Duc M Duong

Duc M Duong

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Duc M Duong

Publications by authors named "Duc M Duong"

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Proteomics Links Ubiquitin Chain Topology Change to Transcription Factor Activation.

Mol Cell 2019 Oct 20;76(1):126-137.e7. Epub 2019 Aug 20.

State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing 102206, P.R. China; Key Laboratory of Combinatorial Biosynthesis and Drug Discovery of Ministry of Education, School of Pharmaceutical Sciences, School of Medicine, Wuhan University, Wuhan 430072, P.R. China; Guizhou University School of Medicine, Guiyang 550025, P.R. China. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2019.07.001DOI Listing
October 2019

Network Analysis of a Membrane-Enriched Brain Proteome across Stages of Alzheimer's Disease.

Proteomes 2019 Aug 27;7(3). Epub 2019 Aug 27.

Department of Neurology, Emory University School of Medicine, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.3390/proteomes7030030DOI Listing
August 2019

Ionizing Radiation induction of cholesterol biosynthesis in Lung tissue.

Sci Rep 2019 Aug 29;9(1):12546. Epub 2019 Aug 29.

Department of Radiation Oncology, Winship Cancer Institute, Emory University School of Medicine, Atlanta, Georgia, United States of America.

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http://dx.doi.org/10.1038/s41598-019-48972-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6715797PMC
August 2019

Acetylation regulates ribonucleotide reductase activity and cancer cell growth.

Nat Commun 2019 Jul 19;10(1):3213. Epub 2019 Jul 19.

Departments of Radiation Oncology, Emory University School of Medicine and Winship Cancer Institute of Emory University, 1365C Clifton Road NE, Atlanta, GA, 30322, USA.

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http://dx.doi.org/10.1038/s41467-019-11214-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6642173PMC
July 2019

Mass Spectrometry-Based Quantification of Tau in Human Cerebrospinal Fluid Using a Complementary Tryptic Peptide Standard.

J Proteome Res 2019 Jun 29;18(6):2422-2432. Epub 2019 Apr 29.

Department of Neurology, Second Xiangya Hospital , Central South University , Changsha , Hunan 410078 , China.

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http://dx.doi.org/10.1021/acs.jproteome.8b00920DOI Listing
June 2019

Specific Proteomes of Hippocampal Regions CA2 and CA1 Reveal Proteins Linked to the Unique Physiology of Area CA2.

J Proteome Res 2019 Jun 14;18(6):2571-2584. Epub 2019 May 14.

Department of Pharmacology and Chemical Biology, Rollins Research Center , Emory University School of Medicine , Atlanta , Georgia 30322 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.9b00103DOI Listing
June 2019

Trimethylation of Elongation Factor-Tu by the Dual Thermoregulated Methyltransferase EftM Does Not Impact Its Canonical Function in Translation.

Sci Rep 2019 Mar 5;9(1):3553. Epub 2019 Mar 5.

Division of Pulmonology, Allergy/Immunology, Cystic Fibrosis and Sleep, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.

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http://dx.doi.org/10.1038/s41598-019-39331-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6401129PMC
March 2019

Effects of Genotype on Brain Proteomic Network and Cell Type Changes in Alzheimer's Disease.

Front Mol Neurosci 2018 18;11:454. Epub 2018 Dec 18.

Department of Neurology, Emory University School of Medicine, Atlanta, GA, United States.

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http://dx.doi.org/10.3389/fnmol.2018.00454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6305300PMC
December 2018

Quantitative Analysis of the Brain Ubiquitylome in Alzheimer's Disease.

Proteomics 2018 10;18(20):e1800108

Department of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.

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http://dx.doi.org/10.1002/pmic.201800108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283072PMC
October 2018

Deep proteomic network analysis of Alzheimer's disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease.

Mol Neurodegener 2018 10 4;13(1):52. Epub 2018 Oct 4.

Department of Neurology, Emory University School of Medicine, Whitehead Building-Suite 505C, 615 Michael Street, Atlanta, GA, 30322, USA.

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http://dx.doi.org/10.1186/s13024-018-0282-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172707PMC
October 2018

Global quantitative analysis of the human brain proteome in Alzheimer's and Parkinson's Disease.

Sci Data 2018 03 13;5:180036. Epub 2018 Mar 13.

Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.1038/sdata.2018.36DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5848788PMC
March 2018

Integrating Next-Generation Genomic Sequencing and Mass Spectrometry To Estimate Allele-Specific Protein Abundance in Human Brain.

J Proteome Res 2017 09 9;16(9):3336-3347. Epub 2017 Aug 9.

Division of Neurology, Department of Veterans Affairs Medical Center , Decatur, Georgia 30033, United States.

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http://dx.doi.org/10.1021/acs.jproteome.7b00324DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5698003PMC
September 2017

GPRC5A suppresses protein synthesis at the endoplasmic reticulum to prevent radiation-induced lung tumorigenesis.

Nat Commun 2016 06 8;7:11795. Epub 2016 Jun 8.

Department of Radiation Oncology, Emory University School of Medicine and the Winship Cancer Institute, Emory University, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1038/ncomms11795DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4899846PMC
June 2016

Native low density lipoprotein promotes lipid raft formation in macrophages.

Mol Med Rep 2016 Mar 14;13(3):2087-93. Epub 2016 Jan 14.

Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Wuhan University, Wuhan, Hubei 430071, P.R. China.

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http://dx.doi.org/10.3892/mmr.2016.4781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4768993PMC
March 2016

Pseudomonas aeruginosa EftM Is a Thermoregulated Methyltransferase.

J Biol Chem 2016 Feb 16;291(7):3280-90. Epub 2015 Dec 16.

From the Department of Pediatrics, Division of Pulmonology, Allergy/Immunology, Cystic Fibrosis and Sleep and the Emory-Children's Center for Cystic Fibrosis Research, Emory University and Children's Healthcare of Atlanta, Atlanta, Georgia 30322, the Department of Microbiology, Immunology, and Cancer Biology, University of Virginia, Charlottesville, Virginia 22908,

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http://dx.doi.org/10.1074/jbc.M115.706853DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751374PMC
February 2016

Cellular O-Glycome Reporter/Amplification to explore O-glycans of living cells.

Nat Methods 2016 Jan 30;13(1):81-6. Epub 2015 Nov 30.

Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia, USA.

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http://dx.doi.org/10.1038/nmeth.3675DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4697867PMC
January 2016

Delta-secretase cleaves amyloid precursor protein and regulates the pathogenesis in Alzheimer's disease.

Nat Commun 2015 Nov 9;6:8762. Epub 2015 Nov 9.

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1038/ncomms9762DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659940PMC
November 2015

Stress induces p38 MAPK-mediated phosphorylation and inhibition of Drosha-dependent cell survival.

Mol Cell 2015 Feb;57(4):721-734

Department of Pharmacology, Emory University School of Medicine, Atlanta, GA 30322, USA; Department of Neurology, Emory University School of Medicine, Atlanta, GA 30322, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2015.01.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4502444PMC
February 2015

Quantitative phosphoproteomics of Alzheimer's disease reveals cross-talk between kinases and small heat shock proteins.

Proteomics 2015 Jan 17;15(2-3):508-519. Epub 2014 Dec 17.

Department of Biochemistry, Center for Neurodegenerative Disease, Emory University School of Medicine, Atlanta, Georgia 30322.

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http://dx.doi.org/10.1002/pmic.201400189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404162PMC
January 2015

Aggregation properties of the small nuclear ribonucleoprotein U1-70K in Alzheimer disease.

J Biol Chem 2014 Dec 29;289(51):35296-313. Epub 2014 Oct 29.

From the Departments of Biochemistry and the Center for Neurodegenerative Disease, Emory University School of Medicine, Atlanta, Georgia 30322 Neurology,

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http://dx.doi.org/10.1074/jbc.M114.562959DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271217PMC
December 2014

Exploring the potential of the platelet membrane proteome as a source of peripheral biomarkers for Alzheimer's disease.

Alzheimers Res Ther 2013 13;5(3):32. Epub 2013 Jun 13.

Department of Neurology and Center for Neurodegenerative Disease, Emory University School of Medicine, 615 Michael Street NE, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1186/alzrt186DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054949PMC
August 2014

Quantitative proteomics reveals significant changes in cell shape and an energy shift after IPTG induction via an optimized SILAC approach for Escherichia coli.

J Proteome Res 2013 Dec 14;12(12):5978-88. Epub 2013 Nov 14.

State Key Laboratory of Proteomics, National Engineering Research Center for Protein Drugs, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Beijing Institute of Radiation Medicine , Beijing 102206, P. R. China.

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http://dx.doi.org/10.1021/pr400775wDOI Listing
December 2013

Pharmacologic inhibition of ROCK2 suppresses amyloid-β production in an Alzheimer's disease mouse model.

J Neurosci 2013 Dec;33(49):19086-98

Center for Neurodegenerative Disease, and Departments of Neurology, Cell Biology, and Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, Medicinal Chemistry, Translational Research Institute, The Scripps Research Institute, Jupiter, Florida 33458, Department of Pathology, University of Washington, Seattle, Washington 98104, Departments of Pathology and Neurology, Johns Hopkins School of Medicine, Baltimore, Maryland 21205, and Unit of Clinical and Translational Neuroscience and Laboratory of Behavioral Neuroscience, National Institute on Aging, Baltimore, Maryland 21224.

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http://dx.doi.org/10.1523/JNEUROSCI.2508-13.2013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3850036PMC
December 2013

Tissue-type plasminogen activator mediates neuronal detection and adaptation to metabolic stress.

J Cereb Blood Flow Metab 2013 Nov 24;33(11):1761-9. Epub 2013 Jul 24.

Department of Neurology, Center for Neurodegenerative Disease, Emory University School of Medicine, Atlanta, Georgia, USA.

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http://dx.doi.org/10.1038/jcbfm.2013.124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3824174PMC
November 2013

Selective targeting of the cysteine proteome by thioredoxin and glutathione redox systems.

Mol Cell Proteomics 2013 Nov 14;12(11):3285-96. Epub 2013 Aug 14.

Division of Pulmonary, Allergy and Critical Care Medicine, Department of Medicine.

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http://dx.doi.org/10.1074/mcp.M113.030437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820939PMC
November 2013

Abnormal gephyrin immunoreactivity associated with Alzheimer disease pathologic changes.

J Neuropathol Exp Neurol 2013 Nov;72(11):1009-15

From the Department of Neurology (CMH, HR, AIL, JJL, TSW), Center for Neurodegenerative Disease (CMH, HR, NTS, EBD, DMD, MG, AIL, JJL, TSW), Departments of Biochemistry (NTS) and Human Genetics (EBD, TSW), and Pathology and Laboratory Medicine (MG), Emory University School of Medicine, Atlanta, Georgia; Department of Pathology, University of Washington, Seattle, Washington (TJM); Departments of Pathology and Neurology, Johns Hopkins School of Medicine, Baltimore, Maryland (JCT); National Institute of Aging, National Institutes of Health, Bethesda, Maryland (MT); and Atlanta Veterans Administration Medical Center, Atlanta, Georgia (TSW).

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https://academic.oup.com/jnen/article-lookup/doi/10.1097/01.
Publisher Site
http://dx.doi.org/10.1097/01.jnen.0000435847.59828.dbDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4037931PMC
November 2013

Systematic research on the pretreatment of peptides for quantitative proteomics using a C₁₈ microcolumn.

Proteomics 2013 Aug 9;13(15):2229-37. Epub 2013 Jul 9.

State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine, Beijing, P. R. China.

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http://dx.doi.org/10.1002/pmic.201200591DOI Listing
August 2013

Neuron enriched nuclear proteome isolated from human brain.

J Proteome Res 2013 Jul 17;12(7):3193-206. Epub 2013 Jun 17.

Department of Human Genetics, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1021/pr400246tDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734798PMC
July 2013

Proteomic analysis of postsynaptic density in Alzheimer's disease.

Clin Chim Acta 2013 May 26;420:62-8. Epub 2013 Mar 26.

St. Jude Children's Research Hospital, Memphis, TN 38105-3678, United States.

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http://dx.doi.org/10.1016/j.cca.2013.03.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3714371PMC
May 2013

Protein profiling of active cysteine cathepsins in living cells using an activity-based probe containing a cell-penetrating peptide.

J Proteome Res 2012 Dec 30;11(12):5763-72. Epub 2012 Oct 30.

Britton Chance Center for Biomedical Photonics, Department of Biomedical Engineering, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology (HUST), Wuhan, China.

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http://pubs.acs.org/doi/10.1021/pr300575u
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http://dx.doi.org/10.1021/pr300575uDOI Listing
December 2012

Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifications.

J Proteome Res 2012 Sep 10;11(9):4403-12. Epub 2012 Aug 10.

Department of Human Genetics, Center for Neurodegenerative Diseases, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1021/pr300613cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3443408PMC
September 2012

Asparaginyl endopeptidase cleaves TDP-43 in brain.

Proteomics 2012 Aug;12(15-16):2455-63

Department of Neurology, Center for Neurodegenerative Diseases, Emory University School of Medicine, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.1002/pmic.201200006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3787696PMC
August 2012

Protein Cysteines Map to Functional Networks According to Steady-state Level of Oxidation.

J Proteomics Bioinform 2011 Oct;4(10):196-209

Division of Pulmonary, Allergy and Critical Care Medicine, Department of Medicine, Emory Proteomics Service Center, Emory University, Atlanta, Georgia 30322 USA.

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http://dx.doi.org/10.4172/jpb.1000190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352318PMC
October 2011

Phosphoproteomic analysis reveals site-specific changes in GFAP and NDRG2 phosphorylation in frontotemporal lobar degeneration.

J Proteome Res 2010 Dec 22;9(12):6368-79. Epub 2010 Oct 22.

Department of Neurology, the Center for Neurodegenerative Diseases, Laboratory Medicine, and Proteomics Service Center, Emory University School of Medicine, Atlanta, Georgia 30322, United States.

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http://dx.doi.org/10.1021/pr100666cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2997170PMC
December 2010

Systematical optimization of reverse-phase chromatography for shotgun proteomics.

J Proteome Res 2009 Aug;8(8):3944-50

Department of Human Genetics, Center for Neurodegenerative Diseases, Emory University, Atlanta, Georgia 30322, USA.

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http://pubs.acs.org/doi/abs/10.1021/pr900251d
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http://dx.doi.org/10.1021/pr900251dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2749476PMC
August 2009

Identification and characterization of neuronal mitogen-activated protein kinase substrates using a specific phosphomotif antibody.

Mol Cell Proteomics 2009 Apr 3;8(4):681-95. Epub 2008 Dec 3.

The Picower Institute for Learning and Memory, Howard Hughes Medical Institute, RIKEN-MIT Neuroscience Research Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1074/mcp.M800233-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2667352PMC
April 2009

Phosphoproteomic analysis of human brain by calcium phosphate precipitation and mass spectrometry.

J Proteome Res 2008 Jul 30;7(7):2845-51. Epub 2008 May 30.

Department of Human Genetics, The Center for Neurodegenerative Diseases, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1021/pr8000496DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2663965PMC
July 2008

Systematic approach for validating the ubiquitinated proteome.

Anal Chem 2008 Jun 24;80(11):4161-9. Epub 2008 Apr 24.

Department of Human Genetics, Center for Neurodegenerative Diseases, Emory University, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1021/ac702516aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673951PMC
June 2008

Proteomic identification of novel proteins associated with Lewy bodies.

Front Biosci 2008 May 1;13:3850-6. Epub 2008 May 1.

Department of Human Genetics, the Center for Neurodegenerative Diseases, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2663966PMC
http://dx.doi.org/10.2741/2973DOI Listing
May 2008

Merger of laser capture microdissection and mass spectrometry: a window into the amyloid plaque proteome.

Methods Enzymol 2006 ;412:77-93

Department of Human Genetics, Center for Neurodegenerative Diseases, School of Medicine, Emory University, Atlanta, 30322, USA.

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http://dx.doi.org/10.1016/S0076-6879(06)12006-6DOI Listing
November 2006

Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum.

Mol Cell Proteomics 2006 Jun 28;5(6):1158-70. Epub 2006 Feb 28.

Department of Human Genetics, Center for Neurodegenerative Disease, Emory University, Atlanta, Georgia 30322, USA.

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http://dx.doi.org/10.1074/mcp.D500009-MCP200DOI Listing
June 2006

Proteomic characterization of postmortem amyloid plaques isolated by laser capture microdissection.

J Biol Chem 2004 Aug 25;279(35):37061-8. Epub 2004 Jun 25.

Department of Human Genetics, Center for Neurodegenerative Disease, Enory University School of Medicine, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.1074/jbc.M403672200DOI Listing
August 2004

Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry.

J Biol Chem 2004 May 12;279(20):21003-11. Epub 2004 Mar 12.

Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1074/jbc.M400103200DOI Listing
May 2004