Publications by authors named "Dirk Wagner"

100Publications

Environmental patterns of brown moss- and Sphagnum-associated microbial communities.

Sci Rep 2020 12 29;10(1):22412. Epub 2020 Dec 29.

GFZ German Research Center for Geosciences, Section Geomicrobiology, Potsdam, Germany.

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December 2020

COVID-19 in-hospital mortality and mode of death in a dynamic and non-restricted tertiary care model in Germany.

PLoS One 2020 12;15(11):e0242127. Epub 2020 Nov 12.

Department of Medicine III (Interdisciplinary Medical Intensive Care), Medical Center-University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.

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November 2020

Epidemiology of nontuberculous mycobacterial pulmonary disease in Europe and Japan by Delphi estimation.

Respir Med 2020 11 21;173:106164. Epub 2020 Sep 21.

Radboud Center for Infectious Diseases, Department of Medical Microbiology, Radboud University Medical Center, Nijmegen, the Netherlands. Electronic address:

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November 2020

COVID-19 in a Severely Immunosuppressed Patient With Life-Threatening Eosinophilic Granulomatosis With Polyangiitis.

Front Immunol 2020 28;11:2086. Epub 2020 Aug 28.

Department of Rheumatology and Clinical Immunology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.

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October 2020

[Nontuberculous mycobacterial pulmonary disease - The new ATS/ERS/ESCMID/IDSA Guideline].

Dtsch Med Wochenschr 2020 Aug 13;145(16):1145-1151. Epub 2020 Aug 13.

Medizinische Klinik, Forschungszentrum Borstel, Leibniz Lungenzentrum.

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August 2020

Discovery and Characterization of a New Cold-Active Protease From an Extremophilic Bacterium via Comparative Genome Analysis and Expression.

Front Microbiol 2020 13;11:881. Epub 2020 May 13.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section Geomicrobiology, Potsdam, Germany.

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May 2020

Prolonged SARS-CoV-2 shedding and mild course of COVID-19 in a patient after recent heart transplantation.

Am J Transplant 2020 11 4;20(11):3239-3245. Epub 2020 Jul 4.

Department of Cardiology and Angiology I, Heart Center Freiburg University, Faculty of Medicine, University of Freiburg, Freiburg, Germany.

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November 2020

[COVID-19 associated pneumonia despite repeatedly negative PCR-analysis from oropharyngeal swabs].

Dtsch Med Wochenschr 2020 06 13;145(12):844-849. Epub 2020 May 13.

Klinik für Innere Medizin II, Gastroenterologie, Hepatologie, Endokrinologie und Infektiologie, Universitätsklinikum Freiburg.

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June 2020

Methanogenic response to long-term permafrost thaw is determined by paleoenvironment.

FEMS Microbiol Ecol 2020 03;96(3)

GFZ German Research Centre for Geosciences, Section Geomicrobiology, Telegrafenberg, 14473 Potsdam, Germany.

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March 2020

Methanogenic Archaea Can Produce Methane in Deliquescence-Driven Mars Analog Environments.

Sci Rep 2020 01 8;10(1). Epub 2020 Jan 8.

Zentrum für Astronomie und Astrophysik (ZAA), AG Astrobiologie, Technische Universität Berlin, Hardenbergstr. 36, 10623, Berlin, Germany.

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January 2020

A chemical and microbial characterization of selected mud volcanoes in Trinidad reveals pathogens introduced by surface water and rain water.

Sci Total Environ 2020 Mar 13;707:136087. Epub 2019 Dec 13.

GFZ German Research Centre for Geosciences, Section Geomicrobiology, 14473 Potsdam, Germany; University of Potsdam, Institute of Geosciences, 14476 Potsdam, Germany.

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March 2020

Response of Methanogenic Archaea from Siberian Permafrost and Non-permafrost Environments to Simulated Mars-like Desiccation and the Presence of Perchlorate.

Astrobiology 2019 02;19(2):197-208

1 GFZ, German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section Geomicrobiology, Potsdam, Germany.

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February 2019

Desiccation- and Saline-Tolerant Bacteria and Archaea in Kalahari Pan Sediments.

Front Microbiol 2018 20;9:2082. Epub 2018 Sep 20.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, Potsdam, Germany.

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September 2018

Metabolic potential of microbial communities from ferruginous sediments.

Environ Microbiol 2018 12 16;20(12):4297-4313. Epub 2018 Oct 16.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3: Geomicrobiology, Potsdam, Germany.

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December 2018

Author Correction: Effect of varying soil water potentials on methanogenesis in aerated marshland soils.

Authors:
Dirk Wagner

Sci Rep 2018 May 9;8(1):7523. Epub 2018 May 9.

GFZ German Research Centre for Geosciences, Section 5.3 Geomicrobiology, Telegrafenberg, 14473, Potsdam, Germany.

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May 2018

Answer to February 2018 Photo Quiz.

J Clin Microbiol 2018 02 24;56(2). Epub 2018 Jan 24.

Division of Infectious Diseases, Department of Medicine II, Medical Center-University of Freiburg, Freiburg, Germany

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February 2018

Photo Quiz: Pneumonia and Pyogenic Skin Abscesses in a 79-Year-Old Man.

J Clin Microbiol 2018 02 24;56(2). Epub 2018 Jan 24.

Division of Infectious Diseases, Department of Medicine II, Medical Center-University of Freiburg, Freiburg, Germany

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February 2018

Anaerobic methanotrophic communities thrive in deep submarine permafrost.

Sci Rep 2018 01 22;8(1):1291. Epub 2018 Jan 22.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, 14473, Potsdam, Germany.

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January 2018

Microbiological and Geochemical Survey of CO-Dominated Mofette and Mineral Waters of the Cheb Basin, Czech Republic.

Front Microbiol 2017 11;8:2446. Epub 2017 Dec 11.

GFZ German Research Centre for Geosciences, Section 5.3 Geomicrobiology, Potsdam, Germany.

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December 2017

Effect of varying soil water potentials on methanogenesis in aerated marshland soils.

Authors:
Dirk Wagner

Sci Rep 2017 10 31;7(1):14706. Epub 2017 Oct 31.

GFZ German Research Centre for Geosciences, Section 5.3 Geomicrobiology, Telegrafenberg, 14473, Potsdam, Germany.

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October 2017

Community structure of rare methanogenic archaea: insight from a single functional group.

FEMS Microbiol Ecol 2017 11;93(11)

GFZ German Research Center for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, 14473 Potsdam, Germany.

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November 2017

Preservation and Significance of Extracellular DNA in Ferruginous Sediments from Lake Towuti, Indonesia.

Front Microbiol 2017 27;8:1440. Epub 2017 Jul 27.

GFZ German Research Centre for Geosciences, Section 5.3: GeomicrobiologyPotsdam, Germany.

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July 2017

Global Biogeographic Analysis of Methanogenic Archaea Identifies Community-Shaping Environmental Factors of Natural Environments.

Front Microbiol 2017 18;8:1339. Epub 2017 Jul 18.

Section 5.3 Geomicrobiology, GFZ German Research Centre for GeosciencesPotsdam, Germany.

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July 2017

Cell Membrane Fatty Acid Composition of PB4, Isolated from Antarctic Glacier Forefield Soils, in Response to Changing Temperature and pH Conditions.

Front Microbiol 2017 19;8:677. Epub 2017 Apr 19.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 3.2 Organic GeochemistryPotsdam, Germany.

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April 2017

Editorial: Polar and Alpine Microbiology-Earth's cryobiosphere.

FEMS Microbiol Ecol 2017 01;93(1)

Institute of Botany of the CAS, University of South Bohemia in Ceské Budejovice, 37982 Trebon, Czech Republic.

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January 2017

Geomicrobiological Features of Ferruginous Sediments from Lake Towuti, Indonesia.

Front Microbiol 2016 30;7:1007. Epub 2016 Jun 30.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, Potsdam Germany.

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July 2016

Methane turnover and methanotrophic communities in arctic aquatic ecosystems of the Lena Delta, Northeast Siberia.

FEMS Microbiol Ecol 2016 08 25;92(8). Epub 2016 May 25.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 5.3 Geomicrobiology, Telegrafenberg, 14473 Potsdam, Germany

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August 2016

Propidium monoazide treatment to distinguish between live and dead methanogens in pure cultures and environmental samples.

J Microbiol Methods 2016 Feb 4;121:11-23. Epub 2015 Dec 4.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section Geomicrobiology, Telegrafenberg, 14473 Potsdam, Germany. Electronic address:

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February 2016

Enhanced Radiation Resistance of Methanosarcina soligelidi SMA-21, a New Methanogenic Archaeon Isolated from a Siberian Permafrost-Affected Soil in Direct Comparison to Methanosarcina barkeri.

Astrobiology 2015 Nov 6;15(11):951-60. Epub 2015 Nov 6.

1 GFZ German Research Centre for Geosciences , Helmholtz Centre Potsdam, Section Geomicrobiology, Telegrafenberg, Potsdam, Germany .

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November 2015

Confocal Raman microspectroscopy reveals a convergence of the chemical composition in methanogenic archaea from a Siberian permafrost-affected soil.

FEMS Microbiol Ecol 2015 Dec 22;91(12). Epub 2015 Oct 22.

GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section Geomicrobiology, Telegrafenberg, 14473 Potsdam, Germany

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December 2015

[Imported histoplasmosis].

Dtsch Med Wochenschr 2015 Jun 12;140(12):913-6. Epub 2015 Jun 12.

Abteilung Infektiologie, Klinik für Innere Medizin II, Universitätsklinikum Freiburg.

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June 2015

Shifts in methanogenic community composition and methane fluxes along the degradation of discontinuous permafrost.

Front Microbiol 2015 12;6:356. Epub 2015 May 12.

Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø Norway.

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June 2015

Genome Sequence of Methanosarcina soligelidi SMA-21, Isolated from Siberian Permafrost-Affected Soil.

Genome Announc 2015 Apr 23;3(2). Epub 2015 Apr 23.

GFZ German Research Centre for Geosciences, Section 4.5 Geomicrobiology, Potsdam, Germany.

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April 2015

Influence of Martian regolith analogs on the activity and growth of methanogenic archaea, with special regard to long-term desiccation.

Front Microbiol 2015 20;6:210. Epub 2015 Mar 20.

GFZ German Research Centre for Geosciences, Section 4.5 Geomicrobiology, Potsdam Germany.

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April 2015

Non-tuberculous mycobacteria in children: muddying the waters of tuberculosis diagnosis.

Lancet Respir Med 2015 Mar 9;3(3):244-56. Epub 2015 Mar 9.

Vaccinology Theme, MRC Unit, The Gambia; Department of Paediatrics, Imperial College London, UK. Electronic address:

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March 2015

Diagnostic accuracy of computer-aided detection of pulmonary tuberculosis in chest radiographs: a validation study from sub-Saharan Africa.

PLoS One 2014 5;9(9):e106381. Epub 2014 Sep 5.

Swiss Tropical and Public Health Institute, Basel, Switzerland; Ifakara Health Institute, Bagamoyo, United Republic of Tanzania; University of Basel, Basel, Switzerland.

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March 2016

Methanosarcina spelaei sp. nov., a methanogenic archaeon isolated from a floating biofilm of a subsurface sulphurous lake.

Int J Syst Evol Microbiol 2014 Oct 22;64(Pt 10):3478-3484. Epub 2014 Jul 22.

GFZ German Research Center for Geosciences, Section 4.5 Geomicrobiology, Telegrafenberg, Potsdam, Germany.

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October 2014

Taxonomic database and cut-off value for processing mcrA gene 454 pyrosequencing data by MOTHUR.

J Microbiol Methods 2014 Aug 21;103:3-5. Epub 2014 May 21.

GFZ German Research Centre for Geosciences, Section 4.5: Geomicrobiology, Telegrafenberg, 14473 Potsdam, Germany.

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August 2014

Bacterial community composition and diversity of five different permafrost-affected soils of Northeast Greenland.

FEMS Microbiol Ecol 2014 Aug 9;89(2):426-41. Epub 2014 Jun 9.

Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Potsdam, Germany.

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August 2014

Microbial functional potential and community composition in permafrost-affected soils of the NW Canadian Arctic.

PLoS One 2014 8;9(1):e84761. Epub 2014 Jan 8.

GFZ German Center for Geosciences, Section 4.5 Geomicrobiology, Potsdam, Germany.

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September 2014

Mycobacterium genavense specific mesenteritic syndrome in HIV-infected patients: a new entity of retractile mesenteritis?

AIDS 2013 Nov;27(17):2819-22

aOrtenauklinikum Offenburg-Gengenbach, Klinik für Gastroenterologie, Hepatologie und Infektiologie, Ebertplatz, Offenburg bDepartment of Medicine, Albert-Ludwigs-University Center for Infectious Diseases and Travel Medicine, and IFB-Center for Chronic Immunodeficiency, University Hospital, HugstetterStrasse, Freiburg i.Br cOrtenauklinikum Achern, Medizinische Klinik/Infektiologie, Josef-Wurzler-Straße, Achern, Germany.

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November 2013

Methanobacterium movilense sp. nov., a hydrogenotrophic, secondary-alcohol-utilizing methanogen from the anoxic sediment of a subsurface lake.

Int J Syst Evol Microbiol 2014 Feb 9;64(Pt 2):522-527. Epub 2013 Oct 9.

GFZ German Research Center for Geosciences, Section 4.5 Geomicrobiology, Telegrafenberg, Potsdam, Germany.

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February 2014

Bacterial succession in Antarctic soils of two glacier forefields on Larsemann Hills, East Antarctica.

FEMS Microbiol Ecol 2013 Jul 5;85(1):128-42. Epub 2013 Apr 5.

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Potsdam, Germany.

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July 2013

Herbaspirillum psychrotolerans sp. nov., a member of the family Oxalobacteraceae from a glacier forefield.

Int J Syst Evol Microbiol 2013 Sep 1;63(Pt 9):3197-3203. Epub 2013 Mar 1.

Helmholtz Centre Potsdam, GFZ German Research Centre for Geosciences, Section 4.5 Geomicrobiology, Potsdam, Germany.

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September 2013

Methanosarcina soligelidi sp. nov., a desiccation- and freeze-thaw-resistant methanogenic archaeon from a Siberian permafrost-affected soil.

Int J Syst Evol Microbiol 2013 Aug 1;63(Pt 8):2986-2991. Epub 2013 Feb 1.

Helmholtz Centre Potsdam, German Research Centre for Geosciences (GFZ), Section 4.3 Organic Geochemistry, Telegrafenberg, 14473 Potsdam, Germany.

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August 2013

Chryseobacterium frigidisoli sp. nov., a psychrotolerant species of the family Flavobacteriaceae isolated from sandy permafrost from a glacier forefield.

Int J Syst Evol Microbiol 2013 Jul 4;63(Pt 7):2666-2671. Epub 2013 Jan 4.

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Germany.

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July 2013

Methane-cycling communities in a permafrost-affected soil on Herschel Island, Western Canadian Arctic: active layer profiling of mcrA and pmoA genes.

FEMS Microbiol Ecol 2012 Nov 8;82(2):287-302. Epub 2012 Mar 8.

Alfred Wegener Institute for Polar and Marine Research, Research Unit Potsdam, Potsdam, Germany.

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November 2012

Fatal hemophagocytic syndrome in a patient with a previously well-controlled asymptomatic HIV infection after EBV reactivation.

J Infect 2012 Jan 23;64(1):110-2. Epub 2011 Aug 23.

Centre of Chronic Immunodeficiency, University Hospital Freiburg, Hugstetter Strasse 55, 79106 Freiburg, Germany.

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January 2012

The impact of different soil parameters on the community structure of dominant bacteria from nine different soils located on Livingston Island, South Shetland Archipelago, Antarctica.

FEMS Microbiol Ecol 2011 Jun 18;76(3):476-91. Epub 2011 Mar 18.

Alfred Wegener Institute for Polar and Marine Research, Research Unit Potsdam, Potsdam, Germany.

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June 2011

Leifsonia psychrotolerans sp. nov., a psychrotolerant species of the family Microbacteriaceae from Livingston Island, Antarctica.

Int J Syst Evol Microbiol 2011 Aug 10;61(Pt 8):1938-1943. Epub 2010 Sep 10.

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Telegrafenberg A45, 14473 Potsdam, Germany.

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August 2011

Cryobacterium arcticum sp. nov., a psychrotolerant bacterium from an Arctic soil.

Int J Syst Evol Microbiol 2011 Aug 3;61(Pt 8):1849-1853. Epub 2010 Sep 3.

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Telegrafenberg A45, 14473 Potsdam, Germany.

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August 2011

Arthrobacter livingstonensis sp. nov. and Arthrobacter cryotolerans sp. nov., salt-tolerant and psychrotolerant species from Antarctic soil.

Int J Syst Evol Microbiol 2011 Apr 28;61(Pt 4):979-984. Epub 2010 May 28.

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Telegrafenberg A45, 14473 Potsdam, Germany.

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April 2011

Virulence-related Mycobacterium avium subsp hominissuis MAV_2928 gene is associated with vacuole remodeling in macrophages.

BMC Microbiol 2010 Apr 1;10:100. Epub 2010 Apr 1.

Department of Biomedical Sciences, College of Veterinary Medicine, Oregon State University, Corvallis, OR 97331, USA.

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April 2010

Differential activity of innate defense antimicrobial peptides against Nocardia species.

BMC Microbiol 2010 Feb 23;10:61. Epub 2010 Feb 23.

Center for Infectious Diseases & Travel Medicine, University Medical Center, Hugstetter Strasse 55, 79106 Freiburg, Germany.

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February 2010

Identification of virulence determinants of Mycobacterium avium that impact on the ability to resist host killing mechanisms.

J Med Microbiol 2010 Jan;59(Pt 1):8-16

Department of Microbiology, College of Science, Oregon State University, Corvallis, OR, USA.

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January 2010

Mortality of S. aureus bacteremia and infectious diseases specialist consultation--a study of 521 patients in Germany.

J Infect 2009 Oct 3;59(4):232-9. Epub 2009 Aug 3.

Department of Medicine, Center for Infectious Diseases and Travel Medicine, University Medical Center Freiburg, Hugstetter Str. 55, 79106 Freiburg, Germany.

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October 2009

Methanogenic community composition and anaerobic carbon turnover in submarine permafrost sediments of the Siberian Laptev Sea.

Environ Microbiol 2009 Mar;11(3):657-68

Research Department Potsdam, Alfred Wegener Institute for Polar and Marine Research, Potsdam, Germany.

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March 2009

Bacterial community structure and carbon turnover in permafrost-affected soils of the Lena Delta, northeastern Siberia.

Can J Microbiol 2009 Jan;55(1):73-83

Alfred Wegener Institute for Polar and Marine Research, Research Unit Potsdam, Telegrafenberg A45, 14473 Potsdam, Germany.

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January 2009

Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia.

Int Microbiol 2008 Sep;11(3):195-202

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Potsdam, Germany.

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September 2008

Diversity of aerobic methanotrophic bacteria in a permafrost active layer soil of the Lena Delta, Siberia.

Microb Ecol 2009 Jan 1;57(1):25-35. Epub 2008 Jul 1.

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Telegrafenberg A43, 14473, Potsdam, Germany.

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January 2009

Relapses vs. reactions in multibacillary leprosy: proposal of new relapse criteria.

Trop Med Int Health 2008 Mar;13(3):295-309

Centre for Infectious Diseases and Travel Medicine, University of Freiburg, Freiburg, Germany.

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March 2008

Thioridazine and chlorpromazine inhibition of ethidium bromide efflux in Mycobacterium avium and Mycobacterium smegmatis.

J Antimicrob Chemother 2008 May 29;61(5):1076-82. Epub 2008 Feb 29.

Unit of Mycobacteriology, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Rua da Junqueira 96, 1349-008 Lisboa, Portugal.

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May 2008

Stress response of methanogenic archaea from Siberian permafrost compared with methanogens from nonpermafrost habitats.

FEMS Microbiol Ecol 2007 Jul 11;61(1):16-25. Epub 2007 Apr 11.

Alfred Wegener Institute for Polar and Marine Research, Potsdam, Germany.

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July 2007

Abundance, distribution and potential activity of methane oxidizing bacteria in permafrost soils from the Lena Delta, Siberia.

Environ Microbiol 2007 Jan;9(1):107-17

Alfred Wegener Institute for Polar and Marine Research, Research Department Potsdam, Telegrafenberg A43, 14473 Potsdam, Germany.

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January 2007