Devin C Koestler

Devin C Koestler

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Devin C Koestler

Publications by authors named "Devin C Koestler"

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Improving survival prediction using a novel feature selection and feature reduction framework based on the integration of clinical and molecular data.

Pac Symp Biocomput 2020 ;25:415-426

Department of Biostatistics and Data Science, University of Kansas Medical Center, 3901 Rainbow Blvd., Kansas City, KS 66160, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6941850PMC
January 2020

Leveraging cell-specific differentially methylated regions to identify leukocyte infiltration in adipose tissue.

Genet Epidemiol 2019 12 21;43(8):1018-1029. Epub 2019 Aug 21.

Department of Epidemiology, School of Public Health, Brown University, Providence, Rhode Island.

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https://onlinelibrary.wiley.com/doi/abs/10.1002/gepi.22252
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http://dx.doi.org/10.1002/gepi.22252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6829028PMC
December 2019

A Bayesian framework for identifying consistent patterns of microbial abundance between body sites.

Stat Appl Genet Mol Biol 2019 Nov 8;18(6). Epub 2019 Nov 8.

Department of Biostatistics and Data Science, University of Kansas Medical Center, 3901 Rainbow Blvd, Kansas City, KS 66160, USA.

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http://dx.doi.org/10.1515/sagmb-2019-0027DOI Listing
November 2019

Serum dioxin and DNA methylation in the sperm of operation ranch hand veterans exposed to Agent Orange.

Environ Health 2019 10 29;18(1):91. Epub 2019 Oct 29.

Department of Pathology and Laboratory Medicine, Brown University School of Public Health, Providence, RI, 02912, USA.

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http://dx.doi.org/10.1186/s12940-019-0533-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6819394PMC
October 2019

Sex modulates hepatic mitochondrial adaptations to high-fat diet and physical activity.

Am J Physiol Endocrinol Metab 2019 Aug 30;317(2):E298-E311. Epub 2019 Apr 30.

Department of Molecular and Integrative Physiology, University of Kansas Medical Center , Kansas City, Kansas.

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https://www.physiology.org/doi/10.1152/ajpendo.00098.2019
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http://dx.doi.org/10.1152/ajpendo.00098.2019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6732468PMC
August 2019

Absence of an embryonic stem cell DNA methylation signature in human cancer.

BMC Cancer 2019 Jul 19;19(1):711. Epub 2019 Jul 19.

Department of Epidemiology, School of Public Health, Brown University, Providence, RI, USA.

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http://dx.doi.org/10.1186/s12885-019-5932-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6642562PMC
July 2019

pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).

BMC Bioinformatics 2019 Apr 29;20(1):218. Epub 2019 Apr 29.

Department of Biostatistics & Data Science, University of Kansas Medical Center, Kansas City, KS, USA.

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http://dx.doi.org/10.1186/s12859-019-2804-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489300PMC
April 2019

Variation in DNA methylation of human blood over a 1-year period using the Illumina MethylationEPIC array.

Epigenetics 2018 21;13(10-11):1056-1071. Epub 2018 Oct 21.

a Department of Public Health & Community Medicine, Tufts University School of Medicine , Tufts University , Boston , USA.

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http://dx.doi.org/10.1080/15592294.2018.1530008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342169PMC
March 2019

Using Machine Learning to Predict Sensorineural Hearing Loss Based on Perilymph Micro RNA Expression Profile.

Sci Rep 2019 Mar 4;9(1):3393. Epub 2019 Mar 4.

University of Kansas School of Medicine, Department of Otolaryngology-Head and Neck Surgery, Kansas City, KS, USA.

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http://dx.doi.org/10.1038/s41598-019-40192-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6399453PMC
March 2019

Subject level clustering using a negative binomial model for small transcriptomic studies.

BMC Bioinformatics 2018 Dec 12;19(1):474. Epub 2018 Dec 12.

Department of Biostatistics and Bioinformatics, Moffitt Cancer Center, 12902 Magnolia Drive, Tampa, FL, 33612, USA.

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http://dx.doi.org/10.1186/s12859-018-2556-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292049PMC
December 2018

Methylation-derived Neutrophil-to-Lymphocyte Ratio and Lung Cancer Risk in Heavy Smokers.

Cancer Prev Res (Phila) 2018 11 25;11(11):727-734. Epub 2018 Sep 25.

Department of Population Health Sciences, Huntsman Cancer Institute, University of Utah, Salt Lake City, Utah.

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http://cancerpreventionresearch.aacrjournals.org/lookup/doi/
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http://dx.doi.org/10.1158/1940-6207.CAPR-18-0111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214718PMC
November 2018

Tracing human stem cell lineage during development using DNA methylation.

Genome Res 2018 09 2;28(9):1285-1295. Epub 2018 Aug 2.

Department of Epidemiology, Brown University, Providence, Rhode Island 02912, USA.

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http://dx.doi.org/10.1101/gr.233213.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120629PMC
September 2018

Mediation analysis of alcohol consumption, DNA methylation, and epithelial ovarian cancer.

J Hum Genet 2018 Mar 10;63(3):339-348. Epub 2018 Jan 10.

Division of Health Statistics, School of Public Health, Shanxi Medical University, Taiyuan, Shanxi, 030001, China.

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http://dx.doi.org/10.1038/s10038-017-0385-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985822PMC
March 2018

Developing a genetic signature to predict drug response in ovarian cancer.

Oncotarget 2018 Mar 26;9(19):14828-14848. Epub 2017 Dec 26.

Department of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS, USA.

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http://www.oncotarget.com/fulltext/23663
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http://dx.doi.org/10.18632/oncotarget.23663DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5871081PMC
March 2018

Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival.

Clin Epigenetics 2017 2;9:10. Epub 2017 Feb 2.

Departments of Epidemiology, Pharmacology & Toxicology, and Community and Family Medicine, Geisel School of Medicine at Dartmouth College, Lebanon, NH 03756 USA.

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http://dx.doi.org/10.1186/s13148-017-0316-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5288996PMC
December 2017

Mitochondrial Haplotype Alters Mammary Cancer Tumorigenicity and Metastasis in an Oncogenic Driver-Dependent Manner.

Cancer Res 2017 12 25;77(24):6941-6949. Epub 2017 Oct 25.

Department of Cancer Biology, The University of Kansas Medical Center, Kansas City, Kansas.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-2194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5911920PMC
December 2017

Mitochondrial Genomic Backgrounds Affect Nuclear DNA Methylation and Gene Expression.

Cancer Res 2017 11 29;77(22):6202-6214. Epub 2017 Jun 29.

Department of Cancer Biology, University of Kansas Medical Center, Kansas City, Kansas.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-1473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690839PMC
November 2017

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer.

JCO Clin Cancer Inform 2017 11;1:1-15

Fatemeh Seyednasrollah and Laura L. Elo, Turku Centre for Biotechnology; University of Turku; Åbo Akademi University, Turku, Finland; Devin C. Koestler, University of Kansas Medical Center, Kansas City, KS; Tao Wang, University of Texas Southwestern Medical Center, Dallas, TX; Stephen R. Piccolo, Brigham Young University, Provo; University of Utah, Salt Lake City, Utah, UT; Roberto Vega, Russell Greiner, and Luke Kumar, University of Alberta; Alberta Innovates Centre for Machine Learning, Edmonton, Alberta, Canada; Christiane Fuchs, Helmholtz Zentrum München, Neuherberg; Technische Universität München, Garching, Germany; Eyal Gofer, The Hebrew University, Jerusalem, Israel; Russell D. Wolfinger, SAS Institute, Cary, NC; Kimberly Kanigel Winner and James C. Costello, University of Colorado, Anschutz Medical Campus, Aurora, CO; Chris Bare, Elias Chaibub Neto, Thomas Yu, Thea Norman, and Justin Guinney, Sage Bionetworks, Seattle, WA; Liji Shen and Fang Liz Zhou, Sanofi, Bridgewater, NJ; Kald Abdallah, AstraZeneca, Gaithersburg, MD; Gustavo Stolovitzky, IBM Research, Yorktown Heights; Howard I. Scher, Memorial Sloan Kettering Cancer Center and Weill Cornell Medical College, New York, NY; Howard R. Soule, Prostate Cancer Foundation, Santa Monica; Charles J. Ryan, University of California, San Francisco, CA; Christopher J. Sweeney, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA; and Oliver Sartor, Tulane University, New Orleans, LA.

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http://dx.doi.org/10.1200/CCI.17.00018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874023PMC
November 2017

Maternal serum PFOA concentration and DNA methylation in cord blood: A pilot study.

Environ Res 2017 10 20;158:174-178. Epub 2017 Jun 20.

Department of Epidemiology, Brown University, School of Public Health, Providence, RI 02912, USA. Electronic address:

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http://dx.doi.org/10.1016/j.envres.2017.06.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5554452PMC
October 2017

Integrative epigenetic and genetic pan-cancer somatic alteration portraits.

Epigenetics 2017 07 20;12(7):561-574. Epub 2017 Apr 20.

a Department of Epidemiology , Geisel School of Medicine at Dartmouth , Hanover , NH , USA.

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http://dx.doi.org/10.1080/15592294.2017.1319043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5687331PMC
July 2017

The aquaglyceroporin AQP9 contributes to the sex-specific effects of in utero arsenic exposure on placental gene expression.

Environ Health 2017 06 14;16(1):59. Epub 2017 Jun 14.

Molecular Oncology Program, DeWitt Daughtry Family Department of Surgery, University of Miami Miller School of Medicine, Miami, FL, 33136, USA.

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http://dx.doi.org/10.1186/s12940-017-0267-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5471920PMC
June 2017

DNA Methylation-Derived Neutrophil-to-Lymphocyte Ratio: An Epigenetic Tool to Explore Cancer Inflammation and Outcomes.

Cancer Epidemiol Biomarkers Prev 2017 03 13;26(3):328-338. Epub 2016 Dec 13.

Department of Neurological Surgery, Helen Diller Family Cancer Center, University of California San Francisco, San Francisco, California.

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http://cebp.aacrjournals.org/lookup/doi/10.1158/1055-9965.EP
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http://dx.doi.org/10.1158/1055-9965.EPI-16-0461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5336518PMC
March 2017

Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses.

Nat Methods 2017 02;14(3):216-217

CAS Key Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.

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http://dx.doi.org/10.1038/nmeth.4187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6659733PMC
February 2017

Fetal exposures and perinatal influences on the stool microbiota of premature infants.

J Matern Fetal Neonatal Med 2016 4;29(1):99-105. Epub 2015 Sep 4.

g Division of Neonatology, Department of Pediatrics , Dartmouth-Hitchcock Medical Center , Lebanon , NH , USA.

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http://dx.doi.org/10.3109/14767058.2014.987748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4476945PMC
September 2016

Enlarged leukocyte referent libraries can explain additional variance in blood-based epigenome-wide association studies.

Epigenomics 2016 09 16;8(9):1185-92. Epub 2016 Aug 16.

Department of Epidemiology, Brown University School of Public Health, Providence, RI 02912, USA.

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http://dx.doi.org/10.2217/epi-2016-0037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5072420PMC
September 2016

Prenatal Programming of Infant Neurobehaviour in a Healthy Population.

Paediatr Perinat Epidemiol 2016 07 23;30(4):367-75. Epub 2016 Mar 23.

Department of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, NH.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054721PMC
http://dx.doi.org/10.1111/ppe.12294DOI Listing
July 2016

Placental FKBP5 genetic and epigenetic variation is associated with infant neurobehavioral outcomes in the RICHS cohort.

PLoS One 2014 12;9(8):e104913. Epub 2014 Aug 12.

Department of Pharmacology and Toxicology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, United States of America; Department of Community and Family Medicine, Section of Biostatistics and Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0104913PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4130612PMC
April 2016

Differential DNA methylation in umbilical cord blood of infants exposed to mercury and arsenic in utero.

Epigenetics 2015 29;10(6):508-15. Epub 2015 Apr 29.

a School of Biological and Population Health Sciences; College of Public Health and Human Sciences; Oregon State University ; Corvallis , OR , USA.

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http://dx.doi.org/10.1080/15592294.2015.1046026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4622995PMC
March 2016

Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).

BMC Bioinformatics 2016 Mar 8;17:120. Epub 2016 Mar 8.

Department of Pathology and Laboratory Medicine, Brown University, 70 Ship St., Providence, 02912, RI, USA.

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http://dx.doi.org/10.1186/s12859-016-0943-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4782368PMC
March 2016

Genome wide DNA methylation profiles provide clues to the origin and pathogenesis of germ cell tumors.

PLoS One 2015 10;10(4):e0122146. Epub 2015 Apr 10.

Department of Pathology, Erasmus MC Cancer Institute-University Medical Center Rotterdam, Rotterdam, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122146PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479500PMC
December 2015

CpG island methylation profile in non-invasive oral rinse samples is predictive of oral and pharyngeal carcinoma.

Clin Epigenetics 2015 3;7:125. Epub 2015 Dec 3.

Department of Epidemiology, Brown University, Providence, RI USA ; Department of Pathology and Laboratory Medicine, Brown University, 70 Ship Street, Box G-E3, Providence, RI 02912 USA.

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http://dx.doi.org/10.1186/s13148-015-0160-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4668652PMC
December 2015

DNA methylation changes in the placenta are associated with fetal manganese exposure.

Reprod Toxicol 2015 Nov 15;57:43-9. Epub 2015 May 15.

Department of Pathology and Laboratory Medicine, Brown University, Providence, RI, USA; Department of Epidemiology, Brown University, Providence, RI, USA.

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http://dx.doi.org/10.1016/j.reprotox.2015.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4550511PMC
November 2015

The era of integrative genomics: more data or better methods?

Epigenomics 2014 ;6(5):463-7

Department of Biostatistics, University of Kansas Medical Center, 3901 Rainbow Blvd, Kansas City, KS 66160, USA.

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http://dx.doi.org/10.2217/epi.14.44DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4414242PMC
July 2015

Placental DNA Methylation Related to Both Infant Toenail Mercury and Adverse Neurobehavioral Outcomes.

Environ Health Perspect 2015 Jul 6;123(7):723-9. Epub 2015 Mar 6.

Penn State Tobacco Center of Regulatory Science, Department of Public Health Sciences, College of Medicine, Penn State University, Hershey, Pennsylvania, USA.

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http://dx.doi.org/10.1289/ehp.1408561DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492267PMC
July 2015

DNA methylation in ductal carcinoma in situ related with future development of invasive breast cancer.

Clin Epigenetics 2015 25;7:75. Epub 2015 Jul 25.

Department of Pharmacology and Toxicology, Geisel School of Medicine at Dartmouth, HB 7650, Remsen 611, Hanover, NH 03755 USA ; Department of Epidemiology, Geisel School of Medicine at Dartmouth, HB 7650, Remsen 611, Hanover, NH 03755 USA ; Department of Community and Family Medicine, Geisel School of Medicine at Dartmouth, Hanover, NH 03755 USA.

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http://dx.doi.org/10.1186/s13148-015-0094-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514996PMC
July 2015

GLI3 Links Environmental Arsenic Exposure and Human Fetal Growth.

EBioMedicine 2015 Jun 1;2(6):536-43. Epub 2015 May 1.

Molecular Oncology Program, DeWitt Daughtry Family Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA ; Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL 33136, USA ; Molecular Oncology Program, Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL 33136, USA.

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http://dx.doi.org/10.1016/j.ebiom.2015.04.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535308PMC
June 2015

Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients.

Epigenetics 2014 Jun 26;9(6):884-95. Epub 2014 Mar 26.

Department of Epidemiology; Brown University; Providence, RI USA; Department of Pathology & Laboratory Medicine; Brown University; Providence, RI USA.

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http://dx.doi.org/10.4161/epi.28575DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4065186PMC
June 2014

Integrative clustering methods for high-dimensional molecular data.

Transl Cancer Res 2014 Jun;3(3):202-216

Department of Biostatistics, University of Kansas Medical Center, Kansas City, KS 66160, USA.

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http://dx.doi.org/10.3978/j.issn.2218-676X.2014.06.03DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166480PMC
June 2014

Individualizing care for ovarian cancer patients using big data.

J Natl Cancer Inst 2014 Apr 3;106(5). Epub 2014 Apr 3.

Affiliations of authors: Department of Biostatistics (BLF, DK) and Department of Pathology and Laboratory Medicine (AKG), University of Kansas Medical Center, and University of Kansas Cancer Center (BLF, DK, AKG), Kansas City, KS.

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http://dx.doi.org/10.1093/jnci/dju080DOI Listing
April 2014

Age-related DNA methylation in normal breast tissue and its relationship with invasive breast tumor methylation.

Epigenetics 2014 Feb 6;9(2):268-75. Epub 2013 Nov 6.

Department of Community and Family Medicine; Section of Biostatistics and Epidemiology; Geisel School of Medicine at Dartmouth; Hanover, NH USA; Department of Pharmacology and Toxicology; Geisel School of Medicine at Dartmouth; Hanover, NH USA.

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http://dx.doi.org/10.4161/epi.27015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962537PMC
February 2014

Sex-specific associations between placental leptin promoter DNA methylation and infant neurobehavior.

Psychoneuroendocrinology 2014 Feb 30;40:1-9. Epub 2013 Oct 30.

Department of Pharmacology and Toxicology, Geisel School of Medicine at Dartmouth, 7650 Remsen, Hanover, NH 03755, USA; Section of Biostatistics and Epidemiology, Department of Community and Family Medicine, Geisel School of Medicine at Dartmouth and Norris Cotton Cancer Center, 1 Medical Center Drive, 7927 Rubin Building, Lebanon, NH 03756, USA. Electronic address:

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http://dx.doi.org/10.1016/j.psyneuen.2013.10.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912462PMC
February 2014

A recursively partitioned mixture model for clustering time-course gene expression data.

Transl Cancer Res 2014 ;3(3):217-232

Department of Public Health, Oregon State University, Corvallis, OR 97331, USA.

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http://dx.doi.org/10.3978/j.issn.2218-676X.2014.06.04DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208690PMC
January 2014

Tissue-specific Leptin promoter DNA methylation is associated with maternal and infant perinatal factors.

Mol Cell Endocrinol 2013 Dec 30;381(1-2):160-7. Epub 2013 Jul 30.

Department of Pharmacology and Toxicology, Geisel School of Medicine at Dartmouth, 7650 Remsen, Hanover, NH 03755, USA. Electronic address:

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http://dx.doi.org/10.1016/j.mce.2013.07.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795868PMC
December 2013

Developmental genes targeted for epigenetic variation between twin-twin transfusion syndrome children.

Clin Epigenetics 2013 Oct 3;5(1):18. Epub 2013 Oct 3.

Department of Pharmacology and Toxicology, Geisel Medical School at Dartmouth, Hanover, NH 03755, USA.

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http://clinicalepigeneticsjournal.biomedcentral.com/articles
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http://dx.doi.org/10.1186/1868-7083-5-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016001PMC
October 2013

Differential DNA methylation in umbilical cord blood of infants exposed to low levels of arsenic in utero.

Environ Health Perspect 2013 Aug 11;121(8):971-7. Epub 2013 Jun 11.

Department of Community and Family Medicine, Geisel School of Medicine, Dartmouth College, Hanover, NH 03755, USA.

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https://ehp.niehs.nih.gov/doi/10.1289/ehp.1205925
Publisher Site
http://dx.doi.org/10.1289/ehp.1205925DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733676PMC
August 2013

Placental HTR2A methylation is associated with infant neurobehavioral outcomes.

Epigenetics 2013 Aug 19;8(8):796-801. Epub 2013 Jun 19.

Department of Pharmacology and Toxicology; Geisel School of Medicine at Dartmouth; Dartmouth, NH USA.

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http://dx.doi.org/10.4161/epi.25358DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3883782PMC
August 2013

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis.

Epigenetics 2013 Aug 25;8(8):816-26. Epub 2013 Jun 25.

Department of Community and Family Medicine; Geisel School of Medicine at Dartmouth College; Lebanon, NH USA.

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http://dx.doi.org/10.4161/epi.25430DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3883785PMC
August 2013

Association between In Utero arsenic exposure, placental gene expression, and infant birth weight: a US birth cohort study.

Environ Health 2013 Jul 16;12:58. Epub 2013 Jul 16.

Department of Surgery, Molecular Oncology Program, Miller School of Medicine, University of Miami, Miami, FL 33136, USA.

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http://dx.doi.org/10.1186/1476-069X-12-58DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733767PMC
July 2013

Ensemble-based methods for forecasting census in hospital units.

BMC Med Res Methodol 2013 May 30;13:67. Epub 2013 May 30.

Department of Community and Family Medicine, Geisel School of Medicine at Dartmouth College, Lebanon, NH 03756, USA.

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http://dx.doi.org/10.1186/1471-2288-13-67DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3680345PMC
May 2013

Recursively partitioned mixture model clustering of DNA methylation data using biologically informed correlation structures.

Stat Appl Genet Mol Biol 2013 Mar 5;12(2):225-40. Epub 2013 Mar 5.

Department of Community and Family Medicine, Geisel School of Medicine at Dartmouth, 1 Medical Center Dr., Lebanon, NH 03756, USA.

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http://dx.doi.org/10.1515/sagmb-2012-0068DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4007267PMC
March 2013

Peripheral blood immune cell methylation profiles are associated with nonhematopoietic cancers.

Cancer Epidemiol Biomarkers Prev 2012 Aug 19;21(8):1293-302. Epub 2012 Jun 19.

Department of Community and Family Medicine, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA.

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http://dx.doi.org/10.1158/1055-9965.EPI-12-0361DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3415587PMC
August 2012

Placenta-imprinted gene expression association of infant neurobehavior.

J Pediatr 2012 May 6;160(5):854-860.e2. Epub 2011 Dec 6.

Department of Pharmacology and Toxicology, Dartmouth Medical School, Hanover, NH, USA.

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http://dx.doi.org/10.1016/j.jpeds.2011.10.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311768PMC
May 2012

DNA methylation arrays as surrogate measures of cell mixture distribution.

BMC Bioinformatics 2012 May 8;13:86. Epub 2012 May 8.

College of Public Health and Human Sciences, Oregon State University, Corvallis, OR 97331, USA.

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http://dx.doi.org/10.1186/1471-2105-13-86DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532182PMC
May 2012

In utero exposures, infant growth, and DNA methylation of repetitive elements and developmentally related genes in human placenta.

Environ Health Perspect 2012 Feb 17;120(2):296-302. Epub 2011 Oct 17.

Department of Epidemiology, Center for Environmental Health and Technology, Brown University, Providence, Rhode Island, USA.

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http://dx.doi.org/10.1289/ehp.1103927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3279448PMC
February 2012

Association of secondhand smoke exposures with DNA methylation in bladder carcinomas.

Cancer Causes Control 2011 Aug 10;22(8):1205-13. Epub 2011 Jun 10.

Department of Community Health Center for Environmental Health and Technology, Brown University, Providence, RI, USA.

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http://dx.doi.org/10.1007/s10552-011-9788-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3140591PMC
August 2011

Semi-supervised recursively partitioned mixture models for identifying cancer subtypes.

Bioinformatics 2010 Oct 16;26(20):2578-85. Epub 2010 Aug 16.

Department of Community Health, Section for Biostatistics, Center for Environmental Health and Technology, Brown University, Providence, RI 02912, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq470DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951086PMC
October 2010