Publications by authors named "Dirk Valkenborg"

79Publications

PRiSM: a prototype for exhaustive, restriction-free database searching for mass spectrometry-based identification.

Rapid Commun Mass Spectrom 2020 Oct 2:e8962. Epub 2020 Oct 2.

Flemish Institute for Technological Research (VITO), Boeretang 200, B-2400, Mol, Belgium.

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http://dx.doi.org/10.1002/rcm.8962DOI Listing
October 2020

Masserstein: linear regression of mass spectra by optimal transport.

Rapid Commun Mass Spectrom 2020 Sep 30. Epub 2020 Sep 30.

Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.

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http://dx.doi.org/10.1002/rcm.8956DOI Listing
September 2020

A "Refined Hydrogen Rule" and a "Refined Hydrogen and Halogen Rule" for Organic Molecules.

J Am Soc Mass Spectrom 2020 Jan 21;31(1):132-136. Epub 2019 Nov 21.

I-BioStat, Data Science Institute, Hasselt University, Hasselt, Belgium.

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http://dx.doi.org/10.1021/jasms.9b00064DOI Listing
January 2020

Deciphering the Morphology of Motor Evoked Potentials.

Front Neuroinform 2020 14;14:28. Epub 2020 Jul 14.

I-Biostat, Data Science Institute, Hasselt University, Diepenbeek, Belgium.

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http://dx.doi.org/10.3389/fninf.2020.00028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7381179PMC
July 2020

IsoSpec2: Ultrafast Fine Structure Calculator.

Anal Chem 2020 07 24;92(14):9472-9475. Epub 2020 Jun 24.

Department of Mathematics, Informatics, and Mechanics, University of Warsaw, 02-097 Warsaw, Poland.

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http://dx.doi.org/10.1021/acs.analchem.0c00959DOI Listing
July 2020

Starch biosynthesis contributes to the maintenance of photosynthesis and leaf growth under drought stress in maize.

Plant Cell Environ 2020 Jun 3. Epub 2020 Jun 3.

Research group for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Antwerp, Belgium.

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http://dx.doi.org/10.1111/pce.13813DOI Listing
June 2020

The (generalized) hydrogen rule for organic molecules.

J Mass Spectrom 2020 Mar 27;55(3):e4485. Epub 2019 Dec 27.

I-BioStat, Data Science Institute, Hasselt University, Hasselt, Belgium.

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http://dx.doi.org/10.1002/jms.4485DOI Listing
March 2020

Visualizing the agreement of peptide assignments between different search engines.

J Mass Spectrom 2020 Aug 3;55(8):e4471. Epub 2019 Dec 3.

Interuniversity Institute of Biostatistics and Statistical Bioinformatics, Hasselt University, Hasselt, Belgium.

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http://dx.doi.org/10.1002/jms.4471DOI Listing
August 2020

MIND: A Double-Linear Model To Accurately Determine Monoisotopic Precursor Mass in High-Resolution Top-Down Proteomics.

Anal Chem 2019 08 23;91(15):10310-10319. Epub 2019 Jul 23.

UA-VITO Center for Proteomics , University of Antwerp , 2000 Antwerp , Belgium.

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http://dx.doi.org/10.1021/acs.analchem.9b02682DOI Listing
August 2019

De novo prediction of the elemental composition of peptides and proteins based on a single mass.

J Mass Spectrom 2020 Aug 13;55(8):e4367. Epub 2019 Aug 13.

I-BioStat, Hasselt University, Hasselt, Belgium.

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http://dx.doi.org/10.1002/jms.4367DOI Listing
August 2020

Experimental Design in Quantitative Proteomics.

Methods Mol Biol 2019 ;1977:181-197

I-BioStat, Hasselt University, Diepenbeek, Belgium.

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http://dx.doi.org/10.1007/978-1-4939-9232-4_12DOI Listing
August 2019

QCQuan: A Web Tool for the Automated Assessment of Protein Expression and Data Quality of Labeled Mass Spectrometry Experiments.

J Proteome Res 2019 05 11;18(5):2221-2227. Epub 2019 Apr 11.

VITO NV , Applied Bio & molecular Systems , Boeretang 200 , Mol 2400 , Belgium.

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http://dx.doi.org/10.1021/acs.jproteome.9b00072DOI Listing
May 2019

masstodon: A Tool for Assigning Peaks and Modeling Electron Transfer Reactions in Top-Down Mass Spectrometry.

Anal Chem 2019 02 28;91(3):1801-1807. Epub 2019 Jan 28.

Department of Mathematics, Informatics, and Mechanics , University of Warsaw , Warsaw 02-097 , Poland.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b01479
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http://dx.doi.org/10.1021/acs.analchem.8b01479DOI Listing
February 2019

The challenges of peptidomics in complementing proteomics in a clinical context.

Mass Spectrom Rev 2019 05 29;38(3):253-264. Epub 2018 Oct 29.

Flemish Institute for Technological Research (VITO), Mol, Belgium.

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http://doi.wiley.com/10.1002/mas.21581
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http://dx.doi.org/10.1002/mas.21581DOI Listing
May 2019

Proceedings of the EuBIC developer's meeting 2018.

J Proteomics 2018 09 2;187:25-27. Epub 2018 Jun 2.

Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium; Department of Genome Sciences, University of Washington, Seattle, WA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2018.05.015DOI Listing
September 2018

Quantitative Peptidomics with Isotopic and Isobaric Tags.

Methods Mol Biol 2018 ;1719:141-159

Research Group of Functional Genomics and Proteomics, Department of Biology, KU Leuven, Leuven, Belgium.

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http://dx.doi.org/10.1007/978-1-4939-7537-2_9DOI Listing
January 2019

Radical solutions: Principles and application of electron-based dissociation in mass spectrometry-based analysis of protein structure.

Mass Spectrom Rev 2018 11 9;37(6):750-771. Epub 2018 Feb 9.

Biomolecular and Analytical Mass Spectrometry Group, Department of Chemistry, University of Antwerp, Antwerp, Belgium.

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http://dx.doi.org/10.1002/mas.21560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6131092PMC
November 2018

A tutorial in small molecule identification via electrospray ionization-mass spectrometry: The practical art of structural elucidation.

Mass Spectrom Rev 2018 09 9;37(5):607-629. Epub 2017 Nov 9.

Pharmacokinetics, Dynamics & Metabolism, Janssen Research & Development, Beerse, Belgium.

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http://dx.doi.org/10.1002/mas.21551DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099382PMC
September 2018

Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry.

J Comput Biol 2018 03 25;25(3):282-301. Epub 2017 Sep 25.

1 Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw , Warsaw, Poland .

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http://dx.doi.org/10.1089/cmb.2017.0156DOI Listing
March 2018

InSourcerer: a high-throughput method to search for unknown metabolite modifications by mass spectrometry.

Rapid Commun Mass Spectrom 2017 Sep;31(17):1396-1404

Department of Mathematics and Computer Science, University of Antwerp, Antwerpen, Belgium.

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http://dx.doi.org/10.1002/rcm.7910DOI Listing
September 2017

IsoSpec: Hyperfast Fine Structure Calculator.

Anal Chem 2017 03 8;89(6):3272-3277. Epub 2017 Mar 8.

Department of Mathematics, Informatics, and Mechanics, University of Warsaw , 02-097 Warsaw, Poland.

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http://dx.doi.org/10.1021/acs.analchem.6b01459DOI Listing
March 2017

MS imaging and mass spectrometric synaptosome profiling identify PEP-19/pcp4 as a synaptic molecule involved in spatial learning in mice.

Biochim Biophys Acta Proteins Proteom 2017 Jul 26;1865(7):936-945. Epub 2016 Oct 26.

KU Leuven, Department of Biology, Laboratory of Neuroplasticity and Neuroproteomics, Naamsestraat 59, 3000 Leuven, Belgium. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2016.10.007DOI Listing
July 2017

Computational quality control tools for mass spectrometry proteomics.

Proteomics 2017 02 17;17(3-4). Epub 2016 Oct 17.

Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.

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http://dx.doi.org/10.1002/pmic.201600159DOI Listing
February 2017

Assessing the Immunosafety of Engineered Nanoparticles with a Novel in Vitro Model Based on Human Primary Monocytes.

ACS Appl Mater Interfaces 2016 Oct 13;8(42):28437-28447. Epub 2016 Oct 13.

Institute of Protein Biochemistry, National Research Council , 80131 Napoli, Italy.

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http://dx.doi.org/10.1021/acsami.6b06278DOI Listing
October 2016

Conformational Space and Stability of ETD Charge Reduction Products of Ubiquitin.

J Am Soc Mass Spectrom 2017 01 5;28(1):69-76. Epub 2016 Aug 5.

Biomolecular and Analytical Mass Spectrometry Group, Department of Chemistry, University of Antwerp, Antwerpen, Belgium.

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http://dx.doi.org/10.1007/s13361-016-1444-7DOI Listing
January 2017

CONSTANd : A Normalization Method for Isobaric Labeled Spectra by Constrained Optimization.

Mol Cell Proteomics 2016 08 14;15(8):2779-90. Epub 2016 Jun 14.

From the: ‡Applied Bio & molecular Systems, VITO, Boeretang 200, 2400 Mol, Belgium; §Center for Proteomics, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium; ‖Center for Statistics, Hasselt University, Agoralaan 1, 3590 Diepenbeek, Belgium

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http://dx.doi.org/10.1074/mcp.M115.056911DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974351PMC
August 2016

Unsupervised Quality Assessment of Mass Spectrometry Proteomics Experiments by Multivariate Quality Control Metrics.

J Proteome Res 2016 Apr 18;15(4):1300-7. Epub 2016 Mar 18.

Department of Mathematics and Computer Science, University of Antwerp , 2020 Antwerp, Belgium.

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http://dx.doi.org/10.1021/acs.jproteome.6b00028DOI Listing
April 2016

Protein complex analysis: From raw protein lists to protein interaction networks.

Mass Spectrom Rev 2017 09 28;36(5):600-614. Epub 2015 Dec 28.

Advanced Database Research and Modelling (ADReM), Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium.

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http://dx.doi.org/10.1002/mas.21485DOI Listing
September 2017

Proteomics applications in Caenorhabditis elegans research.

Biochem Biophys Res Commun 2015 Dec 14;468(4):519-24. Epub 2015 Nov 14.

Center for Proteomics (CFP-CEPROMA), University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp, Belgium; Flemish Institute for Technological Research (VITO), Boeretang 200, B-2400 Mol, Belgium.

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http://dx.doi.org/10.1016/j.bbrc.2015.11.026DOI Listing
December 2015

Open-Source, Platform-Independent Library and Online Scripting Environment for Accessing Thermo Scientific RAW Files.

J Proteome Res 2015 Nov 29;14(11):4940-3. Epub 2015 Oct 29.

Medical Biotechnology Center, VIB , Albert Baertsoenkaai 3, 9000 Ghent, Belgium.

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http://dx.doi.org/10.1021/acs.jproteome.5b00778DOI Listing
November 2015

Differences in the Elemental Isotope Definition May Lead to Errors in Modern Mass-Spectrometry-Based Proteomics.

Anal Chem 2015 Nov 22;87(21):10747-54. Epub 2015 Oct 22.

Interuniversity Institute of Biostatistics and statistical Bioinformatics, Hasselt University , 3590 Diepenbeek, Belgium.

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http://dx.doi.org/10.1021/acs.analchem.5b01165DOI Listing
November 2015

Proteomics in cancer research: Are we ready for clinical practice?

Crit Rev Oncol Hematol 2015 Dec 12;96(3):437-48. Epub 2015 Aug 12.

Flemish Institute for Technological Research (VITO), Mol, Belgium; CFP-CeProMa, University of Antwerp, Antwerp, Belgium.

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http://dx.doi.org/10.1016/j.critrevonc.2015.07.006DOI Listing
December 2015

On the Fine Isotopic Distribution and Limits to Resolution in Mass Spectrometry.

J Am Soc Mass Spectrom 2015 Oct 12;26(10):1732-45. Epub 2015 Aug 12.

Institute of Informatics, University of Warsaw, Warsaw, Poland.

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http://dx.doi.org/10.1007/s13361-015-1180-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4565875PMC
October 2015

An effective plasma membrane proteomics approach for small tissue samples.

Sci Rep 2015 Jun 5;5:10917. Epub 2015 Jun 5.

KU Leuven, Department of Biology, Laboratory of Neuroplasticity and Neuroproteomics, Leuven, Belgium.

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http://dx.doi.org/10.1038/srep10917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4456939PMC
June 2015

Characterization of top-down ETD in a travelling-wave ion guide.

Methods 2015 Nov 23;89:22-9. Epub 2015 May 23.

Biomolecular & Analytical Mass Spectrometry Group, Department of Chemistry, University of Antwerp, Antwerpen, Belgium; UA-VITO Center for Proteomics, University of Antwerp, Antwerpen, Belgium. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10462023150021
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http://dx.doi.org/10.1016/j.ymeth.2015.05.019DOI Listing
November 2015

iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring.

J Proteome Res 2015 May 2;14(5):2360-6. Epub 2015 Apr 2.

§Flemish Institute for Technological Research (VITO), Boeretang 200, BE-2400 Mol, Belgium.

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http://dx.doi.org/10.1021/acs.jproteome.5b00127DOI Listing
May 2015

Determination of variation parameters as a crucial step in designing TMT-based clinical proteomics experiments.

PLoS One 2015 16;10(3):e0120115. Epub 2015 Mar 16.

Flemish Institute for Technological Research (VITO), Mol, Belgium; CFP-CeProMa, University of Antwerp, Antwerp, Belgium.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0120115PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4361338PMC
October 2015

A comparative study between spiral-filter press and belt press implemented in a cloudy apple juice production process.

Food Chem 2015 Apr 12;173:986-96. Epub 2014 Oct 12.

Institute for Agricultural and Fisheries Research (ILVO), Technology and Food Sciences Unit (T&V), Product Quality and Innovation (PI), Burgemeester Van Gansberghelaan 115/1, 9820 Merelbeke, Belgium.

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http://dx.doi.org/10.1016/j.foodchem.2014.10.019DOI Listing
April 2015

Pilot-scale production of cloudy juice from low-quality pear fruit under low-oxygen conditions.

Food Chem 2015 Apr 12;173:827-37. Epub 2014 Oct 12.

Institute for Agricultural and Fisheries Research (ILVO), Technology and Food Sciences Unit, Product Quality and Innovation Research Area, Burgemeester Van Gansberghelaan 115/1, 9820 Merelbeke, Belgium.

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http://dx.doi.org/10.1016/j.foodchem.2014.10.018DOI Listing
April 2015

A generic approach for "shotgun" analysis of the soluble proteome of plant cell suspension cultures.

J Chromatogr B Analyt Technol Biomed Life Sci 2015 Jan 27;974:48-56. Epub 2014 Oct 27.

Center for Proteomics (CFP), Groenenborgerlaan 171, B-2020 Antwerp, Belgium; Vlaamse Instelling voor Technologisch Onderzoek (VITO), Boeretang 200, B-2400 Mol, Belgium; Laboratory for Ecophysiology, Biochemistry and Toxicology, Department of Biology, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp, Belgium.

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http://dx.doi.org/10.1016/j.jchromb.2014.10.024DOI Listing
January 2015

The benefits and limitations of reaction cell and sector field inductively coupled plasma mass spectrometry in the detection and quantification of phosphopeptides.

Rapid Commun Mass Spectrom 2015 Jan;29(1):35-44

Flemish Institute for Technological Research (VITO), Mol, Belgium; CFP-CeProMa, University of Antwerp, Antwerp, Belgium; KU Leuven, Research Group of Functional Genomics and Proteomics, Leuven, Belgium.

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http://dx.doi.org/10.1002/rcm.7079DOI Listing
January 2015

Unravelling associations between unassigned mass spectrometry peaks with frequent itemset mining techniques.

Proteome Sci 2014 18;12(1):54. Epub 2014 Nov 18.

Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium ; Biomedical Informatics Research Center Antwerp (biomina), University of Antwerp / Antwerp University Hospital, Edegem, Belgium.

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http://dx.doi.org/10.1186/s12953-014-0054-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243190PMC
November 2014

Towards automated discrimination of lipids versus peptides from full scan mass spectra.

EuPA Open Proteom 2014 Sep;4:87-100

Applied Bio & molecular Systems, VITO, Mol, Belgium ; Center for Proteomics, Antwerp, Belgium ; Interuniversity Institute for Biostatistics and Statistical Bioinformatics, Hasselt University, Diepenbeek, Belgium.

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http://dx.doi.org/10.1016/j.euprot.2014.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4234154PMC
September 2014

The use of elemental mass spectrometry in phosphoproteomic applications.

Mass Spectrom Rev 2016 May-Jun;35(3):350-60. Epub 2014 Aug 19.

Flemish Institute for Technological Research (VITO), Mol, Belgium.

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http://dx.doi.org/10.1002/mas.21440DOI Listing
December 2016

Efficient reduction of candidate matches in peptide spectrum library searching using the top k most intense peaks.

J Proteome Res 2014 Sep 24;13(9):4175-83. Epub 2014 Jul 24.

Department of Mathematics and Computer Science, University of Antwerp , B-2020 Antwerp, Belgium.

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http://dx.doi.org/10.1021/pr401269zDOI Listing
September 2014

jqcML: an open-source java API for mass spectrometry quality control data in the qcML format.

J Proteome Res 2014 Jul 17;13(7):3484-7. Epub 2014 Jun 17.

Department of Mathematics and Computer Science, University of Antwerp , Middelheimlaan 1, B-2020 Antwerp, Belgium.

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http://dx.doi.org/10.1021/pr401274zDOI Listing
July 2014

Colorectal cancer biomarker discovery and validation using LC-MS/MS-based proteomics in blood: truth or dare?

Expert Rev Proteomics 2014 Aug 7;11(4):449-63. Epub 2014 Apr 7.

KU Leuven, Animal Physiology and Neurobiology Section, Naamsestraat 59, BE-3000 Leuven, Belgium.

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http://dx.doi.org/10.1586/14789450.2014.905743DOI Listing
August 2014

BRAIN 2.0: time and memory complexity improvements in the algorithm for calculating the isotope distribution.

J Am Soc Mass Spectrom 2014 Apr 12;25(4):588-94. Epub 2014 Feb 12.

College of Inter-faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Warsaw, Poland,

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http://link.springer.com/10.1007/s13361-013-0796-5
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http://dx.doi.org/10.1007/s13361-013-0796-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3953541PMC
April 2014

ETD allows for native surface mapping of a 150 kDa noncovalent complex on a commercial Q-TWIMS-TOF instrument.

J Am Soc Mass Spectrom 2014 Mar 10;25(3):343-50. Epub 2014 Jan 10.

Biomolecular and Analytical Mass Spectrometry group, Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerpen, Belgium.

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http://dx.doi.org/10.1007/s13361-013-0798-3DOI Listing
March 2014

The use of the isotopic distribution as a complementary quality metric to assess tandem mass spectra results.

J Proteomics 2014 Feb 31;98:150-8. Epub 2013 Dec 31.

Interuniversity Institute for Biostatistics and statistical Bioinformatics, Hasselt University, Belgium; VITO, Mol, Belgium; Center for Proteomics, Antwerp, Belgium. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S18743919130064
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http://dx.doi.org/10.1016/j.jprot.2013.12.013DOI Listing
February 2014

Machine learning applications in proteomics research: how the past can boost the future.

Proteomics 2014 Mar 21;14(4-5):353-66. Epub 2014 Jan 21.

Department of Medical Protein Research, VIB, Ghent, Belgium; Faculty of Medicine and Health Sciences, Department of Biochemistry, Ghent University, Ghent, Belgium; Flemish Institute for Technological Research (VITO), Boeretang, Mol, Belgium.

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http://doi.wiley.com/10.1002/pmic.201300289
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http://dx.doi.org/10.1002/pmic.201300289DOI Listing
March 2014

Characterization of the peripheral blood transcriptome in a repeated measures design using a panel of healthy individuals.

Genomics 2014 Jan 7;103(1):31-9. Epub 2013 Dec 7.

Flemish Institute for Technological Research, Unit Environmental Risk and Health, Belgium; University of Antwerp, Department of Biomedical Sciences, Belgium; University of Southern Denmark, Department of Environmental Medicine, Denmark.

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http://dx.doi.org/10.1016/j.ygeno.2013.11.006DOI Listing
January 2014

Comparison of the Mahalanobis distance and Pearson's χ² statistic as measures of similarity of isotope patterns.

J Am Soc Mass Spectrom 2014 Feb 19;25(2):293-6. Epub 2013 Nov 19.

I-BioStat, Hasselt University, Hasselt, Belgium.

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http://dx.doi.org/10.1007/s13361-013-0773-zDOI Listing
February 2014

Comment on "Computation of isotopic peak center-mass distribution by fourier transform".

Anal Chem 2013 Dec 4;85(24):12189-12192. Epub 2013 Dec 4.

Applied Bio & Molecular Systems, Vlaamse Instelling Voor Technologisch Onderzoek (VITO), Mol, Belgium.

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http://dx.doi.org/10.1021/ac402731hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119064PMC
December 2013

An efficient method to calculate the aggregated isotopic distribution and exact center-masses.

J Am Soc Mass Spectrom 2012 Apr 15;23(4):753-63. Epub 2012 Feb 15.

I-BioStat, Hasselt University, Diepenbeek, Belgium.

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http://link.springer.com/10.1007/s13361-011-0326-2
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http://dx.doi.org/10.1007/s13361-011-0326-2DOI Listing
April 2012

A bayesian model averaging approach to the quantification of overlapping peptides in an maldi-tof mass spectrum.

Int J Proteomics 2011 23;2011:928391. Epub 2011 May 23.

Department of Electrical Engineering, ESAT/SCD Katholieke Universiteit Leuven, Kasteelpark Arenberg 10, Bus 2446, 3001 Heverlee, Belgium.

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https://doclib.uhasselt.be/dspace/bitstream/1942/13353/1/Mod
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http://downloads.hindawi.com/journals/ijpro/2011/928391.pdf
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http://www.hindawi.com/journals/ijpro/2011/928391/
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http://dx.doi.org/10.1155/2011/928391DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3200211PMC
November 2011

The isotopic distribution conundrum.

Mass Spectrom Rev 2012 Jan-Feb;31(1):96-109. Epub 2011 May 16.

Flemish Institute for Technological Research, VITO, Mol, Belgium.

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http://dx.doi.org/10.1002/mas.20339DOI Listing
April 2012

A Markov-chain model for the analysis of high-resolution enzymatically 18O-labeled mass spectra.

Stat Appl Genet Mol Biol 2011 6;10:Article 1. Epub 2011 Jan 6.

VITO-Flemish Institute for Technological Research.

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http://dx.doi.org/10.2202/1544-6115.1538DOI Listing
April 2011

Markov-chain-based heteroscedastic regression model for the analysis of high-resolution enzymatically 18O-labeled mass spectra.

J Proteome Res 2010 May;9(5):2669-77

I-BioStat, Hasselt University, Diepenbeek, Belgium and VITO, Mol, Belgium.

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http://dx.doi.org/10.1021/pr100169aDOI Listing
May 2010

A strategy for the prior processing of high-resolution mass spectral data obtained from high-dimensional combined fractional diagonal chromatography.

J Mass Spectrom 2009 Apr;44(4):516-29

Interuniversity Institute for Biostatistics and statistical Bioinformatics, Katholieke Universiteit Leuven, Leuven, Belgium.

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http://dx.doi.org/10.1002/jms.1527DOI Listing
April 2009

A model-based method for the prediction of the isotopic distribution of peptides.

J Am Soc Mass Spectrom 2008 May 31;19(5):703-12. Epub 2008 Jan 31.

Center for Statistics, Hasselt University, Diepenbeek, Belgium.

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http://dx.doi.org/10.1016/j.jasms.2008.01.009DOI Listing
May 2008

Using a Poisson approximation to predict the isotopic distribution of sulphur-containing peptides in a peptide-centric proteomic approach.

Rapid Commun Mass Spectrom 2007 ;21(20):3387-91

Center for Statistics, Hasselt University, Agoralaan D, 3590 Diepenbeek, Belgium.

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http://doi.wiley.com/10.1002/rcm.3237
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http://dx.doi.org/10.1002/rcm.3237DOI Listing
November 2007