Dmitry A Ovchinnikov

Dmitry A Ovchinnikov

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Dmitry A Ovchinnikov

Dmitry A Ovchinnikov

Publications by authors named "Dmitry A Ovchinnikov"

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Platypus Induced Pluripotent Stem Cells: The Unique Pluripotency Signature of a Monotreme.

Stem Cells Dev 2019 Feb 9;28(3):151-164. Epub 2019 Jan 9.

2 Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St Lucia, Australia.

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https://www.liebertpub.com/doi/10.1089/scd.2018.0179
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http://dx.doi.org/10.1089/scd.2018.0179DOI Listing
February 2019

The Impact of APP on Alzheimer-like Pathogenesis and Gene Expression in Down Syndrome iPSC-Derived Neurons.

Stem Cell Reports 2018 07 31;11(1):32-42. Epub 2018 May 31.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane, QLD 4072, Australia. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22136711183022
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http://dx.doi.org/10.1016/j.stemcr.2018.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6066957PMC
July 2018

Cortical Neurons Derived from Equine Induced Pluripotent Stem Cells Are Susceptible to Neurotropic Flavivirus Infection and Replication: An In Vitro Model for Equine Neuropathic Diseases.

Stem Cells Dev 2018 05 16;27(10):704-715. Epub 2018 Apr 16.

1 Australian Institute for Bioengineering and Nanotechnology, University of Queensland , St Lucia, Australia .

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http://dx.doi.org/10.1089/scd.2017.0106DOI Listing
May 2018

FANTOM5 CAGE profiles of human and mouse samples.

Authors:
Shuhei Noguchi Takahiro Arakawa Shiro Fukuda Masaaki Furuno Akira Hasegawa Fumi Hori Sachi Ishikawa-Kato Kaoru Kaida Ai Kaiho Mutsumi Kanamori-Katayama Tsugumi Kawashima Miki Kojima Atsutaka Kubosaki Ri-Ichiroh Manabe Mitsuyoshi Murata Sayaka Nagao-Sato Kenichi Nakazato Noriko Ninomiya Hiromi Nishiyori-Sueki Shohei Noma Eri Saijyo Akiko Saka Mizuho Sakai Christophe Simon Naoko Suzuki Michihira Tagami Shoko Watanabe Shigehiro Yoshida Peter Arner Richard A Axton Magda Babina J Kenneth Baillie Timothy C Barnett Anthony G Beckhouse Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher Ailsa J Carlisle Hans C Clevers Carrie A Davis Michael Detmar Taeko Dohi Albert S B Edge Matthias Edinger Anna Ehrlund Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Afsaneh Eslami Michela Fagiolini Lynsey Fairbairn Mary C Farach-Carson Geoffrey J Faulkner Carmelo Ferrai Malcolm E Fisher Lesley M Forrester Rie Fujita Jun-Ichi Furusawa Teunis B Geijtenbeek Thomas Gingeras Daniel Goldowitz Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Yuki Hasegawa Meenhard Herlyn Peter Heutink Kelly J Hitchens David A Hume Tomokatsu Ikawa Yuri Ishizu Chieko Kai Hiroshi Kawamoto Yuki I Kawamura Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura Sarah Klein S Peter Klinken Alan J Knox Soichi Kojima Haruhiko Koseki Shigeo Koyasu Weonju Lee Andreas Lennartsson Alan Mackay-Sim Niklas Mejhert Yosuke Mizuno Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Kelly J Morris Hozumi Motohashi Christine L Mummery Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Tadasuke Nozaki Soichi Ogishima Naganari Ohkura Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Robert Passier Margaret Patrikakis Ana Pombo Swati Pradhan-Bhatt Xian-Yang Qin Michael Rehli Patrizia Rizzu Sugata Roy Antti Sajantila Shimon Sakaguchi Hiroki Sato Hironori Satoh Suzana Savvi Alka Saxena Christian Schmidl Claudio Schneider Gundula G Schulze-Tanzil Anita Schwegmann Guojun Sheng Jay W Shin Daisuke Sugiyama Takaaki Sugiyama Kim M Summers Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Andru Tomoiu Hiroo Toyoda Marc van de Wetering Linda M van den Berg Roberto Verardo Dipti Vijayan Christine A Wells Louise N Winteringham Ernst Wolvetang Yoko Yamaguchi Masayuki Yamamoto Chiyo Yanagi-Mizuochi Misako Yoneda Yohei Yonekura Peter G Zhang Silvia Zucchelli Imad Abugessaisa Erik Arner Jayson Harshbarger Atsushi Kondo Timo Lassmann Marina Lizio Serkan Sahin Thierry Sengstag Jessica Severin Hisashi Shimoji Masanori Suzuki Harukazu Suzuki Jun Kawai Naoto Kondo Masayoshi Itoh Carsten O Daub Takeya Kasukawa Hideya Kawaji Piero Carninci Alistair R R Forrest Yoshihide Hayashizaki

Sci Data 2017 08 29;4:170112. Epub 2017 Aug 29.

RIKEN Omics Science Center, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1038/sdata.2017.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5574368PMC
August 2017

Generation of Footprint-Free Induced Pluripotent Stem Cells from Human Fibroblasts Using Episomal Plasmid Vectors.

Methods Mol Biol 2015 ;1330:37-45

Stem Cell Engineering Group, Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Corner College and Cooper Rds (Building 75), St. Lucia, Brisbane, QLD, 4072, Australia.

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http://dx.doi.org/10.1007/978-1-4939-2848-4_4DOI Listing
September 2016

Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers.

BMC Cancer 2016 Sep 23;16(1):749. Epub 2016 Sep 23.

The School of Biomedical Sciences, Institute of Health and Biomedical Innovation, Queensland University of Technology, GPO Box 2434, 60 Musk Avenue, Kelvin Grove, Brisbane, QLD, 4059, Australia.

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http://dx.doi.org/10.1186/s12885-016-2785-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5034533PMC
September 2016

Polymeric nanofibrous substrates stimulate pluripotent stem cells to form three-dimensional multilayered patty-like spheroids in feeder-free culture and maintain their pluripotency.

J Tissue Eng Regen Med 2015 Sep 25;9(9):1078-83. Epub 2014 Nov 25.

Clem Jones Research Centre for Stem Cells and Tissue Regenerative Therapies, Bond University, Gold Coast, Queensland, Australia.

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http://dx.doi.org/10.1002/term.1960DOI Listing
September 2015

Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development.

PLoS Genet 2015 Aug 19;11(8):e1005428. Epub 2015 Aug 19.

Department of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4546122PMC
August 2015

TRAF2 recruitment via T61 in CD30 drives NFκB activation and enhances hESC survival and proliferation.

Mol Biol Cell 2015 Mar 7;26(5):993-1006. Epub 2015 Jan 7.

Stem Cell Engineering Group, Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St. Lucia, QLD 4072, Australia.

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http://dx.doi.org/10.1091/mbc.E14-08-1290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4342033PMC
March 2015

Isolation of contractile cardiomyocytes from human pluripotent stem-cell-derived cardiomyogenic cultures using a human NCX1-EGFP reporter.

Stem Cells Dev 2015 Jan;24(1):11-20

1 Stem Cell Engineering Group, Australian Institute for Bioengineering and Nanotechnology, The University of Queensland , St. Lucia, Australia .

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http://dx.doi.org/10.1089/scd.2014.0195DOI Listing
January 2015

Opportunities and Limitations of Modelling Alzheimer's Disease with Induced Pluripotent Stem Cells.

J Clin Med 2014 Dec 5;3(4):1357-72. Epub 2014 Dec 5.

Stem Cell Engineering Group, Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St. Lucia 4072, Australia.

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http://dx.doi.org/10.3390/jcm3041357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4470188PMC
December 2014

Transgenic human ES and iPS reporter cell lines for identification and selection of pluripotent stem cells in vitro.

Stem Cell Res 2014 Sep 8;13(2):251-61. Epub 2014 Jun 8.

Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, QLD 4072, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.scr.2014.05.006DOI Listing
September 2014

Generation and characterization of leukemia inhibitory factor-dependent equine induced pluripotent stem cells from adult dermal fibroblasts.

Stem Cells Dev 2014 Jul 1;23(13):1515-23. Epub 2014 Apr 1.

1 School of Veterinary Science, University of Queensland , Gatton, Queensland, Australia .

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http://dx.doi.org/10.1089/scd.2013.0461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066230PMC
July 2014

DNA Methylation at the Novel CpG Sites in the Promoter of MED15/PCQAP Gene as a Biomarker for Head and Neck Cancers.

Biomark Insights 2014 3;9:53-60. Epub 2014 Jul 3.

The Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Old Coopers Road, St Lucia, Queensland, Australia. ; University of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Princess Alexandra Hospital, Woolloongabba, Brisbane, Australia.

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http://dx.doi.org/10.4137/BMI.S16199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085102PMC
July 2014

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

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http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Full factorial screening of human embryonic stem cell maintenance with multiplexed microbioreactor arrays.

Biotechnol J 2013 Jul;8(7):822-34

Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St. Lucia, QLD, Australia.

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http://dx.doi.org/10.1002/biot.201200375DOI Listing
July 2013

Concise review: new paradigms for Down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease.

Stem Cells Transl Med 2013 Mar 14;2(3):175-84. Epub 2013 Feb 14.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St Lucia, Queensland, Australia.

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http://dx.doi.org/10.5966/sctm.2012-0117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3659762PMC
March 2013

Tumor-suppressor Gene Promoter Hypermethylation in Saliva of Head and Neck Cancer Patients.

Transl Oncol 2012 Oct 1;5(5):321-6. Epub 2012 Oct 1.

Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3468923PMC
http://dx.doi.org/10.1593/tlo.12232DOI Listing
October 2012

Generation and characterization of LIF-dependent canine induced pluripotent stem cells from adult dermal fibroblasts.

Stem Cells Dev 2012 Aug 15;21(12):2288-97. Epub 2012 Feb 15.

School of Veterinary Science, University of Queensland, Gatton, Queensland, Australia.

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http://dx.doi.org/10.1089/scd.2011.0608DOI Listing
August 2012

Generation of a human embryonic stem cell line stably expressing high levels of the fluorescent protein mCherry.

World J Stem Cells 2012 Jul;4(7):71-9

Dmitry A Ovchinnikov, Nilay Y Thakar, Ernst J Wolvetang, Stem Cell Engineering Group, Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane 4072, Queensland, Australia.

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http://dx.doi.org/10.4252/wjsc.v4.i7.71DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3443714PMC
July 2012

Macrophages in the embryo and beyond: much more than just giant phagocytes.

Genesis 2008 Sep;46(9):447-62

Institute for Molecular Bioscience and Cooperative Research Centre for Chronic Inflammatory Diseases, University of Queensland, Brisbane, Queensland, Australia.

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http://doi.wiley.com/10.1002/dvg.20417
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http://dx.doi.org/10.1002/dvg.20417DOI Listing
September 2008

Characterisation and trophic functions of murine embryonic macrophages based upon the use of a Csf1r-EGFP transgene reporter.

Dev Biol 2007 Aug 25;308(1):232-46. Epub 2007 May 25.

Institute for Molecular Bioscience and ARC Special Research Centre for Functional and Applied Genomics, University of Queensland, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1016/j.ydbio.2007.05.027DOI Listing
August 2007

BMP receptor type IA in limb bud mesenchyme regulates distal outgrowth and patterning.

Dev Biol 2006 Jul 21;295(1):103-15. Epub 2006 Apr 21.

Department of Molecular Genetics, University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX 77030, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S001216060600201
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http://dx.doi.org/10.1016/j.ydbio.2006.03.013DOI Listing
July 2006

Bmpr1a and Bmpr1b have overlapping functions and are essential for chondrogenesis in vivo.

Proc Natl Acad Sci U S A 2005 Apr 21;102(14):5062-7. Epub 2005 Mar 21.

Department of Molecular, Cell, and Developmental Biology, University of California, Los Angeles, CA 90095, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0500031102
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http://dx.doi.org/10.1073/pnas.0500031102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC555995PMC
April 2005

Progression of HCC in mice is associated with a downregulation in the expression of hepatocyte nuclear factors.

Hepatology 2004 Apr;39(4):1038-47

Laboratory of Immunochemistry, Institute of Carcinogenesis, N.N. Blokhin Cancer Research Center, Moscow, Russia.

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http://dx.doi.org/10.1002/hep.20155DOI Listing
April 2004