Publications by authors named "Dimitri Livitz"

19Publications

Programmable topotaxis of magnetic rollers in time-varying fields.

Authors:
Yong Dou Peter M Tzelios Dimitri Livitz Kyle J M Bishop

Soft Matter 2020 Dec 17. Epub 2020 Dec 17.

Department of Chemical Engineering, Columbia University, New York, NY, USA.

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December 2020

Framework for quality assessment of whole genome cancer sequences.

Authors:
Justin P Whalley Ivo Buchhalter Esther Rheinbay Keiran M Raine Miranda D Stobbe Kortine Kleinheinz Johannes Werner Sergi Beltran Marta Gut Daniel Hübschmann Barbara Hutter Dimitri Livitz Marc D Perry Mara Rosenberg Gordon Saksena Jean-Rémi Trotta Roland Eils Daniela S Gerhard Peter J Campbell Matthias Schlesner Ivo G Gut

Nat Commun 2020 10 7;11(1):5040. Epub 2020 Oct 7.

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Carrer Baldiri i Reixac 4, 08028, Barcelona, Spain.

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October 2020

The evolutionary history of 2,658 cancers.

Authors:
Moritz Gerstung Clemency Jolly Ignaty Leshchiner Stefan C Dentro Santiago Gonzalez Daniel Rosebrock Thomas J Mitchell Yulia Rubanova Pavana Anur Kaixian Yu Maxime Tarabichi Amit Deshwar Jeff Wintersinger Kortine Kleinheinz Ignacio Vázquez-García Kerstin Haase Lara Jerman Subhajit Sengupta Geoff Macintyre Salem Malikic Nilgun Donmez Dimitri G Livitz Marek Cmero Jonas Demeulemeester Steven Schumacher Yu Fan Xiaotong Yao Juhee Lee Matthias Schlesner Paul C Boutros David D Bowtell Hongtu Zhu Gad Getz Marcin Imielinski Rameen Beroukhim S Cenk Sahinalp Yuan Ji Martin Peifer Florian Markowetz Ville Mustonen Ke Yuan Wenyi Wang Quaid D Morris Paul T Spellman David C Wedge Peter Van Loo

Nature 2020 02 6;578(7793):122-128. Epub 2020 Feb 6.

The Francis Crick Institute, London, UK.

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February 2020

Author Correction: Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers.

Authors:
Aparna R Parikh Ignaty Leshchiner Liudmila Elagina Lipika Goyal Chaya Levovitz Giulia Siravegna Dimitri Livitz Kahn Rhrissorrakrai Elizabeth E Martin Emily E Van Seventer Megan Hanna Kara Slowik Filippo Utro Christopher J Pinto Alicia Wong Brian P Danysh Ferran Fece de la Cruz Isobel J Fetter Brandon Nadres Heather A Shahzade Jill N Allen Lawrence S Blaszkowsky Jeffrey W Clark Bruce Giantonio Janet E Murphy Ryan D Nipp Eric Roeland David P Ryan Colin D Weekes Eunice L Kwak Jason E Faris Jennifer Y Wo François Aguet Ipsita Dey-Guha Mehlika Hazar-Rethinam Dora Dias-Santagata David T Ting Andrew X Zhu Theodore S Hong Todd R Golub A John Iafrate Viktor A Adalsteinsson Alberto Bardelli Laxmi Parida Dejan Juric Gad Getz Ryan B Corcoran

Nat Med 2019 Dec;25(12):1949

Cancer Center, Massachusetts General Hospital, Boston, MA, USA.

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December 2019

Mitochondrial Reprogramming Underlies Resistance to BCL-2 Inhibition in Lymphoid Malignancies.

Authors:
Romain Guièze Vivian M Liu Daniel Rosebrock Alexis A Jourdain María Hernández-Sánchez Aina Martinez Zurita Jing Sun Elisa Ten Hacken Kaitlyn Baranowski Philip A Thompson Jin-Mi Heo Zachary Cartun Ozan Aygün J Bryan Iorgulescu Wandi Zhang Giulia Notarangelo Dimitri Livitz Shuqiang Li Matthew S Davids Anat Biran Stacey M Fernandes Jennifer R Brown Ana Lako Zoe B Ciantra Matthew A Lawlor Derin B Keskin Namrata D Udeshi William G Wierda Kenneth J Livak Anthony G Letai Donna Neuberg J Wade Harper Steven A Carr Federica Piccioni Christopher J Ott Ignaty Leshchiner Cory M Johannessen John Doench Vamsi K Mootha Gad Getz Catherine J Wu

Cancer Cell 2019 10 19;36(4):369-384.e13. Epub 2019 Sep 19.

Department of Medical Oncology, Dana-Farber Cancer Institute, 450 Brookline Avenue, Dana Building, Room DA-520, Boston MA 02215-02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Harvard Medical School, Boston, MA 02215, USA; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02215, USA. Electronic address:

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October 2019

Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers.

Authors:
Aparna R Parikh Ignaty Leshchiner Liudmila Elagina Lipika Goyal Chaya Levovitz Giulia Siravegna Dimitri Livitz Kahn Rhrissorrakrai Elizabeth E Martin Emily E Van Seventer Megan Hanna Kara Slowik Filippo Utro Christopher J Pinto Alicia Wong Brian P Danysh Ferran Fece de la Cruz Isobel J Fetter Brandon Nadres Heather A Shahzade Jill N Allen Lawrence S Blaszkowsky Jeffrey W Clark Bruce Giantonio Janet E Murphy Ryan D Nipp Eric Roeland David P Ryan Colin D Weekes Eunice L Kwak Jason E Faris Jennifer Y Wo François Aguet Ipsita Dey-Guha Mehlika Hazar-Rethinam Dora Dias-Santagata David T Ting Andrew X Zhu Theodore S Hong Todd R Golub A John Iafrate Viktor A Adalsteinsson Alberto Bardelli Laxmi Parida Dejan Juric Gad Getz Ryan B Corcoran

Nat Med 2019 09 9;25(9):1415-1421. Epub 2019 Sep 9.

Cancer Center, Massachusetts General Hospital, Boston, MA, USA.

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September 2019

RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues.

Authors:
Keren Yizhak François Aguet Jaegil Kim Julian M Hess Kirsten Kübler Jonna Grimsby Ruslana Frazer Hailei Zhang Nicholas J Haradhvala Daniel Rosebrock Dimitri Livitz Xiao Li Eila Arich-Landkof Noam Shoresh Chip Stewart Ayellet V Segrè Philip A Branton Paz Polak Kristin G Ardlie Gad Getz

Science 2019 Jun;364(6444)

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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June 2019

Growth dynamics in naturally progressing chronic lymphocytic leukaemia.

Authors:
Michaela Gruber Ivana Bozic Ignaty Leshchiner Dimitri Livitz Kristen Stevenson Laura Rassenti Daniel Rosebrock Amaro Taylor-Weiner Oriol Olive Reaha Goyetche Stacey M Fernandes Jing Sun Chip Stewart Alicia Wong Carrie Cibulskis Wandi Zhang Johannes G Reiter Jeffrey M Gerold John G Gribben Kanti R Rai Michael J Keating Jennifer R Brown Donna Neuberg Thomas J Kipps Martin A Nowak Gad Getz Catherine J Wu

Nature 2019 06 29;570(7762):474-479. Epub 2019 May 29.

Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.

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June 2019

Mechanisms of acquired resistance to rapalogs in metastatic renal cell carcinoma.

Authors:
Lana Hamieh Toni K Choueiri Barbara Ogórek Damir Khabibullin Daniel Rosebrock Dimitri Livitz Andre Fay Jean-Christophe Pignon David F McDermott Neeraj Agarwal Wenhua Gao Sabina Signoretti David J Kwiatkowski

PLoS Genet 2018 09 26;14(9):e1007679. Epub 2018 Sep 26.

Department of Medicine, Brigham and Women's Hospital, Boston, MA, United States of America.

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September 2018

Widespread Chromosomal Losses and Mitochondrial DNA Alterations as Genetic Drivers in Hürthle Cell Carcinoma.

Authors:
Raj K Gopal Kirsten Kübler Sarah E Calvo Paz Polak Dimitri Livitz Daniel Rosebrock Peter M Sadow Braidie Campbell Samuel E Donovan Salma Amin Benjamin J Gigliotti Zenon Grabarek Julian M Hess Chip Stewart Lior Z Braunstein Peter F Arndt Scott Mordecai Angela R Shih Frances Chaves Tiannan Zhan Carrie C Lubitz Jiwoong Kim A John Iafrate Lori Wirth Sareh Parangi Ignaty Leshchiner Gilbert H Daniels Vamsi K Mootha Dora Dias-Santagata Gad Getz David G McFadden

Cancer Cell 2018 08;34(2):242-255.e5

Department of Medicine, Massachusetts General Hospital, Boston, MA 02114, USA; Thyroid Unit, Massachusetts General Hospital, Boston, MA 02114, USA; Department of Internal Medicine, Division of Endocrinology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. Electronic address:

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August 2018

Author Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.

Authors:
Bjoern Chapuy Chip Stewart Andrew J Dunford Jaegil Kim Atanas Kamburov Robert A Redd Mike S Lawrence Margaretha G M Roemer Amy J Li Marita Ziepert Annette M Staiger Jeremiah A Wala Matthew D Ducar Ignaty Leshchiner Ester Rheinbay Amaro Taylor-Weiner Caroline A Coughlin Julian M Hess Chandra S Pedamallu Dimitri Livitz Daniel Rosebrock Mara Rosenberg Adam A Tracy Heike Horn Paul van Hummelen Andrew L Feldman Brian K Link Anne J Novak James R Cerhan Thomas M Habermann Reiner Siebert Andreas Rosenwald Aaron R Thorner Matthew L Meyerson Todd R Golub Rameen Beroukhim Gerald G Wulf German Ott Scott J Rodig Stefano Monti Donna S Neuberg Markus Loeffler Michael Pfreundschuh Lorenz Trümper Gad Getz Margaret A Shipp

Nat Med 2018 Aug;24(8):1290-1291

Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.

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August 2018

Publisher Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.

Authors:
Bjoern Chapuy Chip Stewart Andrew J Dunford Jaegil Kim Atanas Kamburov Robert A Redd Mike S Lawrence Margaretha G M Roemer Amy J Li Marita Ziepert Annette M Staiger Jeremiah A Wala Matthew D Ducar Ignaty Leshchiner Ester Rheinbay Amaro Taylor-Weiner Caroline A Coughlin Julian M Hess Chandra S Pedamallu Dimitri Livitz Daniel Rosebrock Mara Rosenberg Adam A Tracy Heike Horn Paul van Hummelen Andrew L Feldman Brian K Link Anne J Novak James R Cerhan Thomas M Habermann Reiner Siebert Andreas Rosenwald Aaron R Thorner Matthew L Meyerson Todd R Golub Rameen Beroukhim Gerald G Wulf German Ott Scott J Rodig Stefano Monti Donna S Neuberg Markus Loeffler Michael Pfreundschuh Lorenz Trümper Gad Getz Margaret A Shipp

Nat Med 2018 Aug;24(8):1292

Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.

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August 2018

Resolving the phylogenetic origin of glioblastoma via multifocal genomic analysis of pre-treatment and treatment-resistant autopsy specimens.

Authors:
Priscilla K Brastianos Naema Nayyar Daniel Rosebrock Ignaty Leshchiner Corey M Gill Dimitri Livitz Mia S Bertalan Megan D'Andrea Kaitlin Hoang Elisa Aquilanti Ugonma N Chukwueke Andrew Kaneb Andrew Chi Scott Plotkin Elizabeth R Gerstner Mathew P Frosch Mario L Suva Daniel P Cahill Gad Getz Tracy T Batchelor

NPJ Precis Oncol 2017 18;1(1):33. Epub 2017 Sep 18.

1Division of Hematology/Oncology, Massachusetts General Hospital, Boston, Massachusetts USA.

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September 2017

Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.

Authors:
Bjoern Chapuy Chip Stewart Andrew J Dunford Jaegil Kim Atanas Kamburov Robert A Redd Mike S Lawrence Margaretha G M Roemer Amy J Li Marita Ziepert Annette M Staiger Jeremiah A Wala Matthew D Ducar Ignaty Leshchiner Ester Rheinbay Amaro Taylor-Weiner Caroline A Coughlin Julian M Hess Chandra S Pedamallu Dimitri Livitz Daniel Rosebrock Mara Rosenberg Adam A Tracy Heike Horn Paul van Hummelen Andrew L Feldman Brian K Link Anne J Novak James R Cerhan Thomas M Habermann Reiner Siebert Andreas Rosenwald Aaron R Thorner Matthew L Meyerson Todd R Golub Rameen Beroukhim Gerald G Wulf German Ott Scott J Rodig Stefano Monti Donna S Neuberg Markus Loeffler Michael Pfreundschuh Lorenz Trümper Gad Getz Margaret A Shipp

Nat Med 2018 05 30;24(5):679-690. Epub 2018 Apr 30.

Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.

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May 2018

The evolutionary landscape of chronic lymphocytic leukemia treated with ibrutinib targeted therapy.

Authors:
Dan A Landau Clare Sun Daniel Rosebrock Sarah E M Herman Joshua Fein Mariela Sivina Chingiz Underbayev Delong Liu Julia Hoellenriegel Sarangan Ravichandran Mohammed Z H Farooqui Wandi Zhang Carrie Cibulskis Asaf Zviran Donna S Neuberg Dimitri Livitz Ivana Bozic Ignaty Leshchiner Gad Getz Jan A Burger Adrian Wiestner Catherine J Wu

Nat Commun 2017 12 19;8(1):2185. Epub 2017 Dec 19.

Broad Institute, Cambridge, MA, 02142, USA.

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December 2017

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors.

Authors:
Viktor A Adalsteinsson Gavin Ha Samuel S Freeman Atish D Choudhury Daniel G Stover Heather A Parsons Gregory Gydush Sarah C Reed Denisse Rotem Justin Rhoades Denis Loginov Dimitri Livitz Daniel Rosebrock Ignaty Leshchiner Jaegil Kim Chip Stewart Mara Rosenberg Joshua M Francis Cheng-Zhong Zhang Ofir Cohen Coyin Oh Huiming Ding Paz Polak Max Lloyd Sairah Mahmud Karla Helvie Margaret S Merrill Rebecca A Santiago Edward P O'Connor Seong H Jeong Rachel Leeson Rachel M Barry Joseph F Kramkowski Zhenwei Zhang Laura Polacek Jens G Lohr Molly Schleicher Emily Lipscomb Andrea Saltzman Nelly M Oliver Lori Marini Adrienne G Waks Lauren C Harshman Sara M Tolaney Eliezer M Van Allen Eric P Winer Nancy U Lin Mari Nakabayashi Mary-Ellen Taplin Cory M Johannessen Levi A Garraway Todd R Golub Jesse S Boehm Nikhil Wagle Gad Getz J Christopher Love Matthew Meyerson

Nat Commun 2017 11 6;8(1):1324. Epub 2017 Nov 6.

Eli and Edythe L. Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, 02142, MA, USA.

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November 2017

Resistance to checkpoint blockade therapy through inactivation of antigen presentation.

Authors:
Moshe Sade-Feldman Yunxin J Jiao Jonathan H Chen Michael S Rooney Michal Barzily-Rokni Jean-Pierre Eliane Stacey L Bjorgaard Marc R Hammond Hans Vitzthum Shauna M Blackmon Dennie T Frederick Mehlika Hazar-Rethinam Brandon A Nadres Emily E Van Seventer Sachet A Shukla Keren Yizhak John P Ray Daniel Rosebrock Dimitri Livitz Viktor Adalsteinsson Gad Getz Lyn M Duncan Bo Li Ryan B Corcoran Donald P Lawrence Anat Stemmer-Rachamimov Genevieve M Boland Dan A Landau Keith T Flaherty Ryan J Sullivan Nir Hacohen

Nat Commun 2017 10 26;8(1):1136. Epub 2017 Oct 26.

Department of Medicine, Massachusetts General Hospital Cancer Center, Boston, MA, 02114, USA.

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October 2017

A mutational signature reveals alterations underlying deficient homologous recombination repair in breast cancer.

Authors:
Paz Polak Jaegil Kim Lior Z Braunstein Rosa Karlic Nicholas J Haradhavala Grace Tiao Daniel Rosebrock Dimitri Livitz Kirsten Kübler Kent W Mouw Atanas Kamburov Yosef E Maruvka Ignaty Leshchiner Eric S Lander Todd R Golub Aviad Zick Alexandre Orthwein Michael S Lawrence Rajbir N Batra Carlos Caldas Daniel A Haber Peter W Laird Hui Shen Leif W Ellisen Alan D D'Andrea Stephen J Chanock William D Foulkes Gad Getz

Nat Genet 2017 Oct 21;49(10):1476-1486. Epub 2017 Aug 21.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

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October 2017

Two-dimensional gas chromatography/mass spectrometry, physical property modeling and automated production of component maps to assess the weathering of pollutants.

Authors:
Patrick M Antle Christian D Zeigler Dimitri G Livitz Albert Robbat

J Chromatogr A 2014 Oct 16;1364:223-33. Epub 2014 Aug 16.

Tufts University Department of Chemistry, United States. Electronic address:

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October 2014