Doron Lipson

Doron Lipson

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Doron Lipson

Doron Lipson

Publications by authors named "Doron Lipson"

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Homologous recombination in lung cancer, germline and somatic mutations, clinical and phenotype characterization.

Lung Cancer 2019 Nov 12;137:48-51. Epub 2019 Sep 12.

Sharett institute of Oncology, Hebrew University-Hadassah Medical Center, Jerusalem, 91120, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.lungcan.2019.09.008DOI Listing
November 2019

RET Fusion Lung Carcinoma: Response to Therapy and Clinical Features in a Case Series of 14 Patients.

Clin Lung Cancer 2017 07 29;18(4):e223-e232. Epub 2016 Oct 29.

Institute of Oncology, Davidoff Cancer Center, Rabin Medical Center, Petah Tikva, Israel; Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.cllc.2016.09.003DOI Listing
July 2017

Comprehensive genomic profiling of extrahepatic cholangiocarcinoma reveals a long tail of therapeutic targets.

J Clin Pathol 2016 May 23;69(5):403-8. Epub 2015 Oct 23.

Department of Pathology, Albany Medical College, Albany, New York, USA Foundation Medicine, Inc., Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1136/jclinpath-2015-203394DOI Listing
May 2016

Comprehensive Genomic Profiling of Advanced Penile Carcinoma Suggests a High Frequency of Clinically Relevant Genomic Alterations.

Oncologist 2016 Jan 15;21(1):33-9. Epub 2015 Dec 15.

Foundation Medicine, Inc., Cambridge, Massachusetts, USA; Department of Medical Oncology, City of Hope Comprehensive Cancer Center, Duarte, California, USA; Department of Microbiology and Immunobiology, Harvard Medical School, Boston, Massachusetts, USA; Department of Pathology and Laboratory Medicine, Albany Medical College, Albany, New York, USA.

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http://www.foundationmedicine.com/wp-content/uploads/2015/12
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http://theoncologist.alphamedpress.org/cgi/doi/10.1634/theon
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http://dx.doi.org/10.1634/theoncologist.2015-0241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709208PMC
January 2016

EGFR Kinase Domain Duplication (EGFR-KDD) Is a Novel Oncogenic Driver in Lung Cancer That Is Clinically Responsive to Afatinib.

Cancer Discov 2015 Nov 18;5(11):1155-63. Epub 2015 Aug 18.

Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, Tennessee. Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, Tennessee. Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee.

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http://dx.doi.org/10.1158/2159-8290.CD-15-0654DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631701PMC
November 2015

Comprehensive Genomic Profiling of Advanced Esophageal Squamous Cell Carcinomas and Esophageal Adenocarcinomas Reveals Similarities and Differences.

Oncologist 2015 Oct 2;20(10):1132-9. Epub 2015 Sep 2.

Foundation Medicine, Inc., Cambridge, Massachusetts, USA; Division of Hematology-Oncology, University of California Irvine, Orange, California, USA; The Ohio State University-James Cancer Hospital, Columbus, Ohio, USA; National Translational Research Group, New York, New York, USA; Albany Medical College, Albany, New York, USA.

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http://dx.doi.org/10.1634/theoncologist.2015-0156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4591943PMC
October 2015

Prospective comprehensive genomic profiling of advanced gastric carcinoma cases reveals frequent clinically relevant genomic alterations and new routes for targeted therapies.

Oncologist 2015 May 16;20(5):499-507. Epub 2015 Apr 16.

Foundation Medicine Inc., Cambridge, Massachusetts, USA; Chao Family Comprehensive Cancer Center, Division of Hematology-Oncology, Department of Medicine, University of California Irvine School of Medicine, Orange, California, USA; Dana-Farber Cancer Institute, Boston, Massachusetts, USA; University of Chicago, Chicago, Illinois, USA; Comprehensive Cancer Centers of Nevada, Las Vegas, Nevada, USA; Department of Pathology and Laboratory Medicine, Albany Medical College, Albany, New York, USA.

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http://dx.doi.org/10.1634/theoncologist.2014-0378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425384PMC
May 2015

Genomic profiling of advanced-stage, metaplastic breast carcinoma by next-generation sequencing reveals frequent, targetable genomic abnormalities and potential new treatment options.

Arch Pathol Lab Med 2015 May;139(5):642-9

From the Department of Pathology and Laboratory Medicine, Albany Medical College, Albany, New York (Drs Ross and Boguniewicz and Ms Sheehan); Research and Development, Foundation Medicine, Inc, Cambridge, Massachusetts (Drs Ross, Wang, Otto, Yelensky, Lipson, Ali, Morosini, Chliemlecki, Elvin, Miller, and Stephens); and the Department of Pathology, University of Indiana School of Medicine, Indianapolis (Dr Badve).

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http://dx.doi.org/10.5858/arpa.2014-0200-OADOI Listing
May 2015

Fluorescence in situ hybridization, immunohistochemistry, and next-generation sequencing for detection of EML4-ALK rearrangement in lung cancer.

Oncologist 2015 Mar 26;20(3):316-22. Epub 2015 Feb 26.

Thoracic Cancer Research and Detection Center, Sheba Medical Center, Ramat Gan, Israel; Tel Aviv University, Tel Aviv, Israel; University of Colorado Cancer Center, Division of Medical Oncology, University of Colorado, Aurora, Colorado, USA; Oncotest, Teva Pharmaceutical Industries Ltd., Petah Tikva, Israel; Thoracic Cancer Unit, Davidoff Cancer Center, Rabin Medical Center, Petah Tikva, Israel; Foundation Medicine, Cambridge, Massachusetts, USA; The Institute of Oncology, Wolfson Medical Center, Holon, Israel

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http://dx.doi.org/10.1634/theoncologist.2014-0389DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350802PMC
March 2015

Identification of recurrent FGFR3-TACC3 fusion oncogenes from lung adenocarcinoma.

Clin Cancer Res 2014 Dec 7;20(24):6551-8. Epub 2014 Oct 7.

Lowe Center for Thoracic Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts. Belfer Institute for Applied Cancer Science, Dana-Farber Cancer Institute, Boston, Massachusetts.

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http://dx.doi.org/10.1158/1078-0432.CCR-14-1337DOI Listing
December 2014

New routes to targeted therapy of intrahepatic cholangiocarcinomas revealed by next-generation sequencing.

Oncologist 2014 Mar 21;19(3):235-42. Epub 2014 Feb 21.

Department of Pathology and Laboratory Medicine, Albany Medical College, Albany, New York, USA; Foundation Medicine, Inc., Cambridge, Massachusetts, USA; University of Chicago, Chicago, Illinois, USA; The University of Texas, MD Anderson Cancer Center, Houston, Texas, USA.

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http://dx.doi.org/10.1634/theoncologist.2013-0352DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3958461PMC
March 2014

BRAF fusions define a distinct molecular subset of melanomas with potential sensitivity to MEK inhibition.

Clin Cancer Res 2013 Dec;19(24):6696-702

Authors' Affiliations: Departments of Cancer Biology, Biochemistry, Vanderbilt-Ingram Cancer Center; Departments of Pathology, Microbiology, and Immunology, Medicine, Division of Hematology-Oncology, Vanderbilt University School of Medicine; Department of Pediatrics, Vanderbilt University Medical Center, Nashville, Tennessee; Foundation Medicine, Inc., Cambridge, Massachusetts; and Department of Pathology and Laboratory Medicine, Albany Medical College, Albany, New York.

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http://clincancerres.aacrjournals.org/cgi/doi/10.1158/1078-0
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http://dx.doi.org/10.1158/1078-0432.CCR-13-1746DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3880773PMC
December 2013

Response to Cabozantinib in patients with RET fusion-positive lung adenocarcinomas.

Cancer Discov 2013 Jun 26;3(6):630-5. Epub 2013 Mar 26.

Departments of Medicine Thoracic Oncology Service, Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10065, USA.

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http://dx.doi.org/10.1158/2159-8290.CD-13-0035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160032PMC
June 2013

Protocol dependence of sequencing-based gene expression measurements.

PLoS One 2011 May 6;6(5):e19287. Epub 2011 May 6.

Applications, Methods, and Collaborations Group, Helicos BioSciences, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019287PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3089619PMC
May 2011

Error tolerant indexing and alignment of short reads with covering template families.

J Comput Biol 2010 Oct;17(10):1397-1411

Helicos BioSciences Corporation, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1089/cmb.2010.0005DOI Listing
October 2010

Quantification of the yeast transcriptome by single-molecule sequencing.

Nat Biotechnol 2009 Jul 5;27(7):652-8. Epub 2009 Jul 5.

Helicos Biosciences Corporation, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nbt.1551DOI Listing
July 2009

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

BMC Bioinformatics 2009 Feb 3;10:48. Epub 2009 Feb 3.

Molecular Cell Biology Department, Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1186/1471-2105-10-48DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2644678PMC
February 2009

Discovering motifs in ranked lists of DNA sequences.

PLoS Comput Biol 2007 Mar;3(3):e39

Computer Science Department, Technion, Haifa, Israel.

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http://dx.doi.org/10.1371/journal.pcbi.0030039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1829477PMC
March 2007

Optimization of probe coverage for high-resolution oligonucleotide aCGH.

Bioinformatics 2007 Jan;23(2):e77-83

Computer Science Department Technion, Israel.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btl316DOI Listing
January 2007

Molecular shift register and its utilization as an autonomous DNA synthesizer.

Phys Rev Lett 2006 Nov 16;97(20):208103. Epub 2006 Nov 16.

Department of Physics, Technion-Israel Institute of Technology, Haifa 32000, Israel.

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http://dx.doi.org/10.1103/PhysRevLett.97.208103DOI Listing
November 2006

Efficient calculation of interval scores for DNA copy number data analysis.

J Comput Biol 2006 Mar;13(2):215-28

Computer Science Department, Technion, Haifa, Israel.

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http://www.liebertpub.com/doi/10.1089/cmb.2006.13.215
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http://dx.doi.org/10.1089/cmb.2006.13.215DOI Listing
March 2006