Publications by authors named "Edison Ong"

27Publications

Computational design of SARS-CoV-2 spike glycoproteins to increase immunogenicity by T cell epitope engineering.

Comput Struct Biotechnol J 2021 31;19:518-529. Epub 2020 Dec 31.

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.

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December 2020

Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering.

bioRxiv 2020 Aug 14. Epub 2020 Aug 14.

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.

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August 2020

COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning.

Front Immunol 2020 3;11:1581. Epub 2020 Jul 3.

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States.

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August 2020

COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning.

bioRxiv 2020 Mar 21. Epub 2020 Mar 21.

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.

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March 2020

Epitope promiscuity and population coverage of Mycobacterium tuberculosis protein antigens in current subunit vaccines under development.

Infect Genet Evol 2020 06 8;80:104186. Epub 2020 Jan 8.

Department of Epidemiology, School of Public Health, University of Michigan, 500 S State St, Ann Arbor, MI 48109, United States. Electronic address:

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June 2020

VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.

BMC Bioinformatics 2019 Dec 23;20(Suppl 21):704. Epub 2019 Dec 23.

Unit of Laboratory Animal Medicine, University of Michigan, Ann Arbor, MI, USA.

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December 2019

Perform Pathway Enrichment Analysis Using ReactomeFIViz.

Methods Mol Biol 2020 ;2074:165-179

Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA.

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January 2021

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

BMC Bioinformatics 2019 Apr 25;20(Suppl 5):180. Epub 2019 Apr 25.

Department of Biomedical Informatics, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.

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April 2019

ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions.

BMC Bioinformatics 2019 May 1;20(Suppl 7):199. Epub 2019 May 1.

Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, and Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI, 48109, USA.

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May 2019

Victors: a web-based knowledge base of virulence factors in human and animal pathogens.

Nucleic Acids Res 2019 01;47(D1):D693-D700

Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, and Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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January 2019

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.

J Biomed Semantics 2018 01 12;9(1). Epub 2018 Jan 12.

Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.

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January 2018

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.

BMC Bioinformatics 2017 12 21;18(Suppl 17):556. Epub 2017 Dec 21.

Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

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December 2017

Comparison, alignment, and synchronization of cell line information between CLO and EFO.

BMC Bioinformatics 2017 12 21;18(Suppl 17):557. Epub 2017 Dec 21.

Center of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

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December 2017

Identification of New Features from Known Bacterial Protective Vaccine Antigens Enhances Rational Vaccine Design.

Front Immunol 2017 26;8:1382. Epub 2017 Oct 26.

Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, United States.

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October 2017

Conservation in gene encoding Mycobacterium tuberculosis antigen Rv2660 and a high predicted population coverage of H56 multistage vaccine in South Africa.

Infect Genet Evol 2017 11 21;55:244-250. Epub 2017 Sep 21.

Department of Epidemiology, School of Public Health, University of Michigan, 1415 Washington Heights, Ann Arbor, MI 48109-2029, United States. Electronic address:

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November 2017

Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology.

Int J Mol Sci 2017 Feb 21;18(2). Epub 2017 Feb 21.

Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.

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February 2017

Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia.

AMIA Jt Summits Transl Sci Proc 2016 20;2016:65-74. Epub 2016 Jul 20.

University of Michigan Medical School, Ann Arbor, MI.

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August 2016

Combinations of Kinase Inhibitors Protecting Myoblasts against Hypoxia.

PLoS One 2015 4;10(6):e0126718. Epub 2015 Jun 4.

Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.

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February 2016

Identification of drug combinations containing imatinib for treatment of BCR-ABL+ leukemias.

PLoS One 2014 16;9(7):e102221. Epub 2014 Jul 16.

Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.

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March 2015