Dirk Gevers

Dirk Gevers

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Dirk Gevers

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Genetic Factors and the Intestinal Microbiome Guide Development of Microbe-Based Therapies for Inflammatory Bowel Diseases.

Gastroenterology 2019 06 14;156(8):2174-2189. Epub 2019 Mar 14.

Department of Pathology, University of California-San Diego, La Jolla, California; Chiba University and University of California-San Diego Center for Mucosal Immunology, Allergy, and Vaccines (CU-UCSD cMAV), La Jolla, California. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2019.03.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6568267PMC
June 2019

Transmission of human-associated microbiota along family and social networks.

Nat Microbiol 2019 06 25;4(6):964-971. Epub 2019 Mar 25.

Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41564-019-0409-6DOI Listing
June 2019

The classroom microbiome and asthma morbidity in children attending 3 inner-city schools.

J Allergy Clin Immunol 2018 06 5;141(6):2311-2313. Epub 2018 Mar 5.

Harvard Medical School, Boston, Mass; Broad Institute of MIT and Harvard University, Cambridge, Mass. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2018.02.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5994187PMC
June 2018

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation.

Cell Host Microbe 2018 Feb;23(2):229-240.e5

Broad Institute of MIT and Harvard, Cambridge, MA, USA; The Center for Microbiome Informatics and Therapeutics, MIT, Cambridge, MA, USA; Finch Therapeutics, Somerville, MA, USA; Department of Biological Engineering, MIT, Cambridge, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2018.01.003DOI Listing
February 2018

A Microbiome Foundation for the Study of Crohn's Disease.

Cell Host Microbe 2017 Mar;21(3):301-304

Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease; Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA.

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http://dx.doi.org/10.1016/j.chom.2017.02.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5684696PMC
March 2017

Increased Intestinal Microbial Diversity Following Fecal Microbiota Transplant for Active Crohn's Disease.

Inflamm Bowel Dis 2016 09;22(9):2182-90

*Division of Gastroenterology, Beth-Israel Deaconess Medical Center, Inflammatory Bowel Disease Center, Harvard Medical School, Boston, Massachusetts; †Broad Institute of MIT and Harvard, Cambridge, Massachusetts; ‡Department of Computer Science, Aalto University School of Science, Espoo, Finland; §Division of Gastroenterology, Crohn's and Colitis Center, Brigham and Women's Hospital, and Harvard Medical School, Boston, Massachusetts; ‖Gastrointestinal Unit, Center for the Study of Inflammatory Bowel Disease, Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts; and ¶Janssen Human Microbiome Institute, Janssen R&D, Cambridge, Massachusetts.

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http://dx.doi.org/10.1097/MIB.0000000000000893DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995064PMC
September 2016

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability.

Sci Transl Med 2016 06;8(343):343ra81

Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard University, Cambridge, MA 02142, USA. Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA. Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA. Center for Microbiome Informatics and Therapeutics, MIT, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1126/scitranslmed.aad0917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5032909PMC
June 2016

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans.

Cell 2016 May 28;165(4):842-53. Epub 2016 Apr 28.

Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.04.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950857PMC
May 2016

The influence of a short-term gluten-free diet on the human gut microbiome.

Genome Med 2016 Apr 21;8(1):45. Epub 2016 Apr 21.

Department of Genetics, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands.

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http://dx.doi.org/10.1186/s13073-016-0295-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4841035PMC
April 2016

ConStrains identifies microbial strains in metagenomic datasets.

Nat Biotechnol 2015 Oct 7;33(10):1045-52. Epub 2015 Sep 7.

Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nbt.3319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676274PMC
October 2015

The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids.

Circ Res 2015 Oct 10;117(9):817-24. Epub 2015 Sep 10.

From the Department of Pediatrics (J.F., E.B., M.H.H.), Department of Genetics (J.F., M.J.B., M.C.C., E.F.T., A.M., J.A.M.D., J.M., L.F., C.W., A.Z.), and Department of Gastroenterology and Hepatology (F.I., R.K.W.), University of Groningen, University Medical Center Groningen, Groningen, The Netherlands; Top Institute Food and Nutrition, Wageningen, The Netherlands (E.F.T., J.A.M.D., A.Z.); Department of Immunology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland (J.M.); Broad Institute of MIT and Harvard, Cambridge, MA (T.W.P., R.J.X., D.G.); and Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease (R.J.X.) and Center for Computational and Integrative Biology (R.J.X.), Massachusetts General Hospital and Harvard Medical School, Boston.

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http://dx.doi.org/10.1161/CIRCRESAHA.115.306807DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596485PMC
October 2015

Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning.

Nat Biotechnol 2015 Oct 14;33(10):1053-60. Epub 2015 Sep 14.

Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nbt.3329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4720164PMC
October 2015

Host genetic variation impacts microbiome composition across human body sites.

Genome Biol 2015 Sep 15;16:191. Epub 2015 Sep 15.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1186/s13059-015-0759-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570153PMC
September 2015

Identifying personal microbiomes using metagenomic codes.

Proc Natl Acad Sci U S A 2015 Jun 11;112(22):E2930-8. Epub 2015 May 11.

Biostatistics Department, Harvard School of Public Health, Boston, MA 02115; Microbial Systems and Communities, Genome Sequencing and Analysis Program, The Broad Institute, Cambridge, MA 02142;

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http://dx.doi.org/10.1073/pnas.1423854112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460507PMC
June 2015

Dirk Gevers.

Nat Rev Drug Discov 2015 May 24;14(5):305. Epub 2015 Apr 24.

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http://dx.doi.org/10.1038/nrd4614DOI Listing
May 2015

Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque.

Cell Host Microbe 2015 Mar 26;17(3):385-391. Epub 2015 Feb 26.

Department of Biostatistics, Harvard School of Public Health, Boston, MA 02115, USA; Broad Institute, Cambridge, MA 02142, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2015.01.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4369771PMC
March 2015

The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.

Cell Host Microbe 2015 Feb 5;17(2):260-73. Epub 2015 Feb 5.

Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2015.01.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4689191PMC
February 2015

Complex host genetics influence the microbiome in inflammatory bowel disease.

Genome Med 2014 2;6(12):107. Epub 2014 Dec 2.

Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142 USA ; Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114 USA ; Division of Gastroenterology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114 USA.

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http://dx.doi.org/10.1186/s13073-014-0107-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4292994PMC
January 2015

Advancing the microbiome research community.

Cell 2014 Oct;159(2):227-30

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA; Center for Health-Related Informatics and Bioimaging, University of Maryland School of Medicine, Baltimore, MD 21201, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.09.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4221798PMC
October 2014

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.

ISME J 2014 Jul 6;8(7):1403-17. Epub 2014 Feb 6.

1] Harvard School of Public Health, Boston, MA, USA [2] Harvard Medical School, Boston, MA, USA [3] Broad Institute of Harvard and MIT, Cambridge, MA, USA [4] Dana-Farber Cancer Institute, Boston, MA, USA.

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http://dx.doi.org/10.1038/ismej.2014.3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4069400PMC
July 2014

The microbiome in inflammatory bowel disease: current status and the future ahead.

Gastroenterology 2014 May 19;146(6):1489-99. Epub 2014 Feb 19.

Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts.

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http://dx.doi.org/10.1053/j.gastro.2014.02.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4034132PMC
May 2014

Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota.

ISME J 2014 Mar 10;8(3):493-503. Epub 2013 Oct 10.

Department of Environmental Health, Graduate School of Public Health, Seoul National University, Gwanak-gu, Seoul, South Korea.

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http://dx.doi.org/10.1038/ismej.2013.167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3930310PMC
March 2014

MetaRef: a pan-genomic database for comparative and community microbial genomics.

Nucleic Acids Res 2014 Jan 6;42(Database issue):D617-24. Epub 2013 Nov 6.

Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA, Institute for Genome Sciences, University of Maryland School of Medicine, 801 W Baltimore St, Baltimore, MD 21201, USA, Biostatistics Department, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA 02115, USA and Centre for Integrative Biology, University of Trento, via Sommarive 14, 38123 Povo (Trento), Italy.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkt1078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964974PMC
January 2014

Bioinformatics for the Human Microbiome Project.

PLoS Comput Biol 2012 29;8(11):e1002779. Epub 2012 Nov 29.

The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.

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https://dx.plos.org/10.1371/journal.pcbi.1002779
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http://dx.doi.org/10.1371/journal.pcbi.1002779DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3510052PMC
April 2013

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants.

Microbiome 2013 Apr 16;1(1):13. Epub 2013 Apr 16.

Perinatal Institute, Cincinnati Children's Hospital Medical Center, Department Pediatrics, University of Cincinnati College of Medicine, 3333 Burnet Ave, MLC 7009, Cincinnati, OH 45229, USA.

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http://microbiomejournal.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/2049-2618-1-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3971624PMC
April 2013

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

Nat Methods 2013 Jan 2;10(1):57-9. Epub 2012 Dec 2.

Department of Viticulture and Enology, University of California, Davis, Davis, California, USA.

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http://dx.doi.org/10.1038/nmeth.2276DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531572PMC
January 2013

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy.

PLoS One 2012 13;7(6):e36466. Epub 2012 Jun 13.

Department of Obstetrics & Gynecology, Division of Maternal-Fetal Medicine, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0036466PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3374618PMC
December 2012

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.

PLoS One 2011 14;6(12):e27310. Epub 2011 Dec 14.

Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0027310PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3237409PMC
August 2012

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites.

J Allergy Clin Immunol 2012 May;129(5):1204-8

Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO, USA.

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http://dx.doi.org/10.1016/j.jaci.2012.03.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342686PMC
May 2012

Experimental and analytical tools for studying the human microbiome.

Nat Rev Genet 2011 Dec 16;13(1):47-58. Epub 2011 Dec 16.

Department of Molecular, Cellular and Developmental Biology, University of Colorado at Boulder, 347 UCB, Boulder, Colorado 80309, USA.

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http://www.nature.com/articles/nrg3129
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http://dx.doi.org/10.1038/nrg3129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5119550PMC
December 2011

The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment.

Cell Host Microbe 2011 Sep;10(3):260-72

Molecular Pathogenesis Program, The Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S193131281100255
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http://dx.doi.org/10.1016/j.chom.2011.08.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3209701PMC
September 2011

Metagenomic biomarker discovery and explanation.

Genome Biol 2011 Jun 24;12(6):R60. Epub 2011 Jun 24.

Department of Biostatistics, 677 Huntington Avenue, Harvard School of Public Health, Boston, MA 02115, USA.

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http://www.researchgate.net/profile/Dirk_Gevers/publication/
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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
Publisher Site
http://dx.doi.org/10.1186/gb-2011-12-6-r60DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218848PMC
June 2011

Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis.

Inflamm Bowel Dis 2011 May 15;17(5):1092-100. Epub 2010 Sep 15.

Division of Pediatric Gastroenterology, Department of Pediatrics, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.

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http://dx.doi.org/10.1002/ibd.21460DOI Listing
May 2011

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Authors:
Pelin Yilmaz Renzo Kottmann Dawn Field Rob Knight James R Cole Linda Amaral-Zettler Jack A Gilbert Ilene Karsch-Mizrachi Anjanette Johnston Guy Cochrane Robert Vaughan Christopher Hunter Joonhong Park Norman Morrison Philippe Rocca-Serra Peter Sterk Manimozhiyan Arumugam Mark Bailey Laura Baumgartner Bruce W Birren Martin J Blaser Vivien Bonazzi Tim Booth Peer Bork Frederic D Bushman Pier Luigi Buttigieg Patrick S G Chain Emily Charlson Elizabeth K Costello Heather Huot-Creasy Peter Dawyndt Todd DeSantis Noah Fierer Jed A Fuhrman Rachel E Gallery Dirk Gevers Richard A Gibbs Inigo San Gil Antonio Gonzalez Jeffrey I Gordon Robert Guralnick Wolfgang Hankeln Sarah Highlander Philip Hugenholtz Janet Jansson Andrew L Kau Scott T Kelley Jerry Kennedy Dan Knights Omry Koren Justin Kuczynski Nikos Kyrpides Robert Larsen Christian L Lauber Teresa Legg Ruth E Ley Catherine A Lozupone Wolfgang Ludwig Donna Lyons Eamonn Maguire Barbara A Methé Folker Meyer Brian Muegge Sara Nakielny Karen E Nelson Diana Nemergut Josh D Neufeld Lindsay K Newbold Anna E Oliver Norman R Pace Giriprakash Palanisamy Jörg Peplies Joseph Petrosino Lita Proctor Elmar Pruesse Christian Quast Jeroen Raes Sujeevan Ratnasingham Jacques Ravel David A Relman Susanna Assunta-Sansone Patrick D Schloss Lynn Schriml Rohini Sinha Michelle I Smith Erica Sodergren Aymé Spo Jesse Stombaugh James M Tiedje Doyle V Ward George M Weinstock Doug Wendel Owen White Andrew Whiteley Andreas Wilke Jennifer R Wortman Tanya Yatsunenko Frank Oliver Glöckner

Nat Biotechnol 2011 May;29(5):415-20

Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.

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https://darchive.mblwhoilibrary.org/bitstream/handle/1912/46
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http://www.nature.com/doifinder/10.1038/nbt.1823
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http://dx.doi.org/10.1038/nbt.1823DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367316PMC
May 2011

High-quality draft genome sequences of 28 Enterococcus sp. isolates.

J Bacteriol 2010 May 5;192(9):2469-70. Epub 2010 Mar 5.

Department of Ophthalmology, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1128/JB.00153-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2863476PMC
May 2010

Vibrio chromosomes share common history.

BMC Microbiol 2010 May 10;10:137. Epub 2010 May 10.

Dept, of Civil and Environmental Engineering, 15 Vassar Street, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1186/1471-2180-10-137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875227PMC
May 2010

A catalog of reference genomes from the human microbiome.

Science 2010 May;328(5981):994-9

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http://dx.doi.org/10.1126/science.1183605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940224PMC
May 2010

Resource partitioning and sympatric differentiation among closely related bacterioplankton.

Science 2008 May;320(5879):1081-5

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1126/science.1157890DOI Listing
May 2008

Conservation of the chitin utilization pathway in the Vibrionaceae.

Appl Environ Microbiol 2008 Jan 12;74(1):44-51. Epub 2007 Oct 12.

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, 48-417, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1128/AEM.01412-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2223224PMC
January 2008

Identification of lactobacilli by pheS and rpoA gene sequence analyses.

Int J Syst Evol Microbiol 2007 Dec;57(Pt 12):2777-89

Department of Biology and Biotechnology, Faculty of Sciences, An-Najah National University, Nablus, Palestine.

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http://dx.doi.org/10.1099/ijs.0.64711-0DOI Listing
December 2007

Nitric oxide reductase (norB) gene sequence analysis reveals discrepancies with nitrite reductase (nir) gene phylogeny in cultivated denitrifiers.

Environ Microbiol 2007 Apr;9(4):1072-7

Laboratory of Microbiology, Department of Biochemistry, Physiology and Microbiology, Ghent University, K.L. Ledeganckstraat 35, B-9000 Gent, Belgium.

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http://dx.doi.org/10.1111/j.1462-2920.2006.01194.xDOI Listing
April 2007

The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers.

Environ Microbiol 2006 Nov;8(11):2012-21

Laboratory of Microbiology, Department of Biochemistry, Physiology and Microbiology, Ghent University, K. L. Ledeganckstraat 35, B-9000 Gent, Belgium.

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http://dx.doi.org/10.1111/j.1462-2920.2006.01081.xDOI Listing
November 2006

Stepping stones towards a new prokaryotic taxonomy.

Philos Trans R Soc Lond B Biol Sci 2006 Nov;361(1475):1911-6

Laboratory of Microbiology and BCCM/LMG Bacteria Collection, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium.

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http://www.royalsocietypublishing.org/doi/10.1098/rstb.2006.
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http://dx.doi.org/10.1098/rstb.2006.1915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1764938PMC
November 2006

Opinion: Re-evaluating prokaryotic species.

Nat Rev Microbiol 2005 Sep;3(9):733-9

Laboratory of Microbiology and the Bioinformatics and Evolutionary Genomics Research Group, Ghent University/VIB, Ghent, Belgium.

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http://www.nature.com/articles/nrmicro1236
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http://dx.doi.org/10.1038/nrmicro1236DOI Listing
September 2005

Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes.

Microbiology 2005 Jul;151(Pt 7):2141-50

Laboratory of Microbiology, Ghent University, K. L. Ledeganckstraat 35, Ghent 9000, Belgium.

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http://dx.doi.org/10.1099/mic.0.27840-0DOI Listing
July 2005

Towards a prokaryotic genomic taxonomy.

FEMS Microbiol Rev 2005 Apr;29(2):147-67

Laboratory of Microbiology, Ghent University, Ledeganckstraat 35, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1016/j.femsre.2004.11.004DOI Listing
April 2005

Genomic and phenotypic comparison of Bacillus fumarioli isolates from geothermal Antarctic soil and gelatine.

Res Microbiol 2004 Jul-Aug;155(6):483-90

Laboratory of Microbiology, Department of Biochemistry, Physiology and Microbiology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium.

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http://dx.doi.org/10.1016/j.resmic.2004.02.007DOI Listing
November 2004

Gene duplication and biased functional retention of paralogs in bacterial genomes.

Trends Microbiol 2004 Apr;12(4):148-54

Bioinformatics and Evolutionary Genomics, Ghent University/Flanders Interuniversity Institute for Biotechnology (VIB), Technologiepark 927, B-9052 Ghent, Belgium.

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http://dx.doi.org/10.1016/j.tim.2004.02.007DOI Listing
April 2004

Identification of Bifidobacterium species using rep-PCR fingerprinting.

Syst Appl Microbiol 2003 Nov;26(4):557-63

Laboratory of Microbiology, Department of Biochemistry, Physiology and Microbiology, Ghent University, Gent, Belgium.

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http://dx.doi.org/10.1078/072320203770865864DOI Listing
November 2003

In vitro conjugal transfer of tetracycline resistance from Lactobacillus isolates to other Gram-positive bacteria.

FEMS Microbiol Lett 2003 Aug;225(1):125-30

Laboratory of Microbiology, Faculty of Sciences, Ghent University, B-9000 Ghent, Belgium.

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http://dx.doi.org/10.1016/S0378-1097(03)00505-6DOI Listing
August 2003

Biphasic kinetics of growth and bacteriocin production with Lactobacillus amylovorus DCE 471 occur under stress conditions.

Microbiology 2003 Apr;149(Pt 4):1073-82

Research Group of Industrial Microbiology, Fermentation Technology and Downstream Processing (IMDO), Department of Applied Biological Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussels, Belgium.

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http://dx.doi.org/10.1099/mic.0.25880-0DOI Listing
April 2003

Molecular characterization of tet(M) genes in Lactobacillus isolates from different types of fermented dry sausage.

Appl Environ Microbiol 2003 Feb;69(2):1270-5

Laboratory of Microbiology, Faculty of Sciences, Ghent University, B-9000 Ghent, Belgium.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC143591PMC
http://dx.doi.org/10.1128/aem.69.2.1270-1275.2003DOI Listing
February 2003