Publications by authors named "Eamonn A Gaffney"

81Publications

Turing Patterning in Stratified Domains.

Bull Math Biol 2020 Oct 15;82(10):136. Epub 2020 Oct 15.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, UK.

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http://dx.doi.org/10.1007/s11538-020-00809-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7561598PMC
October 2020

CDC-42 Interactions with Par Proteins Are Critical for Proper Patterning in Polarization.

Cells 2020 Sep 5;9(9). Epub 2020 Sep 5.

Department of Mathematics, The Ohio State University, Columbus, OH 43210, USA.

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http://dx.doi.org/10.3390/cells9092036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7565983PMC
September 2020

Computer-assisted beat-pattern analysis and the flagellar waveforms of bovine spermatozoa.

R Soc Open Sci 2020 Jun 17;7(6):200769. Epub 2020 Jun 17.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, UK.

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http://dx.doi.org/10.1098/rsos.200769DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7353979PMC
June 2020

Identifying and characterising the impact of excitability in a mathematical model of tumour-immune interactions.

J Theor Biol 2020 Sep 19;501:110250. Epub 2020 Mar 19.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Woodstock Road, Oxford, OX2 6GG, UK.

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http://dx.doi.org/10.1016/j.jtbi.2020.110250DOI Listing
September 2020

Coloured Noise from Stochastic Inflows in Reaction-Diffusion Systems.

Bull Math Biol 2020 03 20;82(4):44. Epub 2020 Mar 20.

Cardiff School of Mathematics, Cardiff University, Cardiff, UK.

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http://dx.doi.org/10.1007/s11538-020-00719-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7083815PMC
March 2020

Quantifying fiber type-specific local capillary supply.

J Appl Physiol (1985) 2020 02;128(2):458-459

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.1152/japplphysiol.00853.2019DOI Listing
February 2020

Modelling the inclusion of swelling pressure in a tissue level poroviscoelastic model of cartilage deformation.

Math Med Biol 2020 09;37(3):389-428

Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Rd, Oxford OX2 6GG, UK.

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http://dx.doi.org/10.1093/imammb/dqaa001DOI Listing
September 2020

Fluid and solute transport across the retinal pigment epithelium: a theoretical model.

J R Soc Interface 2020 02 5;17(163):20190735. Epub 2020 Feb 5.

Department of Civil, Chemical and Environmental Engineering, University of Genoa, Via Montallegro 1, Genoa 16145, Italy.

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http://dx.doi.org/10.1098/rsif.2019.0735DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061709PMC
February 2020

From one pattern into another: analysis of Turing patterns in heterogeneous domains via WKBJ.

J R Soc Interface 2020 01 15;17(162):20190621. Epub 2020 Jan 15.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford OX2 6GG, UK.

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http://dx.doi.org/10.1098/rsif.2019.0621DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7014807PMC
January 2020

Pattern formation in reaction-diffusion systems with piecewise kinetic modulation: An example study of heterogeneous kinetics.

Phys Rev E 2019 Oct;100(4-1):042220

Department of Mathematics, FNSPE, Czech Technical University in Prague, Prague, Czech Republic.

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http://dx.doi.org/10.1103/PhysRevE.100.042220DOI Listing
October 2019

Combining Mathematical Models With Experimentation to Drive Novel Mechanistic Insights Into Macrophage Function.

Front Immunol 2019 6;10:1283. Epub 2019 Jun 6.

Kennedy Institute of Rheumatology, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.3389/fimmu.2019.01283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563075PMC
October 2020

Flagellar ultrastructure suppresses buckling instabilities and enables mammalian sperm navigation in high-viscosity media.

J R Soc Interface 2019 03;16(152):20180668

2 Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford , Oxford OX2 6GG , UK.

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http://dx.doi.org/10.1098/rsif.2018.0668DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6451407PMC
March 2019

The combined impact of tissue heterogeneity and fixed charge for models of cartilage: the one-dimensional biphasic swelling model revisited.

Biomech Model Mechanobiol 2019 Aug 6;18(4):953-968. Epub 2019 Feb 6.

Mathematical Institute, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1007/s10237-019-01123-7DOI Listing
August 2019

Response of monoflagellate pullers to a shearing flow: A simulation study of microswimmer guidance.

Phys Rev E 2018 Dec;98(6):063111

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, United Kingdom.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6333290PMC
December 2018

Integrated method for quantitative morphometry and oxygen transport modeling in striated muscle.

J Appl Physiol (1985) 2019 03 6;126(3):544-557. Epub 2018 Dec 6.

School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds , Leeds , United Kingdom.

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http://dx.doi.org/10.1152/japplphysiol.00170.2018DOI Listing
March 2019

Boundary behaviours of Leishmania mexicana: A hydrodynamic simulation study.

J Theor Biol 2019 02 20;462:311-320. Epub 2018 Nov 20.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, OX2 6GG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2018.11.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6333917PMC
February 2019

Hydrodynamic Clustering of Human Sperm in Viscoelastic Fluids.

Sci Rep 2018 10 22;8(1):15600. Epub 2018 Oct 22.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, OX2 6GG, UK.

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http://www.nature.com/articles/s41598-018-33584-8
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http://dx.doi.org/10.1038/s41598-018-33584-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6197292PMC
October 2018

Osmotic and electroosmotic fluid transport across the retinal pigment epithelium: A mathematical model.

J Theor Biol 2018 11 7;456:233-248. Epub 2018 Aug 7.

Department of Civil, Chemical and Environmental Engineering, University of Genoa, Via Montallegro 1, Genoa 16145, Italy.

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http://dx.doi.org/10.1016/j.jtbi.2018.08.009DOI Listing
November 2018

Heterogeneity induces spatiotemporal oscillations in reaction-diffusion systems.

Phys Rev E 2018 May;97(5-1):052206

Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.97.052206DOI Listing
May 2018

Theoretical Insights into the Retinal Dynamics of Vascular Endothelial Growth Factor in Patients Treated with Ranibizumab, Based on an Ocular Pharmacokinetic/Pharmacodynamic Model.

Mol Pharm 2018 07 29;15(7):2770-2784. Epub 2018 May 29.

Roche Pharma Research and Early Development, Pharmaceutical Sciences , Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd , Grenzacherstrasse 124 , 4070 Basel , Switzerland.

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http://dx.doi.org/10.1021/acs.molpharmaceut.8b00280DOI Listing
July 2018

Predictive Mathematical Models for the Spread and Treatment of Hyperoxia-induced Photoreceptor Degeneration in Retinitis Pigmentosa.

Invest Ophthalmol Vis Sci 2018 03;59(3):1238-1249

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Oxford, United Kingdom.

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http://dx.doi.org/10.1167/iovs.17-23177DOI Listing
March 2018

Changes in the retreatment radiation tolerance of the spinal cord with time after the initial treatment.

Int J Radiat Biol 2018 06 23;94(6):515-531. Epub 2018 Apr 23.

e Gray Laboratory , CRUK/MRC Oxford Institute for Radiation Oncology, University of Oxford , Oxford , UK.

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http://dx.doi.org/10.1080/09553002.2018.1430911DOI Listing
June 2018

An model of cytotoxic T-lymphocyte activation in the lymph node following short peptide vaccination.

J R Soc Interface 2018 03;15(140)

Kennedy Institute of Rheumatology, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1098/rsif.2018.0041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5908537PMC
March 2018

Human sperm swimming in a high viscosity mucus analogue.

J Theor Biol 2018 06 17;446:1-10. Epub 2018 Feb 17.

Institute for Metabolism and Systems Research, College of Medical and Dental Sciences, University of Birmingham, Birmingham B15 2TT, UK; Centre for Human Reproductive Science, Birmingham Women's and Children's NHS Foundation Trust, Birmingham B15 2TG, UK.

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https://linkinghub.elsevier.com/retrieve/pii/S00225193183006
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http://dx.doi.org/10.1016/j.jtbi.2018.02.013DOI Listing
June 2018

Random blebbing motion: A simple model linking cell structural properties to migration characteristics.

Phys Rev E 2017 Jul 18;96(1-1):012409. Epub 2017 Jul 18.

University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.96.012409DOI Listing
July 2017

Ocular Pharmacokinetics of Therapeutic Antibodies Given by Intravitreal Injection: Estimation of Retinal Permeabilities Using a 3-Compartment Semi-Mechanistic Model.

Mol Pharm 2017 08 3;14(8):2690-2696. Epub 2017 Jul 3.

Clinical Pharmacology, Roche Pharma Research Early Development, Roche Innovation Center Basel , Bldg. 663/2130.12, Hochstrasse 16, 4070 Basel, Switzerland.

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http://pubs.acs.org/doi/10.1021/acs.molpharmaceut.7b00164
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http://dx.doi.org/10.1021/acs.molpharmaceut.7b00164DOI Listing
August 2017

Mathematical models of retinitis pigmentosa: The oxygen toxicity hypothesis.

J Theor Biol 2017 07 6;425:53-71. Epub 2017 May 6.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2017.05.006DOI Listing
July 2017

History dependence and the continuum approximation breakdown: the impact of domain growth on Turing's instability.

Proc Math Phys Eng Sci 2017 Mar 15;473(2199):20160744. Epub 2017 Mar 15.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1098/rspa.2016.0744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378238PMC
March 2017

Coarse-Graining the Fluid Flow around a Human Sperm.

Phys Rev Lett 2017 Mar 23;118(12):124501. Epub 2017 Mar 23.

Institute for Metabolism and Systems Research, College of Medical and Dental Sciences, University of Birmingham, Birmingham B15 2TT, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevLett.118.124501DOI Listing
March 2017

Reply to Baveye and Darnault: Useful models are simple and extendable.

Proc Natl Acad Sci U S A 2017 04 24;114(14):E2804-E2805. Epub 2017 Mar 24.

Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1702303114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389313PMC
April 2017

Microbial competition in porous environments can select against rapid biofilm growth.

Proc Natl Acad Sci U S A 2017 01 22;114(2):E161-E170. Epub 2016 Dec 22.

Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1525228113
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http://dx.doi.org/10.1073/pnas.1525228113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5240682PMC
January 2017

Effect of crosslinking in cartilage-like collagen microstructures.

J Mech Behav Biomed Mater 2017 02 15;66:138-143. Epub 2016 Oct 15.

Botnar Research Centre, NDORMS, University of Oxford, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jmbbm.2016.10.006DOI Listing
February 2017

Mechanical tuning of mammalian sperm behaviour by hyperactivation, rheology and substrate adhesion: a numerical exploration.

J R Soc Interface 2016 11;13(124)

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, UK.

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http://dx.doi.org/10.1098/rsif.2016.0633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5134015PMC
November 2016

An overview of multiphase cartilage mechanical modelling and its role in understanding function and pathology.

J Mech Behav Biomed Mater 2016 09 11;62:139-157. Epub 2016 May 11.

Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, Oxford, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jmbbm.2016.04.032DOI Listing
September 2016

Mathematical and computational models of the retina in health, development and disease.

Prog Retin Eye Res 2016 07 7;53:48-69. Epub 2016 Apr 7.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.preteyeres.2016.04.001DOI Listing
July 2016

Hydrodynamic analysis of flagellated bacteria swimming in corners of rectangular channels.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Dec 16;92(6):063016. Epub 2015 Dec 16.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.92.063016DOI Listing
December 2015

Fock space, symbolic algebra, and analytical solutions for small stochastic systems.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Dec 28;92(6):062714. Epub 2015 Dec 28.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Woodstock Road, Oxford OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.92.062714DOI Listing
December 2015

A Mechanistic Model of the Intravitreal Pharmacokinetics of Large Molecules and the Pharmacodynamic Suppression of Ocular Vascular Endothelial Growth Factor Levels by Ranibizumab in Patients with Neovascular Age-Related Macular Degeneration.

Mol Pharm 2016 09 14;13(9):2941-50. Epub 2016 Jan 14.

Clinical Pharmacology, Roche Pharma Research and Early Development, Roche Innovation Center Basel , Building 663/2130.12, Hochstrasse 16, 4070 Basel, Switzerland.

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http://dx.doi.org/10.1021/acs.molpharmaceut.5b00849DOI Listing
September 2016

Membrane shrinkage and cortex remodelling are predicted to work in harmony to retract blebs.

R Soc Open Sci 2015 Jul 29;2(7):150184. Epub 2015 Jul 29.

University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter , Woodstock Road, Oxford OX2 6GG, UK.

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http://dx.doi.org/10.1098/rsos.150184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4632591PMC
July 2015

A simulation study of sperm motility hydrodynamics near fish eggs and spheres.

J Theor Biol 2016 Jan 2;389:187-97. Epub 2015 Nov 2.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2015.10.013DOI Listing
January 2016

Retinal oxygen distribution and the role of neuroglobin.

J Math Biol 2016 07 14;73(1):1-38. Epub 2015 Sep 14.

Mathematical Institute, University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, UK.

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http://dx.doi.org/10.1007/s00285-015-0931-yDOI Listing
July 2016

Global contraction or local growth, bleb shape depends on more than just cell structure.

J Theor Biol 2015 Sep 29;380:83-97. Epub 2015 Apr 29.

University of Oxford, Andrew Wiles Building, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1016/j.jtbi.2015.04.023DOI Listing
September 2015

Fluid flow and sperm guidance: a simulation study of hydrodynamic sperm rheotaxis.

J R Soc Interface 2015 May;12(106)

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, UK.

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http://dx.doi.org/10.1098/rsif.2015.0172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4424697PMC
May 2015

Hydrodynamic analysis of flagellated bacteria swimming near one and between two no-slip plane boundaries.

Phys Rev E Stat Nonlin Soft Matter Phys 2015 Mar 20;91(3):033012. Epub 2015 Mar 20.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.91.033012DOI Listing
March 2015

Changes to both cardiac metabolism and performance accompany acute reductions in functional capillary supply.

Biochim Biophys Acta 2015 Apr 18;1850(4):681-90. Epub 2014 Dec 18.

School of Biomedical Sciences, University of Leeds, Clarendon Way, Leeds LS2 9JT, United Kingdom.

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http://dx.doi.org/10.1016/j.bbagen.2014.12.014DOI Listing
April 2015

Glucose-lactate metabolic cooperation in cancer: insights from a spatial mathematical model and implications for targeted therapy.

J Theor Biol 2014 Nov 28;361:190-203. Epub 2014 Sep 28.

Instituto de Matemática Aplicada a la Ciencia y la Ingeniería, Universidad de Castilla-La Mancha, Avda. Camilo José Cela, 13071 Ciudad Real, Spain.

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http://dx.doi.org/10.1016/j.jtbi.2014.09.018DOI Listing
November 2014

Spreading speeds for plant populations in landscapes with low environmental variation.

J Theor Biol 2014 Dec 21;363:436-52. Epub 2014 Aug 21.

Wolfson Centre for Mathematical Biology, Mathematical Institute, Radcliffe Observatory Quarter, Woodstock Road, Oxford, Oxfordshire OX2 6GG, UK; Centre for Ecology & Hydrology, Benson Lane, Wallingford, Oxfordshire OX10 8BB, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2014.08.022DOI Listing
December 2014

Swimming efficiency of spherical squirmers: beyond the Lighthill theory.

Phys Rev E Stat Nonlin Soft Matter Phys 2014 Jul 17;90(1):012704. Epub 2014 Jul 17.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.90.012704DOI Listing
July 2014

A study of spermatozoan swimming stability near a surface.

J Theor Biol 2014 Nov 8;360:187-199. Epub 2014 Jul 8.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2014.06.034DOI Listing
November 2014

Cartilage dysfunction in ALS patients as side effect of motion loss: 3D mechano-electrochemical computational model.

Biomed Res Int 2014 3;2014:179070. Epub 2014 Jun 3.

Group of Structural Mechanics and Materials Modelling (GEMM), Aragón Institute of Engineering Research (I3A), University of Zaragoza, 50018 Zaragoza, Spain ; Mechanical Engineering Department, School of Engineering and Architecture (EINA), University of Zaragoza, María de Luna s/n, Betancourt Building, 50018 Zaragoza, Spain ; Biomedical Research Networking Center in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), 50018 Zaragoza, Spain.

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http://dx.doi.org/10.1155/2014/179070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4065674PMC
February 2015

Is pigment cell pattern formation in zebrafish a game of cops and robbers?

Pigment Cell Melanoma Res 2014 Sep 27;27(5):686-7. Epub 2014 Jun 27.

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http://doi.wiley.com/10.1111/pcmr.12276
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http://dx.doi.org/10.1111/pcmr.12276DOI Listing
September 2014

Modelling capillary oxygen supply capacity in mixed muscles: capillary domains revisited.

J Theor Biol 2014 Sep 24;356:47-61. Epub 2014 Apr 24.

School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom.

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http://dx.doi.org/10.1016/j.jtbi.2014.04.016DOI Listing
September 2014

Comparing methods for modelling spreading cell fronts.

J Theor Biol 2014 Jul 12;353:95-103. Epub 2014 Mar 12.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, United Kingdom.

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https://linkinghub.elsevier.com/retrieve/pii/S00225193140009
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http://dx.doi.org/10.1016/j.jtbi.2014.02.023DOI Listing
July 2014

Spreading speeds for stage structured plant populations in fragmented landscapes.

J Theor Biol 2014 May 30;349:135-49. Epub 2014 Jan 30.

Wolfson Centre for Mathematical Biology, Mathematical Institute, Radcliffe Observatory Quarter, Woodstock Road, Oxford, Oxfordshire OX2 6GG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2014.01.024DOI Listing
May 2014

Squirmer dynamics near a boundary.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Dec 2;88(6):062702. Epub 2013 Dec 2.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford OX2 6GG, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.88.062702DOI Listing
December 2013

Incorporating spatial correlations into multispecies mean-field models.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Nov 20;88(5):052713. Epub 2013 Nov 20.

Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, United Kingdom.

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https://link.aps.org/doi/10.1103/PhysRevE.88.052713
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http://dx.doi.org/10.1103/PhysRevE.88.052713DOI Listing
November 2013

Turing's model for biological pattern formation and the robustness problem.

Interface Focus 2012 Aug 8;2(4):487-96. Epub 2012 Feb 8.

Centre for Mathematical Biology, Mathematical Institute, University of Oxford, 24-29 St Giles', Oxford OX1 3PN, UK ; Oxford Centre for Integrative Systems Biology, Department of Biochemistry, University of Oxford, South Parks Road OX1 3QU, UK.

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http://dx.doi.org/10.1098/rsfs.2011.0113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3363041PMC
August 2012

Cellular blebs: pressure-driven, axisymmetric, membrane protrusions.

Biomech Model Mechanobiol 2014 Apr 16;13(2):463-76. Epub 2013 Jul 16.

Mathematical Institute, University of Oxford, 24-29 St Giles, Oxford, OX1 3LB, UK,

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http://dx.doi.org/10.1007/s10237-013-0509-9DOI Listing
April 2014

The counterbend phenomenon in flagellar axonemes and cross-linked filament bundles.

Proc Natl Acad Sci U S A 2013 Jul 3;110(30):12180-5. Epub 2013 Jul 3.

Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, United Kingdom.

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http://dx.doi.org/10.1073/pnas.1302113110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725085PMC
July 2013

Three-sphere swimmer in a nonlinear viscoelastic medium.

Phys Rev E Stat Nonlin Soft Matter Phys 2013 Apr 10;87(4):043006. Epub 2013 Apr 10.

Oxford Centre for Collaborative Applied Mathematics, Mathematical Institute, University of Oxford, Oxford OX1 3LB, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.87.043006DOI Listing
April 2013

A general reaction-diffusion model of acidity in cancer invasion.

J Math Biol 2014 Apr 28;68(5):1199-224. Epub 2013 Mar 28.

Centre for Mathematical Biology, Mathematical Institute, Oxford University, 24-29 St Giles', Oxford, OX1 3LB, UK.

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http://link.springer.com/10.1007/s00285-013-0665-7
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http://dx.doi.org/10.1007/s00285-013-0665-7DOI Listing
April 2014

Effects of intrinsic stochasticity on delayed reaction-diffusion patterning systems.

Phys Rev E Stat Nonlin Soft Matter Phys 2012 May 22;85(5 Pt 1):051914. Epub 2012 May 22.

Centre for Mathematical Biology, Mathematical Institute, University of Oxford, 24-29 St Giles', Oxford, OX1 3LB, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.85.051914DOI Listing
May 2012

Age-related changes in speed and mechanism of adult skeletal muscle stem cell migration.

Stem Cells 2012 Jun;30(6):1182-95

School of Biological Sciences, University of Reading, Reading, United Kingdom.

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June 2012

Theoretical insights into bacterial chemotaxis.

Wiley Interdiscip Rev Syst Biol Med 2012 May-Jun;4(3):247-59. Epub 2012 Mar 12.

School of Biological Sciences, University of Reading, Whiteknights, Reading, UK.

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http://doi.wiley.com/10.1002/wsbm.1168
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January 2013

Stochastic reaction and diffusion on growing domains: understanding the breakdown of robust pattern formation.

Phys Rev E Stat Nonlin Soft Matter Phys 2011 Oct 28;84(4 Pt 2):046216. Epub 2011 Oct 28.

Centre for Mathematical Biology, Mathematical Institute, University of Oxford, 24-29 St Giles', Oxford OX1 3LB, United Kingdom.

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October 2011

Modeling parr-mark pattern formation during the early development of Amago trout.

Phys Rev E Stat Nonlin Soft Matter Phys 2011 Oct 21;84(4 Pt 1):041923. Epub 2011 Oct 21.

Mathematics Institute, University of Warwick, Coventry CV4 7AL, United Kingdom.

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October 2011

Influence of stochastic domain growth on pattern nucleation for diffusive systems with internal noise.

Phys Rev E Stat Nonlin Soft Matter Phys 2011 Oct 3;84(4 Pt 1):041905. Epub 2011 Oct 3.

Centre for Mathematical Biology, Mathematical Institute, University of Oxford, 24-29 St Giles', Oxford OX1 3LB, United Kingdom.

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October 2011

The influence of receptor-mediated interactions on reaction-diffusion mechanisms of cellular self-organisation.

Bull Math Biol 2012 Apr 10;74(4):935-57. Epub 2011 Nov 10.

Department of Mathematics, FNSPE, Czech Technical University in Prague, Prague, Czech Republic.

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http://dx.doi.org/10.1007/s11538-011-9699-4DOI Listing
April 2012

Power spectra methods for a stochastic description of diffusion on deterministically growing domains.

Phys Rev E Stat Nonlin Soft Matter Phys 2011 Aug 10;84(2 Pt 1):021915. Epub 2011 Aug 10.

Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, OX1 3LB, United Kingdom.

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August 2011

A solute gradient in the tear meniscus. II. Implications for lid margin disease, including meibomian gland dysfunction.

Ocul Surf 2011 Apr;9(2):92-7

Nuffield Laboratory of Ophthalmology, University of Oxford, Oxford, UK.

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April 2011

A solute gradient in the tear meniscus. I. A hypothesis to explain Marx's line.

Ocul Surf 2011 Apr;9(2):70-91

Nuffield Laboratory of Ophthalmology, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1016/s1542-0124(11)70014-3DOI Listing
April 2011

The influence of toxicity constraints in models of chemotherapeutic protocol escalation.

Math Med Biol 2011 Dec 6;28(4):357-84. Epub 2011 Apr 6.

School of Mathematics, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.

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http://dx.doi.org/10.1093/imammb/dqr004DOI Listing
December 2011

A mathematical model of tumour and blood pHe regulation: The HCO3-/CO2 buffering system.

Math Biosci 2011 Mar 15;230(1):1-11. Epub 2010 Dec 15.

Centre for Mathematical Biology, Mathematical Institute, Oxford University, 24-29 St. Giles', Oxford, OX1 3LB, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3045481PMC
March 2011

Tumour-stromal interactions in acid-mediated invasion: a mathematical model.

J Theor Biol 2010 Dec 8;267(3):461-70. Epub 2010 Sep 8.

Centre for Mathematical Biology, Mathematical Institute, Oxford University, 24-29 St Giles', Oxford OX1 3LB, UK.

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http://dx.doi.org/10.1016/j.jtbi.2010.08.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3005191PMC
December 2010

Leaky vessels as a potential source of stromal acidification in tumours.

J Theor Biol 2010 Dec 10;267(3):454-60. Epub 2010 Aug 10.

Centre for Mathematical Biology, Mathematical Institute, Oxford University, 24-29 St Giles', Oxford OX1 3LB, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2963718PMC
December 2010

Stability analysis of non-autonomous reaction-diffusion systems: the effects of growing domains.

J Math Biol 2010 Jul 29;61(1):133-64. Epub 2009 Aug 29.

Department of Mathematics, University of Sussex, Mantell Building, Brighton, BN1 9RF, UK.

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http://link.springer.com/10.1007/s00285-009-0293-4
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July 2010

Modelling chemotherapy resistance in palliation and failed cure.

J Theor Biol 2009 Mar 11;257(2):292-302. Epub 2008 Dec 11.

University of Birmingham, Edgbaston, UK.

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March 2009