Deyou Zheng

Deyou Zheng

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Deyou Zheng

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Non-catalytic Roles of Tet2 Are Essential to Regulate Hematopoietic Stem and Progenitor Cell Homeostasis.

Cell Rep 2019 Sep;28(10):2480-2490.e4

Ruth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Research, Albert Einstein College of Medicine, 1301 Morris Park Ave., Bronx, NY 10461, USA; Department of Cell Biology, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY 10461, USA; Department of Medicine (Hemato-Oncology), Montefiore Medical Center, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY 10461, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.07.094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6750732PMC
September 2019

Spatiotemporal Gene Coexpression and Regulation in Mouse Cardiomyocytes of Early Cardiac Morphogenesis.

J Am Heart Assoc 2019 Aug 19;8(15):e012941. Epub 2019 Jul 19.

Department of Genetics Albert Einstein College of Medicine Bronx NY.

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http://dx.doi.org/10.1161/JAHA.119.012941DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761639PMC
August 2019

Rinf Regulates Pluripotency Network Genes and Tet Enzymes in Embryonic Stem Cells.

Cell Rep 2019 Aug;28(8):1993-2003.e5

Ruth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Research, Albert Einstein College of Medicine, 1301 Morris Park Ave., Bronx, NY 10461, USA; Department of Genetics, Albert Einstein College of Medicine, 1301 Morris Park Ave., Bronx, NY 10461, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.07.080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6716522PMC
August 2019

Polycomb Repressive Complex 1 Controls Maintenance of Fungiform Papillae by Repressing Sonic Hedgehog Expression.

Cell Rep 2019 Jul;28(1):257-266.e5

Black Family Stem Cell Institute, The Tisch Cancer Institute, Department of Cell, Developmental, and Regenerative Biology, Icahn School of Medicine at Mount Sinai, 1 Gustave L. Levy Place, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.06.011DOI Listing
July 2019

Profiling of chromatin accessibility and identification of general cis-regulatory mechanisms that control two ocular lens differentiation pathways.

Epigenetics Chromatin 2019 May 3;12(1):27. Epub 2019 May 3.

The Departments of Genetics, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.

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http://dx.doi.org/10.1186/s13072-019-0272-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6498704PMC
May 2019

Dissection of Merkel cell formation in hairy and glabrous skin reveals a common requirement for FGFR2-mediated signalling.

Exp Dermatol 2019 Apr 13;28(4):374-382. Epub 2019 Mar 13.

Department of Cell, Developmental, and Regenerative Biology, Black Family Stem Cell Institute, The Tisch Cancer Institute, New York City, New York.

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http://dx.doi.org/10.1111/exd.13901DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488392PMC
April 2019

Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers.

Exp Eye Res 2019 02 22;179:32-46. Epub 2018 Oct 22.

Departments Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, NY, 10461, USA; Genetics, Albert Einstein College of Medicine, Bronx, NY, 10461, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00144835183031
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http://dx.doi.org/10.1016/j.exer.2018.10.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6360118PMC
February 2019

PRC1 preserves epidermal tissue integrity independently of PRC2.

Genes Dev 2019 01 19;33(1-2):55-60. Epub 2018 Dec 19.

Black Family Stem Cell Institute, Department of Cell, Developmental, and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA.

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http://genesdev.cshlp.org/lookup/doi/10.1101/gad.319939.118
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http://dx.doi.org/10.1101/gad.319939.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6317312PMC
January 2019

Bidirectional Analysis of Cryba4-Crybb1 Nascent Transcription and Nuclear Accumulation of Crybb3 mRNAs in Lens Fibers.

Invest Ophthalmol Vis Sci 2019 01;60(1):234-244

Departments of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States.

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http://dx.doi.org/10.1167/iovs.18-25921DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336207PMC
January 2019

SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis.

BMC Bioinformatics 2018 Dec 27;19(1):544. Epub 2018 Dec 27.

Department of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, New York, USA.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2577-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6307164PMC
December 2018

Metabolite differences between glutamate carboxypeptidase II gene knockout mice and their wild-type littermates after traumatic brain injury: a 7-tesla H-MRS study.

BMC Neurosci 2018 Nov 20;19(1):75. Epub 2018 Nov 20.

Department of Neurosurgery, Shanghai East Hospital, Tongji University School of Medicine, 150 Jimo Road, Shanghai, 200120, China.

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http://dx.doi.org/10.1186/s12868-018-0473-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245916PMC
November 2018

Six3 and Six6 Are Jointly Required for the Maintenance of Multipotent Retinal Progenitors through Both Positive and Negative Regulation.

Cell Rep 2018 11;25(9):2510-2523.e4

Departments of Ophthalmology and Visual Sciences and Genetics, Albert Einstein College of Medicine, New York, NY 10461, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.10.106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6317371PMC
November 2018

A comprehensive spatial-temporal transcriptomic analysis of differentiating nascent mouse lens epithelial and fiber cells.

Exp Eye Res 2018 10 5;175:56-72. Epub 2018 Jun 5.

Department of Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA. Electronic address:

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http://dx.doi.org/10.1016/j.exer.2018.06.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6167154PMC
October 2018

ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer.

Mol Cell 2018 10 27;72(2):341-354.e6. Epub 2018 Sep 27.

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2018.08.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214474PMC
October 2018

PRC1 Fine-tunes Gene Repression and Activation to Safeguard Skin Development and Stem Cell Specification.

Cell Stem Cell 2018 05;22(5):726-739.e7

Black Family Stem Cell Institute, Department of Cell, Developmental, and Regenerative Biology, Icahn School of Medicine at Mount Sinai, 1 Gustave L. Levy Place, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2018.04.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944606PMC
May 2018

Temporal Layering of Signaling Effectors Drives Chromatin Remodeling during Hair Follicle Stem Cell Lineage Progression.

Cell Stem Cell 2018 03 11;22(3):398-413.e7. Epub 2018 Jan 11.

Robin Neustein Laboratory of Mammalian Development and Cell Biology, Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stem.2017.12.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6425486PMC
March 2018

The Chromatin Remodeler BPTF Activates a Stemness Gene-Expression Program Essential for the Maintenance of Adult Hematopoietic Stem Cells.

Stem Cell Reports 2018 03 15;10(3):675-683. Epub 2018 Feb 15.

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22136711183004
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http://dx.doi.org/10.1016/j.stemcr.2018.01.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5918338PMC
March 2018

Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons.

Transl Psychiatry 2018 01 10;8(1):13. Epub 2018 Jan 10.

Department of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA.

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http://dx.doi.org/10.1038/s41398-017-0058-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802446PMC
January 2018

Author Correction: REST regulates the cell cycle for cardiac development and regeneration.

Nat Commun 2018 01 12;9(1):167. Epub 2018 Jan 12.

Departments of Genetics, Pediatrics, and Medicine (Cardiology), The Wilf Cardiovascular Research Institute, The Institute for Aging Research, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.

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http://dx.doi.org/10.1038/s41467-017-02617-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5766539PMC
January 2018

Aberrant Activation of a Gastrointestinal Transcriptional Circuit in Prostate Cancer Mediates Castration Resistance.

Cancer Cell 2017 Dec 16;32(6):792-806.e7. Epub 2017 Nov 16.

Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Department of Medicine, Division of Hematology and Medical Oncology, Weill Cornell Medicine, New York, NY 10065, USA; Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2017.10.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5728174PMC
December 2017

REST regulates the cell cycle for cardiac development and regeneration.

Nat Commun 2017 12 7;8(1):1979. Epub 2017 Dec 7.

Departments of Genetics, Pediatrics, and Medicine (Cardiology), The Wilf Cardiovascular Research Institute, The Institute for Aging Research, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.

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http://dx.doi.org/10.1038/s41467-017-02210-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5719406PMC
December 2017

Characteristics of allelic gene expression in human brain cells from single-cell RNA-seq data analysis.

BMC Genomics 2017 Nov 10;18(1):860. Epub 2017 Nov 10.

Department of Neurology, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA.

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http://dx.doi.org/10.1186/s12864-017-4261-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5681780PMC
November 2017

N-myc regulates growth and fiber cell differentiation in lens development.

Dev Biol 2017 09 14;429(1):105-117. Epub 2017 Jul 14.

Programa de Biologia Celular e do Desenvolvimento, Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2017.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5586101PMC
September 2017

Evolutionary Origins of Pax6 Control of Crystallin Genes.

Genome Biol Evol 2017 08;9(8):2075-2092

Department of Genetics, Albert Einstein College of Medicine, Bronx, New York.

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http://dx.doi.org/10.1093/gbe/evx153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737492PMC
August 2017

Non-CpG methylation by DNMT3B facilitates REST binding and gene silencing in developing mouse hearts.

Nucleic Acids Res 2017 04;45(6):3102-3115

Departments of Genetics, Pediatrics, and Medicine (Cardiology), Wilf Cardiovascular Research Institute, Albert Einstein College of Medicine, Bronx, NY 10461, USA.

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http://dx.doi.org/10.1093/nar/gkw1258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389556PMC
April 2017

PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs.

Cell Stem Cell 2017 02 8;20(2):274-289.e7. Epub 2016 Dec 8.

Key Laboratory of Stem Cell Biology, CAS Center for Excellence in Molecular Cell Science, Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences/Shanghai JiaoTong University School of Medicine, 320 Yueyang Road, Shanghai 200032, China; Department of Molecular Developmental Biology, Institute of Medical Sciences, Shanghai JiaoTong University School of Medicine, 225 South Chongqing Road, Shanghai 200025, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19345909163039
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http://dx.doi.org/10.1016/j.stem.2016.11.002DOI Listing
February 2017

Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses.

Sci Rep 2017 02 17;7:42646. Epub 2017 Feb 17.

Department of Dermatology, Columbia University, New York, NY, USA.

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http://dx.doi.org/10.1038/srep42646DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5314319PMC
February 2017

MYOSLID Is a Novel Serum Response Factor-Dependent Long Noncoding RNA That Amplifies the Vascular Smooth Muscle Differentiation Program.

Arterioscler Thromb Vasc Biol 2016 10 21;36(10):2088-99. Epub 2016 Jul 21.

From the Department of Molecular and Cellular Physiology (J.Z., W.Z., W.W., E.T., M.X., A.R., D.J., H.A.S., X.L.), Albany Medical College, NY; Department of Medicine, Jersey Shore University Medical Center, Neptune, NJ (A.A.); Departments of Genetics (M.L., D.Z.) and Neurology and Neuroscience (D.Z.), Albert Einstein College of Medicine, Bronx, NY; Aab Cardiovascular Research Institute, University of Rochester School of Medicine and Dentistry, NY (P.J., J.M.M.); and National Aquafeed Safety Assessment Center, Feed Research Institute, Chinese Academy of Agricultural Sciences, Beijing, P.R. China (M.X.).

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http://dx.doi.org/10.1161/ATVBAHA.116.307879DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5033703PMC
October 2016

RNA-seq Identification of RACGAP1 as a Metastatic Driver in Uterine Carcinosarcoma.

Clin Cancer Res 2016 Sep 27;22(18):4676-86. Epub 2016 Apr 27.

Division of Gynecologic Oncology, Department of Obstetrics and Gynecology, Albert Einstein College of Medicine and Montefiore Medical Center, Bronx, New York. Albert Einstein Cancer Center, Albert Einstein College of Medicine, Bronx, New York. Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York.

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http://dx.doi.org/10.1158/1078-0432.CCR-15-2116DOI Listing
September 2016

Pax6 associates with H3K4-specific histone methyltransferases Mll1, Mll2, and Set1a and regulates H3K4 methylation at promoters and enhancers.

Epigenetics Chromatin 2016 9;9(1):37. Epub 2016 Sep 9.

Department of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461 USA ; Department of Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, NY 10461 USA.

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http://dx.doi.org/10.1186/s13072-016-0087-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018195PMC
September 2016

Divergence and rewiring of regulatory networks for neural development between human and other species.

Neurogenesis (Austin) 2016 19;3(1):e1231495. Epub 2016 Sep 19.

Department of Neurology, Albert Einstein College of Medicine, Bronx, New York, NY, USA; Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, NY, USA; Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, NY, USA.

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https://www.tandfonline.com/doi/full/10.1080/23262133.2016.1
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http://dx.doi.org/10.1080/23262133.2016.1231495DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111580PMC
September 2016

Epigenetic Perturbations by Arg882-Mutated DNMT3A Potentiate Aberrant Stem Cell Gene-Expression Program and Acute Leukemia Development.

Cancer Cell 2016 07 23;30(1):92-107. Epub 2016 Jun 23.

Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA; Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA; Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2016.05.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4945461PMC
July 2016

Polycomb-Mediated Repression and Sonic Hedgehog Signaling Interact to Regulate Merkel Cell Specification during Skin Development.

PLoS Genet 2016 07 14;12(7):e1006151. Epub 2016 Jul 14.

Department of Developmental and Regenerative Biology, Black Family Stem Cell Institute, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4944976PMC
July 2016

Transcriptomics analysis of iPSC-derived neurons and modeling of neuropsychiatric disorders.

Mol Cell Neurosci 2016 06 26;73:32-42. Epub 2015 Nov 26.

Department of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA; Department of Neuroscience, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA; Department of Neurology, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.mcn.2015.11.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4867250PMC
June 2016

MicroRNA Profiling of Neurons Generated Using Induced Pluripotent Stem Cells Derived from Patients with Schizophrenia and Schizoaffective Disorder, and 22q11.2 Del.

PLoS One 2015 14;10(7):e0132387. Epub 2015 Jul 14.

Department of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Neuroscience, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America; Department of Medicine, Albert Einstein College of Medicine, 1300 Morris Park Ave., Bronx, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132387PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501820PMC
May 2016

Chromatin features, RNA polymerase II and the comparative expression of lens genes encoding crystallins, transcription factors, and autophagy mediators.

Mol Vis 2015 28;21:955-73. Epub 2015 Aug 28.

Department of Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, NY ; Department of Genetics, Albert Einstein College of Medicine, Bronx, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551281PMC
May 2016

ZNF804A Transcriptional Networks in Differentiating Neurons Derived from Induced Pluripotent Stem Cells of Human Origin.

PLoS One 2015 23;10(4):e0124597. Epub 2015 Apr 23.

Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America; Dominick Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Medicine, Albert Einstein College of Medicine, Bronx, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0124597PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408091PMC
January 2016

Comprehensive transcriptional landscape of aging mouse liver.

BMC Genomics 2015 Nov 5;16:899. Epub 2015 Nov 5.

Department of Genetics, Albert Einstein College of Medicine, Bronx, NY, USA.

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http://dx.doi.org/10.1186/s12864-015-2061-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636074PMC
November 2015

ETS family transcriptional regulators drive chromatin dynamics and malignancy in squamous cell carcinomas.

Elife 2015 Nov 21;4:e10870. Epub 2015 Nov 21.

Howard Hughes Medical Institute, Robin Chemers Neustein Laboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, United States.

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http://dx.doi.org/10.7554/eLife.10870DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4739765PMC
November 2015

CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment.

Mol Autism 2015 19;6:55. Epub 2015 Oct 19.

Department of Neurology, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY 10461 USA ; Department of Genetics, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY 10461 USA ; Department of Neuroscience, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY 10461 USA.

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http://dx.doi.org/10.1186/s13229-015-0048-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4612430PMC
October 2015

Identification of in vivo DNA-binding mechanisms of Pax6 and reconstruction of Pax6-dependent gene regulatory networks during forebrain and lens development.

Nucleic Acids Res 2015 Aug 2;43(14):6827-46. Epub 2015 Jul 2.

The Departments of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, NY 10461, USA

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http://dx.doi.org/10.1093/nar/gkv589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4538810PMC
August 2015

Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural development.

Nucleic Acids Res 2015 Jul 18;43(12):5730-43. Epub 2015 May 18.

Department of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA Department of Neurology, Albert Einstein College of Medicine, Bronx, NY 10461, USA Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA

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http://dx.doi.org/10.1093/nar/gkv514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4499139PMC
July 2015

Mammalian TBX1 preferentially binds and regulates downstream targets via a tandem T-site repeat.

PLoS One 2014 5;9(5):e95151. Epub 2014 May 5.

Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0095151PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4010391PMC
June 2015

Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice.

Nature 2015 May 18;521(7552):366-70. Epub 2015 Mar 18.

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology &Development, The Rockefeller University, New York, New York 10065, USA.

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http://dx.doi.org/10.1038/nature14289DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482136PMC
May 2015

Characterization of human pseudogene-derived non-coding RNAs for functional potential.

PLoS One 2014 3;9(4):e93972. Epub 2014 Apr 3.

The Saul R. Korey Department of Neurology, Albert Einstein College of Medicine, New York, New York, United States of America; Department of Genetics, Albert Einstein College of Medicine, New York, New York, United States of America; Department of Neuroscience, Albert Einstein College of Medicine, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093972PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974860PMC
January 2015

Heat shock alters the expression of schizophrenia and autism candidate genes in an induced pluripotent stem cell model of the human telencephalon.

PLoS One 2014 15;9(4):e94968. Epub 2014 Apr 15.

Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York, United States of America; Dominick Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, United States of America; Department of Medicine, Albert Einstein College of Medicine, Bronx, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0094968PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3988108PMC
January 2015

PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors.

Nat Genet 2014 Nov 21;46(11):1227-32. Epub 2014 Sep 21.

1] Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [3] Department of Medicine, Weill Cornell Medical College, New York, New York, USA.

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http://dx.doi.org/10.1038/ng.3095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249650PMC
November 2014

Tbx1 is required autonomously for cell survival and fate in the pharyngeal core mesoderm to form the muscles of mastication.

Hum Mol Genet 2014 Aug 4;23(16):4215-31. Epub 2014 Apr 4.

Department of Genetics, Albert Einstein College of Medicine, 1301 Morris Park Avenue, Bronx, NY 10461, USA,

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http://dx.doi.org/10.1093/hmg/ddu140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103673PMC
August 2014

Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA.

Arterioscler Thromb Vasc Biol 2014 Jun 27;34(6):1249-59. Epub 2014 Feb 27.

From the Aab Cardiovascular Research Institute, University of Rochester School of Medicine and Dentistry, Rochester, NY (R.D.B., X.L., V.N., S.L.C., Q.Z., Y.H., J.M.M.); Department of Genetics (M.L., D.Z.) and Departments of Neurology and Neuroscience (D.Z.), Albert Einstein College of Medicine, Bronx, NY; and Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (J.H.B., D.L.S.).

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http://dx.doi.org/10.1161/ATVBAHA.114.303240DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4024079PMC
June 2014

Comparison of REST cistromes across human cell types reveals common and context-specific functions.

PLoS Comput Biol 2014 Jun 12;10(6):e1003671. Epub 2014 Jun 12.

Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America; Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America; The Saul R. Korey Department of Neurology, Albert Einstein College of Medicine, Bronx, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003671DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4055426PMC
June 2014

DNA methylation is developmentally regulated for genes essential for cardiogenesis.

J Am Heart Assoc 2014 Jun 19;3(3):e000976. Epub 2014 Jun 19.

Division of Cardiology, Departments of Medicine, Pediatrics, and Genetics, and Wilf Family Cardiovascular Research Institute, Albert Einstein College of Medicine of Yeshiva University, Bronx, NY (B.Z.) Department of Cardiology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China (B.Z.).

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http://dx.doi.org/10.1161/JAHA.114.000976DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4309105PMC
June 2014

In vivo transcriptional governance of hair follicle stem cells by canonical Wnt regulators.

Nat Cell Biol 2014 Feb 26;16(2):179-90. Epub 2014 Jan 26.

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology and Development, The Rockefeller UniversityNew York New York 10065 USA.

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http://dx.doi.org/10.1038/ncb2903DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984009PMC
February 2014

SOX9: a stem cell transcriptional regulator of secreted niche signaling factors.

Genes Dev 2014 Feb;28(4):328-41

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, New York 10065, USA;

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http://dx.doi.org/10.1101/gad.233247.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3937512PMC
February 2014

Nfatc1 orchestrates aging in hair follicle stem cells.

Proc Natl Acad Sci U S A 2013 Dec 26;110(51):E4950-9. Epub 2013 Nov 26.

Laboratory of Mammalian Cell Biology and Development and Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065.

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http://dx.doi.org/10.1073/pnas.1320301110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3870727PMC
December 2013

Glucocorticoid receptor confers resistance to antiandrogens by bypassing androgen receptor blockade.

Cell 2013 Dec;155(6):1309-22

Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Department of Medicine, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.cell.2013.11.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3932525PMC
December 2013

Androgen receptor signaling regulates DNA repair in prostate cancers.

Cancer Discov 2013 Nov 11;3(11):1245-53. Epub 2013 Sep 11.

1Human Oncology Pathogenesis Program, 2Developmental Biology Program, and 3Immunology Program; Departments of 4Radiation Oncology, 5Medicine, 6Surgery, and 7Pathology; 8Molecular Cytology Core Facility, Memorial Sloan-Kettering Cancer Center; 9Department of Genetics, Albert Einstein College of Medicine, New York, New York; 10Department of Genetics; and 11Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina.

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http://dx.doi.org/10.1158/2159-8290.CD-13-0172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3888815PMC
November 2013

The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress.

Mol Cell Biol 2013 Oct 22;33(19):3735-48. Epub 2013 Jul 22.

Laboratory of Chromatin Biology & Epigenetics, The Rockefeller University, New York, New York, USA.

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http://dx.doi.org/10.1128/MCB.00025-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811877PMC
October 2013

Architectural niche organization by LHX2 is linked to hair follicle stem cell function.

Cell Stem Cell 2013 Sep;13(3):314-27

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology and Development, The Rockefeller University, New York, NY 10065, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S19345909130030
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http://dx.doi.org/10.1016/j.stem.2013.06.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3856689PMC
September 2013

Allele-biased expression in differentiating human neurons: implications for neuropsychiatric disorders.

PLoS One 2012 30;7(8):e44017. Epub 2012 Aug 30.

Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0044017PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431331PMC
February 2013

An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting.

Mol Cell 2013 Feb 27;49(3):571-82. Epub 2012 Dec 27.

UNC Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1016/j.molcel.2012.11.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570589PMC
February 2013

Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells.

J Neurogenet 2011 Oct 29;25(3):88-103. Epub 2011 Jul 29.

Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, New York 10416, USA.

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http://dx.doi.org/10.3109/01677063.2011.597908DOI Listing
October 2011

Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage.

Cell Stem Cell 2011 Sep;9(3):219-32

Howard Hughes Medical Institute, Laboratory of Mammalian Cell Biology & Development, The Rockefeller University, New York, NY 10065, USA.

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http://dx.doi.org/10.1016/j.stem.2011.07.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166618PMC
September 2011

Characterization of the past and current duplication activities in the human 22q11.2 region.

BMC Genomics 2011 Jan 26;12:71. Epub 2011 Jan 26.

Department of Neurology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.

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http://dx.doi.org/10.1186/1471-2164-12-71DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040729PMC
January 2011

β-catenin promoter ChIP-chip reveals potential schizophrenia and bipolar disorder gene network.

J Neurogenet 2010 Dec 8;24(4):182-93. Epub 2010 Jul 8.

Department of Psychiatry and Behavioral Sciences, Division of Basic Research, Albert Einstein College of Medicine, Bronx, New York 10461, USA.

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http://dx.doi.org/10.3109/01677063.2010.495182DOI Listing
December 2010

Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions.

Proc Natl Acad Sci U S A 2010 Sep 7;107(38):16685-90. Epub 2010 Sep 7.

Institute for Brain Disorders and Neural Regeneration, Albert Einstein College of Medicine, Bronx, NY 10461, USA.

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http://dx.doi.org/10.1073/pnas.0906917107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2944745PMC
September 2010

REST and CoREST modulate neuronal subtype specification, maturation and maintenance.

PLoS One 2009 Dec 7;4(12):e7936. Epub 2009 Dec 7.

Institute for Brain Disorders and Neural Regeneration, Albert Einstein College of Medicine, Bronx, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007936PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2782136PMC
December 2009

Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation.

PLoS One 2009 Nov 3;4(11):e7665. Epub 2009 Nov 3.

Institute for Brain Disorders and Neural Regeneration, Albert Einstein College of Medicine, Bronx, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007665PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2766030PMC
November 2009

The Einstein Center for Epigenomics: studying the role of epigenomic dysregulation in human disease.

Epigenomics 2009 Oct;1(1):33-8

Price Center for Genetics and Translational Medicine, Albert Einstein College of Medicine, 1301 Morris Park Avenue, Bronx, NY 10461, USA.

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http://dx.doi.org/10.2217/epi.09.9DOI Listing
October 2009