo Carlos Afanador Ayala Gabriela Jaramillo-Koupermann Jesús Arturo Hernández-Sandoval Angélica Hernandez Guerrero Constantino Dominguez-Barrera Juan Carlos Bazo-Alvarez Patrik Wernhoff John-Paul Plazzer Yesilda Balavarca Eivind Hovig Pål Møller Mev Dominguez-Valentin

Eur J Cancer 2019 Aug 20;119:112-121. Epub 2019 Aug 20.

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2019.07.017DOI Listing
August 2019

From colorectal cancer pattern to the characterization of individuals at risk: Picture for genetic research in Latin America.

Int J Cancer 2019 Jul 5;145(2):318-326. Epub 2018 Dec 5.

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.

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http://doi.wiley.com/10.1002/ijc.31920
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http://dx.doi.org/10.1002/ijc.31920DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6587543PMC
July 2019

Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database.

Genet Med 2019 Jul 24. Epub 2019 Jul 24.

Department of Tumor Biology, Institute of Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1038/s41436-019-0596-9DOI Listing
July 2019

Bioinformatics Approaches to Profile the Tumor Microenvironment for Immunotherapeutic Discovery.

Curr Pharm Des 2017 ;23(32):4716-4725

Department of Clinical Molecular Biology (EpiGen), Division of Medicine, Akershus University Hospital, Lørenskog, and University of Oslo, Oslo. Norway.

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http://dx.doi.org/10.2174/1381612823666170710154936DOI Listing
March 2019

Lack of association between screening interval and cancer stage in Lynch syndrome may be accounted for by over-diagnosis; a prospective Lynch syndrome database report.

Hered Cancer Clin Pract 2019 28;17. Epub 2019 Feb 28.

4Department of Tumor Biology, Institute of Cancer Research, The Norwegian Radium Hospital, part of Oslo University Hospital, Olso, Norway.

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https://hccpjournal.biomedcentral.com/articles/10.1186/s1305
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http://dx.doi.org/10.1186/s13053-019-0106-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394091PMC
February 2019

Causes for Frequent Pathogenic Variants Include Low Penetrance in Fertile Ages, Recurrent De-Novo Mutations and Genetic Drift.

Cancers (Basel) 2019 Jan 23;11(2). Epub 2019 Jan 23.

Department of Tumor Biology, Institute of Cancer Research, The Norwegian Radium Hospital, Part of Oslo University Hospital, Oslo 0424, Norway.

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http://dx.doi.org/10.3390/cancers11020132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6406718PMC
January 2019

Our genes, our selves: hereditary breast cancer and biological citizenship in Norway.

Med Health Care Philos 2018 Jun;21(2):239-242

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1007/s11019-017-9803-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5956028PMC
June 2018

Personal Cancer Genome Reporter: variant interpretation report for precision oncology.

Bioinformatics 2018 05;34(10):1778-1780

Norwegian Cancer Genomics Consortium, Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Norway.

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http://dx.doi.org/10.1093/bioinformatics/btx817DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5946881PMC
May 2018

Retraction Note to: The variant c.68-7 T > A is associated with breast cancer.

Hered Cancer Clin Pract 2018 2;16:10. Epub 2018 May 2.

2Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1186/s13053-018-0093-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5930441PMC
May 2018

Sample-Index Misassignment Impacts Tumour Exome Sequencing.

Sci Rep 2018 03 28;8(1):5307. Epub 2018 Mar 28.

Norwegian Cancer Genomics Consortium, Institute for Cancer Research, The Norwegian Radium Hospital/Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1038/s41598-018-23563-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871786PMC
March 2018

Potentially pathogenic germline CHEK2 c.319+2T>A among multiple early-onset cancer families.

Fam Cancer 2018 01;17(1):141-153

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1007/s10689-017-0011-0DOI Listing
January 2018

The variant c.68-7 T>A is associated with breast cancer.

Hered Cancer Clin Pract 2017 13;15:20. Epub 2017 Nov 13.

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.

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https://hccpjournal.biomedcentral.com/articles/10.1186/s1305
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http://dx.doi.org/10.1186/s13053-017-0080-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5683587PMC
November 2017

Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer.

PLoS One 2013 18;8(6):e66165. Epub 2013 Jun 18.

Department of Tumor Biology, Institute for Cancer Research, Clinic for Cancer, Surgery and Transplantation, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0066165PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3688869PMC
October 2017

Genome build information is an essential part of genomic track files.

Genome Biol 2017 09 14;18(1):175. Epub 2017 Sep 14.

Department of Informatics, University of Oslo, 0316, Oslo, Norway.

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http://dx.doi.org/10.1186/s13059-017-1312-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5599886PMC
September 2017

Reply to Towfic and others' letter to the editor.

Biostatistics 2017 07;18(3):586-587

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital HF - Radiumhospitalet, Montebello, 0310 Oslo, Norway.

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http://dx.doi.org/10.1093/biostatistics/kxx001DOI Listing
July 2017

The rainfall plot: its motivation, characteristics and pitfalls.

BMC Bioinformatics 2017 May 18;18(1):264. Epub 2017 May 18.

Department of Informatics, University of Oslo, Oslo, Norway.

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http://dx.doi.org/10.1186/s12859-017-1679-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437519PMC
May 2017

Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report.

BMC Cancer 2017 01 6;17(1):29. Epub 2017 Jan 6.

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1186/s12885-016-2992-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5219677PMC
January 2017

Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization.

Sci Rep 2016 10 27;6:35985. Epub 2016 Oct 27.

SISSA, International School for Advanced Studies, Trieste, I-34136, Italy.

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http://dx.doi.org/10.1038/srep35985DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5081523PMC
October 2016

Transcriptomic Profiling of Tumor Aggressiveness in Sporadic Nonfunctioning Pancreatic Neuroendocrine Neoplasms.

Pancreas 2016 09;45(8):1196-203

From the *Department of Hepato-Pancreato-Biliary Surgery, Oslo University Hospital; †Institute of Clinical Medicine, University of Oslo; ‡Department of Tumor Biology, Institute for Cancer Research, and §Section for Cancer Cytogenetics, Institute for Cancer Genetics and Informatics, Oslo University Hospital; and ∥Centre for Cancer Biomedicine and ¶Department of Informatics, University of Oslo, Oslo, Norway.

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http://dx.doi.org/10.1097/MPA.0000000000000610DOI Listing
September 2016

Subtype-specific micro-RNA expression signatures in breast cancer progression.

Int J Cancer 2016 09 9;139(5):1117-28. Epub 2016 May 9.

Department of Cancer Genetics, Institute for Cancer Research, Division of Cancer Medicine, Surgery and Transplantation, Oslo University Hospital Radiumhospitalet, Oslo, Norway.

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http://dx.doi.org/10.1002/ijc.30142DOI Listing
September 2016

MITF depletion elevates expression levels of ERBB3 receptor and its cognate ligand NRG1-beta in melanoma.

Oncotarget 2016 Aug;7(34):55128-55140

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.18632/oncotarget.10422DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5342406PMC
August 2016

Profiling networks of distinct immune-cells in tumors.

BMC Bioinformatics 2016 Jul 4;17(1):263. Epub 2016 Jul 4.

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1186/s12859-016-1141-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932723PMC
July 2016

Galaxy Portal: interacting with the galaxy platform through mobile devices.

Bioinformatics 2016 06 27;32(11):1743-5. Epub 2016 Jan 27.

Biomedicial Informatics, Department of Informatics, University of Oslo, Oslo, Norway.

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http://dx.doi.org/10.1093/bioinformatics/btw042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4892412PMC
June 2016

TP53 Mutation Spectrum in Smokers and Never Smoking Lung Cancer Patients.

Front Genet 2016 11;7:85. Epub 2016 May 11.

Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital - The Norwegian Radium HospitalOslo, Norway; Department of Oncology, Oslo University Hospital - The Norwegian Radium HospitalOslo, Norway.

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http://dx.doi.org/10.3389/fgene.2016.00085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863128PMC
May 2016

Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis.

PLoS One 2015 20;10(3):e0119566. Epub 2015 Mar 20.

Department of Informatics, University of Oslo, Oslo, Norway; Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway; Institute for Cancer Genetics and Informatics, Oslo University Hospital, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0119566PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4368827PMC
February 2016

Naive Donor NK Cell Repertoires Associated with Less Leukemia Relapse after Allogeneic Hematopoietic Stem Cell Transplantation.

J Immunol 2016 Feb 8;196(3):1400-11. Epub 2016 Jan 8.

Department of Hematology, Karolinska University Hospital, 14186 Stockholm, Sweden; Center for Infectious Medicine, Karolinska Institutet, 14186 Stockholm, Sweden; Department of Cancer Immunology, Institute for Cancer Research, Oslo University Hospital, 0310 Oslo, Norway; K.G. Jebsen Center for Cancer Immunotherapy, Institute of Clinical Medicine, University of Oslo, 0316 Oslo, Norway

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http://dx.doi.org/10.4049/jimmunol.1501434DOI Listing
February 2016

CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray.

PLoS One 2015 23;10(2):e0117261. Epub 2015 Feb 23.

Research Laboratory and Department of Laboratory Medicine, Nordland Hospital, Bodø, Norway; Faculty of Health Sciences, University of Tromsø, Tromsø, Norway; Center of Molecular Inflammation Research, Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway; Institute of Immunology, Oslo University Hospital Rikshospitalet and University of Oslo, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117261PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338229PMC
January 2016

ClusTrack: feature extraction and similarity measures for clustering of genome-wide data sets.

PLoS One 2015 16;10(4):e0123261. Epub 2015 Apr 16.

Department of Informatics, University of Oslo, Oslo, Norway; Department of Tumour Biology, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway; Department of Medical Informatics, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0123261PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4400084PMC
January 2016

Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses.

Biostatistics 2016 Jan 13;17(1):29-39. Epub 2015 Aug 13.

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital HF - Radiumhospitalet, Montebello, 0310 Oslo, Norway; Institute of Cancer Genetics and Informatics, Oslo University Hospital HF - Radiumhospitalet, Montebello, 0310 Oslo, Norway and Department of Informatics, University of Oslo, 0316 Oslo, Norway

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https://academic.oup.com/biostatistics/article-lookup/doi/10
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http://dx.doi.org/10.1093/biostatistics/kxv027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679072PMC
January 2016

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1038/ncomms10001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682041PMC
December 2015

Automated amplicon design suitable for analysis of DNA variants by melting techniques.

BMC Res Notes 2015 Nov 11;8:667. Epub 2015 Nov 11.

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, Oslo, 0310, Norway.

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http://dx.doi.org/10.1186/s13104-015-1624-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642734PMC
November 2015

Gene expression profiling of Gram-negative bacteria-induced inflammation in human whole blood: The role of complement and CD14-mediated innate immune response.

Genom Data 2015 Sep 30;5:176-83. Epub 2015 May 30.

Research Laboratory, Nordland Hospital, Bodø, Norway ; Faculty of Health Sciences, K.G. Jebsen TREC, University of Tromsø, Tromsø, Norway ; Center of Molecular Inflammation Research, Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway ; Department of Immunology, Oslo University Hospital, K.G. Jebsen IRC, University of Oslo, Oslo, Norway.

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http://dx.doi.org/10.1016/j.gdata.2015.05.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4583639PMC
September 2015

Differential protein network analysis of the immune cell lineage.

Biomed Res Int 2014 21;2014:363408. Epub 2014 Sep 21.

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, 0310 Oslo, Norway ; Biomedical Research Group, Department of Informatics, Faculty of Mathematics and Natural Sciences, University of Oslo, 0310 Oslo, Norway ; Institute of Cancer Genetics and Informatics, The Norwegian Radium Hospital, Oslo University Hospital, 0310 Oslo, Norway.

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http://dx.doi.org/10.1155/2014/363408DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189771PMC
July 2015

Ten modifiers of BRCA1 penetrance validated in a Norwegian series.

Hered Cancer Clin Pract 2015 30;13(1):14. Epub 2015 May 30.

Research Group on Inherited Cancer, Department of Medical Genetics, Oslo University Hospital, The Norwegian Radium Hospital, Oslo, Norway.

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http://dx.doi.org/10.1186/s13053-015-0035-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4456774PMC
June 2015

Investigation of established genetic risk variants for glioma in prediagnostic samples from a population-based nested case-control study.

Cancer Epidemiol Biomarkers Prev 2015 May 20;24(5):810-6. Epub 2015 Feb 20.

Department of Radiation Sciences, Oncology, Umeå University, Umeå, Sweden.

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http://dx.doi.org/10.1158/1055-9965.EPI-14-1106DOI Listing
May 2015

Melanoma brain colonization involves the emergence of a brain-adaptive phenotype.

Oncoscience 2014 10;1(1):82-94. Epub 2014 Jan 10.

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, 0310, Norway.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4295759PMC
http://dx.doi.org/10.18632/oncoscience.11DOI Listing
January 2015

A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions.

Nucleic Acids Res 2014 Oct 11;42(18):e143. Epub 2014 Aug 11.

Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, N-0424 Oslo, Norway Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, PO Box 4950, Nydalen, N-0424 Oslo, Norway

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http://dx.doi.org/10.1093/nar/gku738DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191384PMC
October 2014

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization.

Bioinformatics 2014 Jun 7;30(11):1620-2. Epub 2014 Feb 7.

Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, NorwayInstitute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, NorwayInstitute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, PO Box 4950, Nydalen, 0424 Oslo, Department of Mathematics, University of Oslo, Problemveien 7, 0313 Oslo and ELIXIR project, Department of Informatics, University of Oslo, Problemveien 7, 0313 Oslo, Norway.

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http://dx.doi.org/10.1093/bioinformatics/btu082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4029040PMC
June 2014

Performance comparison of four exome capture systems for deep sequencing.

BMC Genomics 2014 Jun 9;15:449. Epub 2014 Jun 9.

Department of Tumor Biology, Oslo University Hospital, Norwegian Radium Hospital, 0310 Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2164-15-449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4092227PMC
June 2014

Identifying pathogenic processes by integrating microarray data with prior knowledge.

BMC Bioinformatics 2014 Apr 24;15:115. Epub 2014 Apr 24.

Bioinformatics Core Facility, Institute for Medical Informatics, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2105-15-115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006456PMC
April 2014

From proteomes to complexomes in the era of systems biology.

Proteomics 2014 Jan;14(1):24-41

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1002/pmic.201300230DOI Listing
January 2014

Substantial loss of conserved and gain of novel MicroRNA families in flatworms.

Mol Biol Evol 2013 Dec 11;30(12):2619-28. Epub 2013 Sep 11.

Department for Research and Collections, Natural History Museum, University of Oslo, Oslo, Norway.

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http://dx.doi.org/10.1093/molbev/mst155DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3840308PMC
December 2013

Ten simple rules for reproducible computational research.

PLoS Comput Biol 2013 Oct 24;9(10):e1003285. Epub 2013 Oct 24.

Department of Informatics, University of Oslo, Blindern, Oslo, Norway ; Centre for Cancer Biomedicine, University of Oslo, Blindern, Oslo, Norway.

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http://dx.doi.org/10.1371/journal.pcbi.1003285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3812051PMC
October 2013

Enhancing nucleic acid delivery by photochemical internalization.

Ther Deliv 2013 Sep;4(9):1125-40

Department of Tumor Biology, Institute of Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Montebello, NO-0310 Oslo, Norway.

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http://dx.doi.org/10.4155/tde.13.78DOI Listing
September 2013

Light-induced mRNA transfection.

Methods Mol Biol 2013 ;969:89-100

Department of Tumor Biology, Institute of Cancer Research, Oslo University Hospital, Montebello, Oslo, Norway.

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http://dx.doi.org/10.1007/978-1-62703-260-5_6DOI Listing
June 2013

Predicting physical interactions between protein complexes.

Mol Cell Proteomics 2013 Jun 25;12(6):1723-34. Epub 2013 Feb 25.

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital and Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1074/mcp.O112.019828DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3675826PMC
June 2013

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements.

Nucleic Acids Res 2013 May 9;41(10):5164-74. Epub 2013 Apr 9.

Section for Medical Informatics, The Norwegian Radium Hospital, Oslo University Hospital, PO Box 4950, Nydalen, N-0424 Oslo, Norway.

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http://dx.doi.org/10.1093/nar/gkt227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664813PMC
May 2013

Understanding the melanocyte distribution in human epidermis: an agent-based computational model approach.

PLoS One 2012 9;7(7):e40377. Epub 2012 Jul 9.

Centre for Integrative Genetics (CIGENE), Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0040377PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392240PMC
April 2013

Evaluation of biodegradable peptide carriers for light-directed targeting.

Nucleic Acid Ther 2013 Apr 13;23(2):131-9. Epub 2013 Feb 13.

Department of Tumor Biology, Institute for Cancer Research , The Norwegian Radium Hospital, Oslo, Norway .

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http://dx.doi.org/10.1089/nat.2012.0403DOI Listing
April 2013

Light-controlled modulation of gene expression using polyamidoamine formulations.

Nucleic Acid Ther 2013 Apr 26;23(2):160-5. Epub 2013 Mar 26.

Department of Tumor Biology, Institute for Cancer Research , The Norwegian Radium Hospital, Montebello, Norway.

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http://dx.doi.org/10.1089/nat.2012.0413DOI Listing
April 2013

CellLineMiner: a knowledge portal for human cell lines.

Bioinformation 2012 13;8(22):1119-22. Epub 2012 Nov 13.

Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital - Oslo University Hospital, Norway.

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http://dx.doi.org/10.6026/97320630081119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3523228PMC
December 2012

[Genome sequencing for personalized cancer treatment].

Tidsskr Nor Laegeforen 2012 Nov;132(21):2406-8

Genombiologigruppa, Seksjon for kreftforebygging, Institutt for kreftforskning, Oslo universitetssykehus, -Radiumhospitalet, Oslo, Norway.

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November 2012

A primer on the current state of microarray technologies.

Methods Mol Biol 2012 ;802:3-17

Harvard Catalyst - Laboratory for Innovative Translational Technologies, Harvard Medical School, Boston, MA, USA.

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http://dx.doi.org/10.1007/978-1-61779-400-1_1DOI Listing
April 2012

Performance comparison of multiple microarray platforms for gene expression profiling.

Methods Mol Biol 2012 ;802:141-55

Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Montebello, Oslo, Norway.

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http://dx.doi.org/10.1007/978-1-61779-400-1_10DOI Listing
April 2012

Potent gene silencing in vitro at physiological pH using chitosan polymers.

Nucleic Acid Ther 2012 Apr;22(2):96-102

Department of Tumor Biology, Institute of Cancer Research, The Norwegian Radium Hospital, Montebello, Norway.

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http://www.liebertpub.com/doi/10.1089/nat.2011.0335
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http://dx.doi.org/10.1089/nat.2011.0335DOI Listing
April 2012

Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection.

BMC Syst Biol 2012 Feb 8;6:11. Epub 2012 Feb 8.

Centre for Integrative Genetics, Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, 1430 Ås, Norway.

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http://dx.doi.org/10.1186/1752-0509-6-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3341200PMC
February 2012

Identifying elemental genomic track types and representing them uniformly.

BMC Bioinformatics 2011 Dec 30;12:494. Epub 2011 Dec 30.

Department of Tumor Biology, The Norwegian Radium Hospital, Oslo University Hospital, Montebello, 0310 Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2105-12-494DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315820PMC
December 2011

Light-directed delivery of nucleic acids.

Methods Mol Biol 2011 ;764:107-21

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, Oslo, N-0310, Norway.

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http://dx.doi.org/10.1007/978-1-61779-188-8_7DOI Listing
October 2011

A novel photosensitizer for light-controlled gene silencing.

Nucleic Acid Ther 2011 Oct;21(5):359-67

Department of Tumor Biology, Institute of Cancer Research, Oslo University Hospital, Norway.

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http://www.liebertpub.com/doi/10.1089/nat.2011.0309
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http://dx.doi.org/10.1089/nat.2011.0309DOI Listing
October 2011

Genome wide single cell analysis of chemotherapy resistant metastatic cells in a case of gastroesophageal adenocarcinoma.

BMC Cancer 2011 Oct 20;11:455. Epub 2011 Oct 20.

Oslo University Hospital, Division for Cancer and Surgery, Department of Oncology, The Norwegian Radium Hospital, Nydalen, N-0424 Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2407-11-455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3208621PMC
October 2011

Cell sampling and global nucleic acid amplification.

SEB Exp Biol Ser 2008 ;61:17-36

Department of Tumour Biology, Institute for Cancer Research, Norwegian Radium Hospital, Montebello, Norway.

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July 2011

Immunological network signatures of cancer progression and survival.

BMC Med Genomics 2011 Mar 31;4:28. Epub 2011 Mar 31.

Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.

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http://dx.doi.org/10.1186/1755-8794-4-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3094196PMC
March 2011

Impact of DNA physical properties on local sequence bias of human mutation.

Hum Mutat 2010 Dec 16;31(12):1316-25. Epub 2010 Nov 16.

Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, Norwegian Radium Hospital, Norway.

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http://dx.doi.org/10.1002/humu.21371DOI Listing
December 2010

Cyclodextrin-containing polymer delivery system for light-directed siRNA gene silencing.

Oligonucleotides 2010 Aug;20(4):175-82

Department of Tumor Biology, Institute of Cancer Research, The Norwegian Radium Hospital, Montebello, Oslo, Norway.

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http://dx.doi.org/10.1089/oli.2010.0230DOI Listing
August 2010

Light-induced gene expression using messenger RNA molecules.

Oligonucleotides 2010 Feb;20(1):1-6

Department of Tumor Biology, The Norwegian Radium Hospital, Rikshospitalet HF, Oslo 0310, Norway.

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http://dx.doi.org/10.1089/oli.2009.0209DOI Listing
February 2010

Upregulation of stem cell genes in multidrug resistant K562 leukemia cells.

Leuk Res 2009 Oct 24;33(10):1379-85. Epub 2009 Apr 24.

Department of Clinical Pharmacology, Oslo University Hospital Rikshospitalet, Norway.

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http://dx.doi.org/10.1016/j.leukres.2009.03.028DOI Listing
October 2009

The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts.

Nucleic Acids Res 2009 Sep 17;37(17):5749-56. Epub 2009 Jul 17.

Centre for Molecular Biology and Neuroscience, Institute of Medical Microbiology, Oslo University Hospital, Rikshospitalet, NO-0027, Oslo, Norway.

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http://dx.doi.org/10.1093/nar/gkp590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2761265PMC
September 2009

The mathematics of tanning.

BMC Syst Biol 2009 Jun 9;3:60. Epub 2009 Jun 9.

Centre for Integrative Genetics (CIGENE), Norwegian University of Life Sciences (UMB), PO Box 5003, 1432 As, Norway.

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http://dx.doi.org/10.1186/1752-0509-3-60DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714304PMC
June 2009

Segmentation of DNA sequences into twostate regions and melting fork regions.

J Phys Condens Matter 2009 Jan 17;21(3):034109. Epub 2008 Dec 17.

Department of Medical Informatics, Norwegian Radium Hospital, N-0310 Oslo, Norway. Department of Mathematics, University of Oslo, N-0316 Oslo, Norway.

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January 2009

Large-scale inference of the point mutational spectrum in human segmental duplications.

BMC Genomics 2009 Jan 22;10:43. Epub 2009 Jan 22.

Department of Informatics, University of Oslo, PO Box 1080 Blindern, NO-0316 Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2164-10-43DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2640414PMC
January 2009

Methods for quantitation of gene expression.

Front Biosci (Landmark Ed) 2009 Jan 1;14:552-69. Epub 2009 Jan 1.

Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, 0310 Oslo, Norway.

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January 2009

Activation of NF-kappaB by extracellular S100A4: analysis of signal transduction mechanisms and identification of target genes.

Int J Cancer 2008 Sep;123(6):1301-10

Department of Tumor Biology, Rikshospitalet-Radiumhospitalet Medical Center, Montebello, N-0310 Oslo, Norway.

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http://dx.doi.org/10.1002/ijc.23617DOI Listing
September 2008

Evaluation of various polyethylenimine formulations for light-controlled gene silencing using small interfering RNA molecules.

Oligonucleotides 2008 Jun;18(2):123-32

Department of Tumor Biology, Institute of Cancer Research, The Norwegian Radium Hospital, Oslo, Norway.

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http://www.liebertonline.com/doi/abs/10.1089/oli.2008.0131
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http://dx.doi.org/10.1089/oli.2008.0131DOI Listing
June 2008

Validation of oligoarrays for quantitative exploration of the transcriptome.

BMC Genomics 2008 May 30;9:258. Epub 2008 May 30.

Department of Tumor Biology, Institute for Cancer Research, Norwegian Radium Hospital, Montebello, Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2164-9-258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2430212PMC
May 2008