Douglas E Soltis

Douglas E Soltis

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Douglas E Soltis

Publications by authors named "Douglas E Soltis"

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For common community phylogenetic analyses, go ahead and use synthesis phylogenies.

Ecology 2019 Sep 9;100(9):e02788. Epub 2019 Jul 9.

Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, Florida, 32611 , USA.

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http://dx.doi.org/10.1002/ecy.2788DOI Listing
September 2019

Effects of taxon sampling and tree reconstruction methods on phylodiversity metrics.

Ecol Evol 2019 Sep 21;9(17):9479-9499. Epub 2019 Aug 21.

Florida Museum of Natural History University of Florida Gainesville FL USA.

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http://dx.doi.org/10.1002/ece3.5425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6745870PMC
September 2019

Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae).

Mol Phylogenet Evol 2019 06 23;135:1-11. Epub 2019 Feb 23.

Systematic & Evolutionary Botany and Biodiversity Group, MOE Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Hangzhou 310058, China. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2019.02.018DOI Listing
June 2019

Plastid phylogenomic insights into the evolution of Caryophyllales.

Mol Phylogenet Evol 2019 05 5;134:74-86. Epub 2019 Feb 5.

Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; Key Laboratory for Plant Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2018.12.023DOI Listing
May 2019

Rates of niche and phenotype evolution lag behind diversification in a temperate radiation.

Proc Natl Acad Sci U S A 2019 May 13;116(22):10874-10882. Epub 2019 May 13.

Florida Museum of Natural History, Gainesville, FL 32611;

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http://dx.doi.org/10.1073/pnas.1817999116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561174PMC
May 2019

Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China.

ISME J 2019 03 23;13(3):686-697. Epub 2018 Oct 23.

State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, East Beijing Road 71, Nanjing, 210008, China.

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http://dx.doi.org/10.1038/s41396-018-0303-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461945PMC
March 2019

Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, the cell, and biomass.

Am J Bot 2019 02 19;106(2):280-291. Epub 2019 Feb 19.

Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA.

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http://dx.doi.org/10.1002/ajb2.1239DOI Listing
February 2019

Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates.

iScience 2019 Jan 8;11:57-70. Epub 2018 Dec 8.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Genetics Institute, University of Florida, Gainesville, FL 32608, USA; Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1016/j.isci.2018.12.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6308250PMC
January 2019

Biodiversity synthesis across the green branches of the tree of life.

Nat Plants 2019 01 31;5(1):11-13. Epub 2018 Dec 31.

Florida Museum of Natural History, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1038/s41477-018-0322-7DOI Listing
January 2019

Nuclear genomes of two magnoliids.

Nat Plants 2019 01;5(1):6-7

Florida Museum of Natural History, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1038/s41477-018-0344-1DOI Listing
January 2019

Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy.

Mol Ecol Resour 2018 Nov 11;18(6):1427-1443. Epub 2018 Sep 11.

Department of Genetics, Development, and Cell Biology, Iowa State University, Ames, Iowa.

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http://dx.doi.org/10.1111/1755-0998.12935DOI Listing
November 2018

Terrestrial species adapted to sea dispersal: Differences in propagule dispersal of two Caribbean mangroves.

Mol Ecol 2018 11 1;27(22):4612-4626. Epub 2018 Nov 1.

Department of Biology, University of Florida, Gainesville, Florida.

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http://dx.doi.org/10.1111/mec.14894DOI Listing
November 2018

Evolution of floral traits and impact of reproductive mode on diversification in the phlox family (Polemoniaceae).

Mol Phylogenet Evol 2018 10 27;127:878-890. Epub 2018 Jun 27.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, United States; Genetics Institute, University of Florida, Gainesville, FL 32610, United States; Biodiversity Institute, University of Florida, Gainesville, FL 32611, United States.

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http://dx.doi.org/10.1016/j.ympev.2018.06.035DOI Listing
October 2018

Climatic niche comparison among ploidal levels in the classic autopolyploid system, Galax urceolata.

Am J Bot 2018 10 21;105(10):1631-1642. Epub 2018 Sep 21.

Florida Museum of Natural History, University of Florida, Gainesville, Florida, 32611, USA.

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http://dx.doi.org/10.1002/ajb2.1161DOI Listing
October 2018

Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia.

Ann Bot 2018 09;122(4):649-668

Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.

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http://dx.doi.org/10.1093/aob/mcy104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153483PMC
September 2018

Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum.

BMC Plant Biol 2018 Sep 24;18(1):208. Epub 2018 Sep 24.

Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, and College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.

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https://bmcplantbiol.biomedcentral.com/articles/10.1186/s128
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http://dx.doi.org/10.1186/s12870-018-1429-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154912PMC
September 2018

The future of cold-adapted plants in changing climates: (Saxifragaceae) as a case study.

Ecol Evol 2018 Jul 25;8(14):7164-7177. Epub 2018 Jun 25.

Florida Museum of Natural History University of Florida Gainesville Florida.

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http://dx.doi.org/10.1002/ece3.4242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6065370PMC
July 2018

Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage.

Mol Phylogenet Evol 2018 06 26;123:88-100. Epub 2018 Feb 26.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1016/j.ympev.2018.02.016DOI Listing
June 2018

Factors promoting polyploid persistence and diversification and limiting diploid speciation during the K-Pg interlude.

Curr Opin Plant Biol 2018 04 27;42:1-7. Epub 2017 Oct 27.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Department of Biology, University of Florida, Gainesville, FL 32611, USA; Genetics Institute, University of Florida, Gainesville, FL 32608, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S13695266173008
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http://dx.doi.org/10.1016/j.pbi.2017.09.010DOI Listing
April 2018

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data.

BMC Genomics 2018 Apr 4;19(1):235. Epub 2018 Apr 4.

Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, and Laboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China.

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http://dx.doi.org/10.1186/s12864-018-4633-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885378PMC
April 2018

Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella.

Curr Opin Plant Biol 2018 04 27;42:81-89. Epub 2018 Apr 27.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; The Genetics Institute, University of Florida, Gainesville, FL 32610, USA; The Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2018.04.003DOI Listing
April 2018

Plastid phylogenomic analysis of green plants: A billion years of evolutionary history.

Am J Bot 2018 Mar 30;105(3):291-301. Epub 2018 Mar 30.

Department of Biology, University of Florida, Gainesville, FL, 32611, USA.

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http://dx.doi.org/10.1002/ajb2.1048DOI Listing
March 2018

Character evolution and missing (morphological) data across Asteridae.

Am J Bot 2018 03 14;105(3):470-479. Epub 2018 Apr 14.

Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611-7800, USA.

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http://dx.doi.org/10.1002/ajb2.1050DOI Listing
March 2018

Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids.

Am J Bot 2018 03 17;105(3):433-445. Epub 2018 Apr 17.

Florida Museum of Natural History, Gainesville, FL, 32611, USA.

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http://dx.doi.org/10.1002/ajb2.1059DOI Listing
March 2018

New prospects in the detection and comparative analysis of hybridization in the tree of life.

Am J Bot 2018 03 14;105(3):364-375. Epub 2018 Feb 14.

Florida Museum of Natural History, 1659 Museum Road, Gainesville, Florida, 32611, USA.

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http://dx.doi.org/10.1002/ajb2.1018DOI Listing
March 2018

Using and navigating the plant tree of life.

Am J Bot 2018 Mar 27;105(3):287-290. Epub 2018 Apr 27.

Florida Museum of Natural History, University of Florida, P. O. Box 117800, Gainesville, FL, 32611, USA.

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http://dx.doi.org/10.1002/ajb2.1071DOI Listing
March 2018

Impact of whole-genome duplication events on diversification rates in angiosperms.

Am J Bot 2018 03 2;105(3):348-363. Epub 2018 May 2.

Florida Museum of Natural History, University of Florida, Gainesville, Florida, 32611, USA.

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http://dx.doi.org/10.1002/ajb2.1060DOI Listing
March 2018

Evolutionary history of the angiosperm flora of China.

Nature 2018 02 31;554(7691):234-238. Epub 2018 Jan 31.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.

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http://www.nature.com/doifinder/10.1038/nature25485
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http://dx.doi.org/10.1038/nature25485DOI Listing
February 2018

Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome.

Mol Ecol Resour 2017 Nov 5;17(6):1243-1256. Epub 2017 Jun 5.

Department of Biology, University of Florida, Gainesville, FL, 32611-8525, USA.

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http://dx.doi.org/10.1111/1755-0998.12670DOI Listing
November 2017

Karyotypic variation and pollen stainability in resynthesized allopolyploids Tragopogon miscellus and T. mirus.

Am J Bot 2017 10;104(10):1484-1492

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, USA.

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http://dx.doi.org/10.3732/ajb.1700180DOI Listing
October 2017

Cytogeography of Callisia section Cuthbertia (Commelinaceae).

Comp Cytogenet 2017 1;11(4):553-577. Epub 2017 Sep 1.

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611-7800 U.S.A.

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http://dx.doi.org/10.3897/CompCytogen.v11i4.11984DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5672156PMC
September 2017

Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family.

New Phytol 2017 Aug;215(3):1235-1248

Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China.

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http://dx.doi.org/10.1111/nph.14683DOI Listing
August 2017

Evolutionary Conservation of ABA Signaling for Stomatal Closure.

Plant Physiol 2017 Jun 23;174(2):732-747. Epub 2017 Feb 23.

College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China (S.C., G.C., Yu.W., Q.Y., F.D., G.Z., Z.-H.C.);

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http://dx.doi.org/10.1104/pp.16.01848DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5462018PMC
June 2017

Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci.

Mol Phylogenet Evol 2017 06 10;111:98-109. Epub 2017 Mar 10.

Univ Florida, Genet Inst, Gainesville, FL 32611, USA; Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611, USA; Univ Florida, Dept Biol, Gainesville, FL 32611, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S10557903173018
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http://dx.doi.org/10.1016/j.ympev.2017.03.002DOI Listing
June 2017

Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae).

Mol Phylogenet Evol 2017 06 6;111:231-247. Epub 2017 Apr 6.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Department of Biology, University of Florida, Gainesville, FL 32611, USA; Genetics Institute, University of Florida, Gainesville, FL 32610, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2017.04.003DOI Listing
June 2017

Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae).

BMC Genomics 2017 Jun 23;18(1):475. Epub 2017 Jun 23.

Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864
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http://dx.doi.org/10.1186/s12864-017-3868-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481933PMC
June 2017

Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics.

New Phytol 2017 May 10;214(3):1355-1367. Epub 2017 Feb 10.

Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.

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http://dx.doi.org/10.1111/nph.14461DOI Listing
May 2017

Evolution of floral diversity: genomics, genes and gamma.

Philos Trans R Soc Lond B Biol Sci 2017 02;372(1713)

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA

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http://dx.doi.org/10.1098/rstb.2015.0509DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5182423PMC
February 2017

The influence of habitat on the evolution of plants: a case study across Saxifragales.

Ann Bot 2016 12 22;118(7):1317-1328. Epub 2016 Aug 22.

Department of Biology, University of Florida, Gainesville, FL 32611, USA

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http://dx.doi.org/10.1093/aob/mcw160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5155595PMC
December 2016

Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity.

Plant Divers 2016 Dec 24;38(6):264-270. Epub 2016 Dec 24.

Florida Museum of Natural History, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1016/j.pld.2016.12.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6112245PMC
December 2016

Patterns of abiotic niche shifts in allopolyploids relative to their progenitors.

New Phytol 2016 Nov 11;212(3):708-718. Epub 2016 Jul 11.

Florida Museum of Natural History, Gainesville, FL, 32611, USA.

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http://dx.doi.org/10.1111/nph.14069DOI Listing
November 2016

Polyploidy and the proteome.

Biochim Biophys Acta 2016 Aug 16;1864(8):896-907. Epub 2016 Mar 16.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Genetics Institute, University of Florida, Gainesville, FL 32608, USA; Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32610, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2016.03.010DOI Listing
August 2016

Niche divergence between diploid and autotetraploid Tolmiea.

Am J Bot 2016 08 9;103(8):1396-406. Epub 2016 Aug 9.

Department of Biology, University of Florida, Gainesville, Florida 32611 USA Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 USA Genetics Institute, University of Florida, Gainesville, Florida 32608 USA.

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http://dx.doi.org/10.3732/ajb.1600130DOI Listing
August 2016

Idiosyncratic responses of evergreen broad-leaved forest constituents in China to the late Quaternary climate changes.

Sci Rep 2016 08 18;6:31044. Epub 2016 Aug 18.

Laboratory of Subtropical Biodiversity, Jiangxi Agricultural University, Nanchang, Jiangxi, 330045, China.

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http://dx.doi.org/10.1038/srep31044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989166PMC
August 2016

Polyploidy: Pitfalls and paths to a paradigm.

Am J Bot 2016 07 27;103(7):1146-66. Epub 2016 May 27.

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 USA Genetics Institute, University of Florida, Gainesville, Florida 32608 USA

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http://dx.doi.org/10.3732/ajb.1500501DOI Listing
July 2016

A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes.

Appl Plant Sci 2016 Jun 16;4(6). Epub 2016 Jun 16.

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 USA; The Genetics Institute, University of Florida, Gainesville, Florida 32611 USA.

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http://dx.doi.org/10.3732/apps.1600024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915922PMC
June 2016

The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century.

Appl Plant Sci 2016 Jun 16;4(6). Epub 2016 Jun 16.

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 USA; The Genetics Institute, University of Florida, Gainesville, Florida 32611 USA.

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http://dx.doi.org/10.3732/apps.1600025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915923PMC
June 2016

Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era.

Genetics 2016 Apr;202(4):1255-65

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 Department of Biology, University of Florida, Gainesville, Florida 32611 Genetics Institute, University of Florida, Gainesville, Florida 32610

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http://dx.doi.org/10.1534/genetics.115.182964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905540PMC
April 2016

Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants.

Am J Bot 2016 04 7;103(4):730-9. Epub 2016 Apr 7.

Department of Biology, University of Florida, Gainesville, Florida 32611, USA Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, USA The Genetics Institute, University of Florida, Gainesville, Florida 32610, USA.

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http://doi.wiley.com/10.3732/ajb.1500260
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http://dx.doi.org/10.3732/ajb.1500260DOI Listing
April 2016

Ancient WGD events as drivers of key innovations in angiosperms.

Curr Opin Plant Biol 2016 04 8;30:159-65. Epub 2016 Apr 8.

University of Florida, Florida Museum of Natural History, USA; University of Florida, Genetics Institute, USA; Department of Biology, University of Florida, Gainesville, FL, USA.

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http://dx.doi.org/10.1016/j.pbi.2016.03.015DOI Listing
April 2016

Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution.

Mol Phylogenet Evol 2016 Mar 24;96:93-101. Epub 2015 Dec 24.

Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2015.12.006DOI Listing
March 2016

Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus.

Plant J 2016 Feb;85(3):362-77

Laboratory of Molecular Epigenetics, Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Brno, Czech Republic.

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http://dx.doi.org/10.1111/tpj.13110DOI Listing
February 2016

Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae).

Appl Plant Sci 2016 Feb 15;4(2). Epub 2016 Feb 15.

Department of Biology, University of Florida, Gainesville, Florida 32611 USA; Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 USA; UF Genetics Institute, University of Florida, Gainesville, Florida 32608 USA.

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http://doi.wiley.com/10.3732/apps.1500115
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http://dx.doi.org/10.3732/apps.1500115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4760751PMC
February 2016

The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae.

Front Plant Sci 2015 5;6:1144. Epub 2016 Jan 5.

Florida Museum of Natural History, University of FloridaGainesville, FL, USA; Genetics Institute, University of FloridaGainesville, FL, USA; Plant Molecular and Cellular Biology Graduate Program, University of FloridaGainesville, FL, USA.

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https://pdfs.semanticscholar.org/cffa/df50b3a22ff346ad287b18
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http://journal.frontiersin.org/Article/10.3389/fpls.2015.011
Publisher Site
http://dx.doi.org/10.3389/fpls.2015.01144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4700140PMC
January 2016

Floral flexibility: Diversification of the flower.

Authors:
Douglas E Soltis

Nat Plants 2016 01 6;2:15211. Epub 2016 Jan 6.

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, USA, the Department of Biology, University of Florida, Gainesville, Florida 32611, USA, and the Genetics Institute, University of Florida, Gainesville, Florida 32608, USA.

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http://dx.doi.org/10.1038/nplants.2015.211DOI Listing
January 2016

Polyploidy and genome evolution in plants.

Curr Opin Genet Dev 2015 Dec 2;35:119-25. Epub 2015 Dec 2.

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Genetics Institute, University of Florida, Gainesville, FL 32610, USA; Department of Biology, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1016/j.gde.2015.11.003DOI Listing
December 2015

Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining.

J Proteome Res 2015 Nov 8;14(11):4851-62. Epub 2015 Oct 8.

Center for Physiology and Pharmacology, Medical University of Vienna , Schwarzspanierstrasse 17, 1090 Vienna, Austria.

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http://dx.doi.org/10.1021/acs.jproteome.5b00681DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642221PMC
November 2015

Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set.

Am J Bot 2015 Nov 27;102(11):1794-813. Epub 2015 Oct 27.

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611-7800 USA.

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November 2015

Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change.

Sci Rep 2015 Sep 10;5:14023. Epub 2015 Sep 10.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.

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http://www.nature.com/articles/srep14023
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4650596PMC
September 2015

Out of the Water: Origin and Diversification of the LBD Gene Family.

Mol Biol Evol 2015 Aug 2;32(8):1996-2000. Epub 2015 Apr 2.

Department of Biology, University of Florida Florida Museum of Natural History, University of Florida.

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http://dx.doi.org/10.1093/molbev/msv080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833067PMC
August 2015

Nonadditive gene expression in polyploids.

Annu Rev Genet 2014 ;48:485-517

Department of Biology, University of Florida, Gainesville, Florida 32611-8525; email: , ,

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http://dx.doi.org/10.1146/annurev-genet-120213-092159DOI Listing
July 2015

Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata.

Am J Bot 2015 Jun 12;102(6):973-82. Epub 2015 Jun 12.

Department of Biology, University of Florida, Gainesville, Florida 32611 USA.

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June 2015

Multiple origins and chromosomal novelty in the allotetraploid Tragopogon castellanus (Asteraceae).

New Phytol 2015 May 3;206(3):1172-83. Epub 2015 Jan 3.

Florida Museum of Natural History, University of Florida, Gainesville, FL, 32611, USA.

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http://dx.doi.org/10.1111/nph.13227DOI Listing
May 2015

Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta.

Appl Plant Sci 2015 May 13;3(5). Epub 2015 May 13.

Department of Biology, University of Florida, Gainesville, Florida 32611 USA ; Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 USA ; Genetics Institute, University of Florida, Gainesville, Florida 32611 USA.

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http://dx.doi.org/10.3732/apps.1400105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4435465PMC
May 2015

Repeated range expansions and inter-/postglacial recolonization routes of Sargentodoxa cuneata (Oliv.) Rehd. et Wils. (Lardizabalaceae) in subtropical China revealed by chloroplast phylogeography.

Mol Phylogenet Evol 2015 Apr 27;85:238-46. Epub 2015 Feb 27.

Laboratory of Subtropical Biodiversity, Jiangxi Agricultural University, 330045 Nanchang, Jiangxi, China. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2015.02.016DOI Listing
April 2015

Optical sectioning and 3D reconstructions as an alternative to scanning electron microscopy for analysis of cell shape.

Appl Plant Sci 2015 Apr 3;3(4). Epub 2015 Apr 3.

Department of Biology, University of Florida, 876 Newell Drive, Gainesville, Florida 32611 USA.

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http://doi.wiley.com/10.3732/apps.1400112
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406833PMC
April 2015

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes.

Appl Plant Sci 2015 Apr 6;3(4). Epub 2015 Apr 6.

Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA ; Genetics Institute, University of Florida, Gainesville, Florida, USA.

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http://dx.doi.org/10.3732/apps.1400115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406834PMC
April 2015

Deep phylogenetic incongruence in the angiosperm clade Rosidae.

Mol Phylogenet Evol 2015 Feb 18;83:156-66. Epub 2014 Nov 18.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, China. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2014.11.003DOI Listing
February 2015

Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae.

Mol Phylogenet Evol 2015 Feb 3;83:86-98. Epub 2014 Dec 3.

Department of Biology, University of Florida, Gainesville, FL 32611, USA; Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2014.11.011DOI Listing
February 2015

DEF- and GLO-like proteins may have lost most of their interaction partners during angiosperm evolution.

Ann Bot 2014 Nov 5;114(7):1431-43. Epub 2014 Jun 5.

Department of Genetics, Friedrich Schiller University Jena, Philosophenweg 12, D-07743 Jena, Germany

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http://dx.doi.org/10.1093/aob/mcu094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4204782PMC
November 2014

Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae.

Mol Phylogenet Evol 2014 Nov 8;80:169-85. Epub 2014 Aug 8.

Department of Biodiversity Earth and Environmental Sciences, Drexel University, Philadelphia, PA 19104, USA; Department of Botany, Academy of Natural Sciences of Drexel University, 1900 Benjamin Franklin Parkway, Philadelphia, PA 19103, USA. Electronic address:

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November 2014

Polyploidy and novelty: Gottlieb's legacy.

Philos Trans R Soc Lond B Biol Sci 2014 Aug;369(1648)

Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA Department of Biology, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1098/rstb.2013.0351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071524PMC
August 2014

The legacy of diploid progenitors in allopolyploid gene expression patterns.

Philos Trans R Soc Lond B Biol Sci 2014 Aug;369(1648)

Department of Biology, Reed College, Portland, OR 97202, USA.

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http://dx.doi.org/10.1098/rstb.2013.0354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071527PMC
August 2014

Gene silencing via DNA methylation in naturally occurring Tragopogon miscellus (Asteraceae) allopolyploids.

BMC Genomics 2014 Aug 22;15:701. Epub 2014 Aug 22.

Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand.

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http://dx.doi.org/10.1186/1471-2164-15-701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148530PMC
August 2014

The polyploidy revolution then…and now: Stebbins revisited.

Am J Bot 2014 Jul 20;101(7):1057-1078. Epub 2014 Jul 20.

Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611 USA.

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http://dx.doi.org/10.3732/ajb.1400178DOI Listing
July 2014