Dvir Aran

Dvir Aran

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Dvir Aran

Dvir Aran

Publications by authors named "Dvir Aran"

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21Publications

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Development and validation of a machine learning model for prediction of shoulder dystocia.

Ultrasound Obstet Gynecol 2019 Oct 6. Epub 2019 Oct 6.

Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, California, 94158, USA.

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http://dx.doi.org/10.1002/uog.21878DOI Listing
October 2019

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage.

Nat Immunol 2019 02 14;20(2):163-172. Epub 2019 Jan 14.

Division of Pulmonary, Critical Care, Allergy, and Sleep Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1038/s41590-018-0276-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6340744PMC
February 2019

Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma.

EBioMedicine 2018 Jan 6;27:167-175. Epub 2017 Dec 6.

Department of Biomedical Informatics, The Ohio State University, Columbus, OH, United States; Current Address: Department of Medicine, Indiana University School of Medicine, Indianapolis, IN, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2017.12.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5828651PMC
January 2018

xCell: digitally portraying the tissue cellular heterogeneity landscape.

Genome Biol 2017 11 15;18(1):220. Epub 2017 Nov 15.

Institute for Computational Health Sciences, University of California, San Francisco, California, 94158, USA.

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http://dx.doi.org/10.1186/s13059-017-1349-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688663PMC
November 2017

Comprehensive analysis of normal adjacent to tumor transcriptomes.

Nat Commun 2017 10 20;8(1):1077. Epub 2017 Oct 20.

Institute for Computational Health Sciences, University of California, San Francisco, CA, 94158, USA.

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http://dx.doi.org/10.1038/s41467-017-01027-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5651823PMC
October 2017

Cancer Cell-Autonomous Parainflammation Mimics Immune Cell Infiltration.

Cancer Res 2017 07 30;77(14):3740-3744. Epub 2017 Jun 30.

The Lautenberg Center for Immunology and Cancer Research, IMRIC, Hebrew University-Hadassah Medical School, Jerusalem, Israel.

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http://dx.doi.org/10.1158/0008-5472.CAN-16-3383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5518753PMC
July 2017

Digitally deconvolving the tumor microenvironment.

Genome Biol 2016 08 22;17(1):175. Epub 2016 Aug 22.

Institute for Computational Health Sciences, University of California, Mission Hall, 550 16th Street, 4th Floor, Box 0110, San Francisco, CA, 94158-2549, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/s130
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http://dx.doi.org/10.1186/s13059-016-1036-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993002PMC
August 2016

Widespread parainflammation in human cancer.

Genome Biol 2016 07 8;17(1):145. Epub 2016 Jul 8.

The Lautenberg Center for Immunology and Cancer Research, IMRIC, Hebrew University-Hadassah Medical School, Jerusalem, 91120, Israel.

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http://dx.doi.org/10.1186/s13059-016-0995-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937599PMC
July 2016

Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues.

Sci Rep 2016 05 4;6:24799. Epub 2016 May 4.

Institute for Computational Health Sciences, University of California, San Francisco, California, United States of America.

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http://www.nature.com/articles/srep24799
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http://dx.doi.org/10.1038/srep24799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4855174PMC
May 2016

Embryonic Stem Cell (ES)-Specific Enhancers Specify the Expression Potential of ES Genes in Cancer.

PLoS Genet 2016 Feb 17;12(2):e1005840. Epub 2016 Feb 17.

Developmental Biology and Cancer Research, The Institute for Medical Research Israel-Canada (IMRIC), The Hebrew University-Hadassah Medical School, Jerusalem, Israel.

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http://dx.doi.org/10.1371/journal.pgen.1005840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4757527PMC
February 2016

Systematic pan-cancer analysis of tumour purity.

Nat Commun 2015 Dec 4;6:8971. Epub 2015 Dec 4.

Institute for Computational Health Sciences, University of California, San Francisco, California 94158, USA.

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http://dx.doi.org/10.1038/ncomms9971DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4671203PMC
December 2015

Premature aging of leukocyte DNA methylation is associated with type 2 diabetes prevalence.

Clin Epigenetics 2015 28;7:35. Epub 2015 Mar 28.

Department of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem, 91120 Israel.

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http://dx.doi.org/10.1186/s13148-015-0069-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379765PMC
April 2015

Unmasking risk loci: DNA methylation illuminates the biology of cancer predisposition: analyzing DNA methylation of transcriptional enhancers reveals missed regulatory links between cancer risk loci and genes.

Bioessays 2014 Feb 26;36(2):184-90. Epub 2013 Nov 26.

Department of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem, Israel; School of Computer Science and Engineering, Hebrew University, Jerusalem, Israel.

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http://dx.doi.org/10.1002/bies.201300119DOI Listing
February 2014

Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood.

Hum Mol Genet 2012 Jan 12;21(2):371-83. Epub 2011 Oct 12.

Department of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel.

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http://dx.doi.org/10.1093/hmg/ddr472DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3276288PMC
January 2012

Replication timing-related and gene body-specific methylation of active human genes.

Hum Mol Genet 2011 Feb 26;20(4):670-80. Epub 2010 Nov 26.

Department of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, The Hebrew University-Hadassah Medical School, Jerusalem 91120, Israel.

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http://dx.doi.org/10.1093/hmg/ddq513DOI Listing
February 2011