Dilek Colak

Dilek Colak

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Dilek Colak

Publications by authors named "Dilek Colak"

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Evaluation of a nucleic acid amplification assay for the diagnosis of Clostridioides difficile infection.

Anaerobe 2019 Oct 27;59:201-204. Epub 2019 Jun 27.

Department of Clinical Microbiology, Akdeniz University Faculty of Medicine, Antalya, Turkey.

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http://dx.doi.org/10.1016/j.anaerobe.2019.06.015DOI Listing
October 2019

β1 Integrin is essential for fascin-mediated breast cancer stem cell function and disease progression.

Int J Cancer 2019 Aug 18;145(3):830-841. Epub 2019 Feb 18.

Stem Cell and Tissue Re-Engineering Program, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/ijc.32183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6593770PMC
August 2019

[Evaluation of the Two Different Real Time Polymerase Chain Reaction Methods Used for BK Virus (BKV) Quantification and BKV Genotype Assignment].

Mikrobiyol Bul 2019 Jul;53(3):285-296

Akdeniz University Faculty of Medicine, Department of Medical Microbiology, Antalya, Turkey.

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http://dx.doi.org/10.5578/mb.68059DOI Listing
July 2019

Biomolecular Databases and Subnetwork Identification Approaches of Interest to Big Data Community: An Expert Review.

OMICS 2019 Mar;23(3):138-151

1 Department of Biostatistics, Epidemiology, and Scientific Computing, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1089/omi.2018.0205DOI Listing
March 2019

Bi-allelic TMEM94 Truncating Variants Are Associated with Neurodevelopmental Delay, Congenital Heart Defects, and Distinct Facial Dysmorphism.

Am J Hum Genet 2018 12;103(6):948-967

Section of Human Biochemical Genetics, Medical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA; NIH Undiagnosed Diseases Program, NHGRI and the Common Fund, National Institutes of Health, Bethesda, MD 20892, USA; Office of the Clinical Director, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2018.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6288279PMC
December 2018

Deletion and Functional Analysis of Hepatitis B Virus X Protein: Evidence for an Effect on Cell Cycle Regulators.

Cell Physiol Biochem 2018 20;49(5):1987-1998. Epub 2018 Sep 20.

Department of Infection and Immunity, Research Center, King Faisal Specialist Hospital & Research Center, Riyadh, Saudi Arabia.

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https://www.karger.com/Article/FullText/493670
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http://dx.doi.org/10.1159/000493670DOI Listing
October 2018

High prevalence of deleterious BRCA1 and BRCA2 germline mutations in arab breast and ovarian cancer patients.

Breast Cancer Res Treat 2018 Apr 2;168(3):695-702. Epub 2018 Jan 2.

Department of Molecular Oncology, King Faisal Specialist Hospital and Research Center, PO Box: 3354, Riyadh, 11211, Saudi Arabia.

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http://dx.doi.org/10.1007/s10549-017-4635-4DOI Listing
April 2018

PD-L1 promotes OCT4 and Nanog expression in breast cancer stem cells by sustaining PI3K/AKT pathway activation.

Int J Cancer 2017 10 30;141(7):1402-1412. Epub 2017 Jun 30.

Stem Cell & Tissue Re-Engineering Program, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/ijc.30834DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5575465PMC
October 2017

GZF1 Mutations Expand the Genetic Heterogeneity of Larsen Syndrome.

Am J Hum Genet 2017 May;100(5):831-836

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia; Department of Anatomy and Cell Biology, College of Medicine, Alfaisal University, Riyadh 11533, Saudi Arabia; Saudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2017.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5420357PMC
May 2017

Integrated Genomic and Network-Based Analyses of Complex Diseases and Human Disease Network.

J Genet Genomics 2016 06 15;43(6):349-67. Epub 2015 Dec 15.

Department of Biostatistics, Epidemiology and Scientific Computing, King Faisal Specialist Hospital and Research Centre, Riyadh 11211, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2015.11.002DOI Listing
June 2016

Mutations in SMG9, Encoding an Essential Component of Nonsense-Mediated Decay Machinery, Cause a Multiple Congenital Anomaly Syndrome in Humans and Mice.

Am J Hum Genet 2016 Apr 24;98(4):643-52. Epub 2016 Mar 24.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia; Department of Anatomy and Cell Biology, College of Medicine, Alfaisal University, Riyadh 11533, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.02.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833216PMC
April 2016

Analysis of human herpes virus 6 infections with a quantitative, standardized, commercial kit in pediatric stem cell transplant recipients after transplantation.

Ann Saudi Med 2014 Jan-Feb;34(1):6-11

Dilek Colak, Akdeniz University, Faculty of Medicine,, Medical Microbiology Department, Dumlupinar Blv. Antalya Turkey 07070, T: +902422496911, F: +902422262823,

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http://www.annsaudimed.net/index.php/vol34/vol34iss1/672.htm
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http://dx.doi.org/10.5144/0256-4947.2014.6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6074933PMC
August 2015

Bidirectional crosstalk between PD-L1 expression and epithelial to mesenchymal transition: significance in claudin-low breast cancer cells.

Mol Cancer 2015 Aug 7;14:149. Epub 2015 Aug 7.

Stem Cell & Tissue Re-engineering Program, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1186/s12943-015-0421-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4527106PMC
August 2015

A novel APC mutation defines a second locus for Cenani-Lenz syndrome.

J Med Genet 2015 May 12;52(5):317-21. Epub 2015 Feb 12.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia Department of Anatomy and Cell Biology, College of Medicine, Alfaisal University, Riyadh, Saudi Arabia.

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http://jmg.bmj.com/content/early/2015/02/12/jmedgenet-2014-1
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http://dx.doi.org/10.1136/jmedgenet-2014-102850DOI Listing
May 2015

Genetics of autism spectrum disorder: an update on copy number variations leading to autism in the next generation sequencing era.

Discov Med 2015 May;19(106):367-79

Department of Genetics and Department of Pathology and Laboratory Medicine, King Faisal Specialist Hospital and Research Centre, Riyadh, 11211, Saudi Arabia.

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May 2015

Coupled local translation and degradation regulate growth cone collapse.

Nat Commun 2015 Apr 22;6:6888. Epub 2015 Apr 22.

1] Graduate Program in Neuroscience, Weill Cornell Graduate School of Medical Sciences of Cornell University, 1300 York Avenue, New York, New York 10065, USA [2] Department of Pharmacology, Weill Medical College, Cornell University, 1300 York Avenue, New York, New York 10065, USA.

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http://dx.doi.org/10.1038/ncomms7888DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408908PMC
April 2015

ISCA2 mutation causes infantile neurodegenerative mitochondrial disorder.

J Med Genet 2015 Mar 24;52(3):186-94. Epub 2014 Dec 24.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia Department of Biostatistics and Scientific Computing, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1136/jmedgenet-2014-102592DOI Listing
March 2015

Novel homozygous DEAF1 variant suspected in causing white matter disease, intellectual disability, and microcephaly.

Am J Med Genet A 2014 Jun 25;164A(6):1565-70. Epub 2014 Mar 25.

Section of Medical Genetic, Pediatric Department, Children's Hospital, King Fahad Medical City, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/ajmg.a.36482DOI Listing
June 2014

Promoter-bound trinucleotide repeat mRNA drives epigenetic silencing in fragile X syndrome.

Science 2014 Feb;343(6174):1002-5

Department of Pharmacology, Weill Cornell Medical College, Cornell University, New York, NY 10065, USA.

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http://dx.doi.org/10.1126/science.1245831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357282PMC
February 2014

The DNA replication program is altered at the FMR1 locus in fragile X embryonic stem cells.

Mol Cell 2014 Jan 27;53(1):19-31. Epub 2013 Nov 27.

Department of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2013.10.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3920742PMC
January 2014

[Investigation of hepatitis B and hepatitis C virus infections by serological and molecular methods in hemodialysis patients].

Mikrobiyol Bul 2014 Jan;48(1):143-50

Akdeniz University Faculty of Medicine, Department of Medical Microbiology, Antalya, Turkey.

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January 2014

Breast stromal fibroblasts from histologically normal surgical margins are pro-carcinogenic.

J Pathol 2013 Dec;231(4):457-65

Department of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/path.4256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284036PMC
December 2013

Prevalence of PIK3CA mutations and the SNP rs17849079 in Arab breast cancer patients.

Cancer Biol Ther 2013 Oct 12;14(10):888-96. Epub 2013 Aug 12.

Department of Molecular Oncology; King Faisal Specialist Hospital and Research Center; Riyadh, Saudi Arabia.

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http://dx.doi.org/10.4161/cbt.25945DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3926885PMC
October 2013

A novel mutation in a large family causes a unique phenotype of Mucolipidosis IV.

Gene 2013 Sep 15;526(2):464-6. Epub 2013 May 15.

Department of Genetics, King Faisal Specialist Hospital and Research Center, MBC 03, Riyadh 11211, Saudi Arabia.

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https://linkinghub.elsevier.com/retrieve/pii/S03781119130057
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http://dx.doi.org/10.1016/j.gene.2013.04.076DOI Listing
September 2013

[BK virus infections in pediatric kidney transplant recipients].

Mikrobiyol Bul 2013 Jul;47(3):461-71

Akdeniz University Medical School Hospital, Department of Medical Microbiology, Antalya, Turkey.

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July 2013

Induction of cell proliferation in old rat liver can reset certain gene expression levels characteristic of old liver to those associated with young liver.

Age (Dordr) 2013 Jun 4;35(3):719-32. Epub 2012 Apr 4.

Department of Comparative Medicine, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia, 11211.

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http://dx.doi.org/10.1007/s11357-012-9404-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3636416PMC
June 2013

Mutation in PHC1 implicates chromatin remodeling in primary microcephaly pathogenesis.

Hum Mol Genet 2013 Jun 14;22(11):2200-13. Epub 2013 Feb 14.

Department of Genetics, Developmental Genetics Unit.

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http://dx.doi.org/10.1093/hmg/ddt072DOI Listing
June 2013

Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay.

Cell 2013 Jun;153(6):1252-65

Department of Pharmacology, Weill Medical College, Cornell University, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.cell.2013.04.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3685487PMC
June 2013

[Investigation of adenoviruses in children with lower respiratory tract infections].

Mikrobiyol Bul 2013 Apr;47(2):282-94

Department of Medical Microbiology, Akdeniz University Faculty of Medicine, Antalya, Turkey.

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April 2013

Identification of a novel IVD mutation in a consanguineous family with isovaleric acidemia.

Gene 2013 Jan 9;513(2):297-300. Epub 2012 Oct 9.

Department of Genetics, King Faisal Specialist Hospital and Research Centre, Saudi Arabia.

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http://dx.doi.org/10.1016/j.gene.2012.09.097DOI Listing
January 2013

Genome-wide expression profiling of patients with primary open angle glaucoma.

Invest Ophthalmol Vis Sci 2012 Aug 27;53(9):5899-904. Epub 2012 Aug 27.

Department of Biostatistics Epidemiology and Scientific Computing, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1167/iovs.12-9634DOI Listing
August 2012

Distribution and antifungal susceptibility of Candida species causing nosocomial candiduria.

Med Mycol 2012 Jul 11;50(5):529-32. Epub 2011 Oct 11.

Department of Medical Microbiology, Akdeniz University Medical Faculty, Antalya, Turkey.

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http://dx.doi.org/10.3109/13693786.2011.618996DOI Listing
July 2012

The impact of hepatitis C virus infection on long-term outcome in renal transplant patients.

Turk J Gastroenterol 2011 ;22(2):165-70

Department of Internal Medicine, Akdeniz University, School of Medicine, Antalya, Turkey.

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http://dx.doi.org/10.4318/tjg.2011.0236DOI Listing
December 2011

A novel interstitial microdeletion of 7q22.1-7q22.3 detected by array comparative genomic hybridization.

Am J Med Genet A 2011 Dec 14;155A(12):3128-31. Epub 2011 Oct 14.

Department of Medical Genetics, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/ajmg.a.34298DOI Listing
December 2011

GM2 gangliosidosis in Saudi Arabia: multiple mutations and considerations for future carrier screening.

Am J Med Genet A 2011 Jun 12;155A(6):1281-4. Epub 2011 May 12.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/ajmg.a.33932DOI Listing
June 2011

ICF syndrome in Saudi Arabia: immunological, cytogenetic and molecular analysis.

J Clin Immunol 2011 Apr 1;31(2):245-52. Epub 2010 Dec 1.

Department of Genetics, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://link.springer.com/10.1007/s10875-010-9488-0
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http://dx.doi.org/10.1007/s10875-010-9488-0DOI Listing
April 2011

Likelihood inference on the relative risk in split-cluster designs.

Clin Trials 2011 Feb;8(1):37-47

Department of Epidemiology and Biostatistics, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Ontario, Canada.

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http://dx.doi.org/10.1177/1740774510392254DOI Listing
February 2011

[Investigation of Panton-Valentine leukocidin gene, SCCmec gene cassette types and genotypes of methicillin-resistant Staphylococcus aureus strains isolated from outpatients].

Mikrobiyol Bul 2010 Oct;44(4):533-45

Ardahan Devlet Hastanesi, Mikrobiyoloji ve Klinik Mikrobiyoloji Laboratuvarı, Ardahan, Türkiye.

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October 2010

Novel CENPJ mutation causes Seckel syndrome.

J Med Genet 2010 Jun;47(6):411-4

Developmental Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Center, MBC 03, PO Box 3354, Riyadh 11211, Saudi Arabia.

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http://jmg.bmj.com/cgi/doi/10.1136/jmg.2009.076646
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http://dx.doi.org/10.1136/jmg.2009.076646DOI Listing
June 2010

The specific role of histone deacetylase 2 in adult neurogenesis.

Neuron Glia Biol 2010 May 14;6(2):93-107. Epub 2010 Apr 14.

Institute for Stem Cell Research, HelmholtzZentrum Munich, German Research Center for Environmental Health, Neuherberg/Munich, Germany.

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http://dx.doi.org/10.1017/S1740925X10000049DOI Listing
May 2010

Left ventricular global transcriptional profiling in human end-stage dilated cardiomyopathy.

Genomics 2009 Jul 28;94(1):20-31. Epub 2009 Mar 28.

Department of Biostatistics, Epidemiology and Scientific Computing, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1016/j.ygeno.2009.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4152850PMC
July 2009

[Evaluation of tuberculin reactivity in different age groups with and without BCG vaccination].

Mikrobiyol Bul 2009 Jan;43(1):27-35

Akdeniz Universitesi Tip Fakültesi, Tibbi Mikrobiyoloji Anabilim Dali, Antalya.

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January 2009

Nosocomial outbreak of vancomycin-resistant Enterococcus faecium in a paediatric unit at a Turkish university hospital.

J Antimicrob Chemother 2008 May 4;61(5):1033-9. Epub 2008 Mar 4.

Medical Microbiology Department, Akdeniz University School of Medicine, Antalya, Turkey.

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http://dx.doi.org/10.1093/jac/dkn066DOI Listing
May 2008

Comparison of two dependent within subject coefficients of variation to evaluate the reproducibility of measurement devices.

BMC Med Res Methodol 2008 Apr 22;8:24. Epub 2008 Apr 22.

Department of Epidemiology and Biostatistics, Schulich School of Medicine, University of Western Ontario, London, Ontario, Canada.

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http://dx.doi.org/10.1186/1471-2288-8-24DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2383920PMC
April 2008

Origin and progeny of reactive gliosis: A source of multipotent cells in the injured brain.

Proc Natl Acad Sci U S A 2008 Mar 25;105(9):3581-6. Epub 2008 Feb 25.

Institute for Stem Cell Research, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstädter Landstrasse 1, 85764 Neuherberg/Munich, Germany.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0709002105
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http://dx.doi.org/10.1073/pnas.0709002105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2265175PMC
March 2008

[Investigation of cytomegalovirus seroepidemiology in Antalya with a population-based cross-sectional study and review of related data in Turkey].

Mikrobiyol Bul 2007 Oct;41(4):545-55

Akdeniz Universitesi Tip Fakültesi, Tibbi Mikrobiyoloji Anabilim Dali, Antalya.

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October 2007

CMV seroconversion in pregnants and the incidence of congenital CMV infection.

Turk J Pediatr 2007 Jan-Mar;49(1):30-6

Department of Pediatrics, Akdeniz University Faculty of Medicine, Antalya, Turkey.

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May 2007

Evaluation of the ICT Tuberculosis test for the routine diagnosis of tuberculosis.

BMC Infect Dis 2006 Feb 27;6:37. Epub 2006 Feb 27.

Department of Medical Microbiology, Akdeniz University, Faculty of Medicine, Antalya, Turkey.

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http://dx.doi.org/10.1186/1471-2334-6-37DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1402301PMC
February 2006

Bacteremia caused by Brevibacterium species in a patient with chronic lymphocytic leukemia.

Haematologia (Budap) 2002 ;32(2):151-3

Department of Microbiology and Clinical Microbiology, Akdeniz University School of Medicine, Antalya, Turkey.

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June 2003

Evaluation of a Western blot technique (Helicoblot 2.1) for the diagnosis of Helicobacter pylori infection in children.

Pathology 2003 Apr;35(2):157-60

Department of Microbiology and Clinical Microbiology, Akdeniz University School of Medicine, 07070 Antalya, Turkey.

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http://dx.doi.org/10.1080/00313020307579DOI Listing
April 2003

A hospital outbreak of aseptic meningitis due to echovirus type 30 in Antalya, Turkey.

Turk J Pediatr 2002 Jul-Sep;44(3):237-9

Department of Pediatrics, Akdeniz University, Faculty of Medicine, Antalya, Turkey.

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November 2002

First outbreak of vancomycin-resistant enterococci in a tertiary hospital in Turkey.

J Antimicrob Chemother 2002 Sep;50(3):397-401

Clinical Microbiology Department, Akdeniz University School of Medicine, Antalya, Turkey.

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http://dx.doi.org/10.1093/jac/dkf134DOI Listing
September 2002