Eiichi Mizohata

Eiichi Mizohata

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Eiichi Mizohata

Publications by authors named "Eiichi Mizohata"

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The C-terminal flexible region of branched-chain polyamine synthase facilitates substrate specificity and catalysis.

FEBS J 2019 Oct 21;286(19):3926-3940. Epub 2019 Jun 21.

Department of Bioscience, Graduate School of Science and Technology, Kwansei-Gakuin University, Sanda, Japan.

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http://dx.doi.org/10.1111/febs.14949DOI Listing
October 2019

Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface.

Structure 2019 03 27;27(3):519-527.e5. Epub 2018 Dec 27.

Department of Bioengineering, School of Engineering, The University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo 113-8656, Japan; Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 4-6-1, Shirokanedai, Minato-ku, Tokyo 108-8639, Japan; Institute of Medical Science, The University of Tokyo, 4-6-1, Shirokanedai, Minato-ku, Tokyo 108-8639, Japan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09692126183042
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http://dx.doi.org/10.1016/j.str.2018.11.002DOI Listing
March 2019

Learning RuBisCO's birth and subsequent environmental adaptation.

Biochem Soc Trans 2019 02 17;47(1):179-185. Epub 2018 Dec 17.

Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan

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http://dx.doi.org/10.1042/BST20180449DOI Listing
February 2019

Isolation and characterization of 4-hydroxy-3-methylbut-2-enyl diphosphate reductase gene from Botryococcus braunii, race B.

J Plant Res 2018 Sep 3;131(5):839-848. Epub 2018 May 3.

Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo, Tokyo, 113-8657, Japan.

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http://link.springer.com/10.1007/s10265-018-1039-4
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http://dx.doi.org/10.1007/s10265-018-1039-4DOI Listing
September 2018

Docking analysis of models for 4-hydroxy-3-methylbut-2-enyl diphosphate reductase and a ferredoxin from , race B.

Plant Biotechnol (Tokyo) 2018 Sep;35(3):297-301

Laboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo, Tokyo 113-8657, Japan.

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http://dx.doi.org/10.5511/plantbiotechnology.18.0601aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6879371PMC
September 2018

Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.

Acta Crystallogr D Struct Biol 2018 Aug 24;74(Pt 8):769-777. Epub 2018 Jul 24.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://scripts.iucr.org/cgi-bin/paper?S2059798318010082
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http://dx.doi.org/10.1107/S2059798318010082DOI Listing
August 2018

Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology.

Biophys Rev 2018 Apr 1;10(2):209-218. Epub 2017 Dec 1.

RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan.

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http://dx.doi.org/10.1007/s12551-017-0344-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5899704PMC
April 2018

Loop of Streptomyces Feruloyl Esterase Plays an Important Role in the Enzyme's Catalyzing the Release of Ferulic Acid from Biomass.

Appl Environ Microbiol 2018 02 17;84(3). Epub 2018 Jan 17.

Research Institute for Biological Sciences, Okayama Prefectural Technology Center for Agriculture, Forestry, and Fisheries, Kaga-gun, Okayama, Japan

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http://dx.doi.org/10.1128/AEM.02300-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772227PMC
February 2018

Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine.

FEBS J 2017 11 22;284(21):3684-3701. Epub 2017 Sep 22.

Department of Bioscience, Graduate School of Science and Technology, Kwansei-Gakuin University, Sanda, Japan.

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http://doi.wiley.com/10.1111/febs.14262
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http://dx.doi.org/10.1111/febs.14262DOI Listing
November 2017

Structural insights into a secretory abundant heat-soluble protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus.

FEBS Lett 2017 08 8;591(16):2458-2469. Epub 2017 Aug 8.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, Osaka, Japan.

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http://dx.doi.org/10.1002/1873-3468.12752DOI Listing
August 2017

Structural basis for intramolecular interaction of post-translationally modified H-Ras•GTP prepared by protein ligation.

FEBS Lett 2017 08 2;591(16):2470-2481. Epub 2017 Aug 2.

Division of Molecular Biology, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, Chuo-ku, Kobe, Japan.

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http://dx.doi.org/10.1002/1873-3468.12759DOI Listing
August 2017

Structural Flexibility of an Inhibitor Overcomes Drug Resistance Mutations in Staphylococcus aureus FtsZ.

ACS Chem Biol 2017 07 16;12(7):1947-1955. Epub 2017 Jun 16.

Department of Biotechnology, College of Life Sciences, Ritsumeikan University , 1-1-1 Noji-higashi, Shiga 525-8577, Japan.

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http://pubs.acs.org/doi/10.1021/acschembio.7b00323
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http://dx.doi.org/10.1021/acschembio.7b00323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705026PMC
July 2017

Identification of the key interactions in structural transition pathway of FtsZ from Staphylococcus aureus.

J Struct Biol 2017 05 27;198(2):65-73. Epub 2017 Apr 27.

Department of Biotechnology, College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jsb.2017.04.008DOI Listing
May 2017

New molecular packing in a crystal of pseudoazurin from Alcaligenes faecalis: a double-helical arrangement of blue copper.

Acta Crystallogr F Struct Biol Commun 2017 03 28;73(Pt 3):159-166. Epub 2017 Feb 28.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1107/S2053230X17002631DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5349310PMC
March 2017

A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea.

Nat Commun 2017 01 13;8:14007. Epub 2017 Jan 13.

Graduate School of Human Development and Environment, Kobe University, 3-11 Tsurukabuto, Nada-Ku, Kobe 657-8501, Japan.

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http://dx.doi.org/10.1038/ncomms14007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5241800PMC
January 2017

Crystal Structures and Coordination Behavior of Aqua- and Cyano-Co(III) Tetradehydrocorrins in the Heme Pocket of Myoglobin.

Inorg Chem 2016 Feb 13;55(3):1287-95. Epub 2016 Jan 13.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University , Suita 565-0871, Japan.

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http://dx.doi.org/10.1021/acs.inorgchem.5b02598DOI Listing
February 2016

Insights into unknown foreign ligand in copper nitrite reductase.

Biochem Biophys Res Commun 2015 Aug 9;464(2):622-8. Epub 2015 Jul 9.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2015.07.025DOI Listing
August 2015

Crystal structure of streptavidin mutant with low immunogenicity.

J Biosci Bioeng 2015 Jun 26;119(6):642-7. Epub 2014 Nov 26.

Radioisotope Center, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jbiosc.2014.10.025DOI Listing
June 2015

Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.

J Biochem 2015 Jun 2;157(6):467-75. Epub 2015 Feb 2.

Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan; Graduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan; Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo 153-8904, Japan; and Radioisotope Center, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan

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http://dx.doi.org/10.1093/jb/mvv004DOI Listing
June 2015

The N-terminal acidic residue of the cytosolic helix 8 of an odorant receptor is responsible for different response dynamics via G-protein.

FEBS Lett 2015 Apr 31;589(10):1136-42. Epub 2015 Mar 31.

Health Research Institute, National Institute of Advanced Industrial Science and Technology, 3-11-46 Nakoji, Amagasaki, Hyogo 661-0974, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.febslet.2015.03.025DOI Listing
April 2015

Water-mediated recognition of simple alkyl chains by heart-type fatty-acid-binding protein.

Angew Chem Int Ed Engl 2015 Jan 9;54(5):1508-11. Epub 2014 Dec 9.

JST-ERATO and Graduate School of Science, Osaka University, Machikaneyama, Toyonaka, Osaka 560-0043 (Japan); Project Research Centre for Fundamental Science, Osaka University, Machikaneyama, Toyonaka, Osaka 560-0043 (Japan).

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http://dx.doi.org/10.1002/anie.201409830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4471613PMC
January 2015

Co(II)/Co(I) reduction-induced axial histidine-flipping in myoglobin reconstituted with a cobalt tetradehydrocorrin as a methionine synthase model.

Chem Commun (Camb) 2014 Oct;50(83):12560-3

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan.

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http://xlink.rsc.org/?DOI=C4CC05448B
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http://dx.doi.org/10.1039/c4cc05448bDOI Listing
October 2014

Crystal structure of FtsA from Staphylococcus aureus.

FEBS Lett 2014 May 18;588(10):1879-85. Epub 2014 Apr 18.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.febslet.2014.04.008DOI Listing
May 2014

Fabrication of poly(γ-glutamic acid) monolith by thermally induced phase separation and its application.

J Microbiol Biotechnol 2013 ;23(7):942-52

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan.

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http://dx.doi.org/10.4014/jmb.1302.02030DOI Listing
February 2014

Structural insights into the function of a thermostable copper-containing nitrite reductase.

J Biochem 2014 Feb 30;155(2):123-35. Epub 2013 Nov 30.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan; Department of Chemistry, Graduate School of Science, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka 560-0043, Japan; Department of Applied Chemistry, School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan; Faculty of Life and Environmental Sciences, Department of Environmental Information, Kyoto Prefectural University, Shimogamo-Hanki-cho, Sakyou, Kyoto 606-8522, Japan; Molecular-Recognition Structure Analysis Team, Molecular Profiling Research Center for Drug Discovery (molprof) National Institute of Advanced Industrial Science and Technology (AIST) 2-3-26 Aomi, Koto-ku, Tokyo 135-0064, Japan; Microbial Genome Research Group, Japan Agency of Marine-Earth Science and Technology, 2-15 Natsushima, Yokosuka, Kanagawa 237-0061, Japan; and RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan.

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http://dx.doi.org/10.1093/jb/mvt107DOI Listing
February 2014

C(sp3)-H bond hydroxylation catalyzed by myoglobin reconstituted with manganese porphycene.

J Am Chem Soc 2013 Nov 7;135(46):17282-5. Epub 2013 Nov 7.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University , Suita, 565-0871, Japan.

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http://dx.doi.org/10.1021/ja409404kDOI Listing
November 2013

Construction and characterization of functional anti-epiregulin humanized monoclonal antibodies.

Biochem Biophys Res Commun 2013 Nov 12;441(4):1011-7. Epub 2013 Nov 12.

Laboratory for Systems Biology and Medicine, Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan; Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2013.11.014DOI Listing
November 2013

Expression, purification, crystallization and preliminary crystallographic study of FtsA from methicillin-resistant Staphylococcus aureus.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 Aug 27;69(Pt 8):895-8. Epub 2013 Jul 27.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1107/S1744309113017727DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3729168PMC
August 2013

Crystallization and preliminary X-ray crystallographic analysis of UDP-glucuronic acid:flavonol-3-O-glucuronosyltransferase (VvGT5) from the grapevine Vitis vinifera.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 Jan 25;69(Pt 1):65-8. Epub 2012 Dec 25.

Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1107/S1744309112045095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3539707PMC
January 2013

Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate.

J Mol Biol 2012 Sep 17;422(1):75-86. Epub 2012 May 17.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1, Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1016/j.jmb.2012.05.014DOI Listing
September 2012

The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase.

J Biochem 2012 Aug 26;152(2):133-8. Epub 2012 Jun 26.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1093/jb/mvs070DOI Listing
August 2012

Crystallization and preliminary X-ray diffraction analysis of mouse prostaglandin F2α synthase, AKR1B3.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2011 Dec 30;67(Pt 12):1630-2. Epub 2011 Nov 30.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, Osaka, Japan.

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http://dx.doi.org/10.1107/S1744309111036165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3232157PMC
December 2011

Structural insight into the stereoselective production of PGF2α by Old Yellow Enzyme from Trypanosoma cruzi.

J Biochem 2011 Nov 12;150(5):563-8. Epub 2011 Aug 12.

Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Yamada-Oka, Suita, Japan.

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https://academic.oup.com/jb/article-lookup/doi/10.1093/jb/mv
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http://dx.doi.org/10.1093/jb/mvr096DOI Listing
November 2011

An evolutionally conserved Lys122 is essential for function in Rhodospirillum rubrum bona fide RuBisCO and Bacillus subtilis RuBisCO-like protein.

Biochem Biophys Res Commun 2010 Feb 12;392(2):212-6. Epub 2010 Jan 12.

Graduate School of Biological Sciences, Nara Institute of Science and Technology (NAIST), 8916-5 Takayama, Ikoma, Nara 630-0101, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2010.01.017DOI Listing
February 2010

Crystal structure of the GAF-B domain from human phosphodiesterase 10A complexed with its ligand, cAMP.

J Biol Chem 2008 Jul 13;283(28):19657-64. Epub 2008 May 13.

Systems and Structural Biology Center, Yokohama Institute, RIKEN, Yokohama 230-0045, Japan.

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http://dx.doi.org/10.1074/jbc.M800595200DOI Listing
July 2008

Crystal structure of an archaeal peroxiredoxin from the aerobic hyperthermophilic crenarchaeon Aeropyrum pernix K1.

J Mol Biol 2005 Nov 22;354(2):317-29. Epub 2005 Sep 22.

RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan.

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http://dx.doi.org/10.1016/j.jmb.2005.09.006DOI Listing
November 2005

Chemical modification of arginine alleviates the decline in activity during catalysis of spinach Rubisco.

Biochem Biophys Res Commun 2003 Feb;301(2):591-7

Department of Materials Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamada-oka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1016/s0006-291x(02)03057-7DOI Listing
February 2003

X-ray structure of Galdieria Rubisco complexed with one sulfate ion per active site.

FEBS Lett 2002 Sep;527(1-3):33-6

Department of Materials Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamada-oka, Suita, Osaka, 565-0871, Japan.

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http://dx.doi.org/10.1016/s0014-5793(02)03148-4DOI Listing
September 2002

Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.

J Mol Biol 2002 Feb;316(3):679-91

Department of Materials Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamada-oka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1006/jmbi.2001.5381DOI Listing
February 2002