Devika Ganesamoorthy

Devika Ganesamoorthy

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Devika Ganesamoorthy

Devika Ganesamoorthy

Publications by authors named "Devika Ganesamoorthy"

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22Publications

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npInv: accurate detection and genotyping of inversions using long read sub-alignment.

BMC Bioinformatics 2018 07 13;19(1):261. Epub 2018 Jul 13.

Genomics of Development and Disease Division, Institute for Molecular Bioscience, University of Queensland, 306 Carmody Rd, St Lucia, Brisbane, 4067, Australia.

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http://dx.doi.org/10.1186/s12859-018-2252-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6044046PMC
July 2018

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing.

BMC Bioinformatics 2018 07 16;19(1):267. Epub 2018 Jul 16.

Institute for Molecular Biosciences, University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1186/s12859-018-2282-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048696PMC
July 2018

Simulating the dynamics of targeted capture sequencing with CapSim.

Bioinformatics 2018 03;34(5):873-874

Institute for Molecular Bioscience, The University of Queensland, Brisbane, St Lucia, QLD 4072, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btx691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6192212PMC
March 2018

sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors.

Nucleic Acids Res 2017 03;45(5):e34

Institute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland, 4072, Australia.

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http://dx.doi.org/10.1093/nar/gkw1086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389684PMC
March 2017

Scaffolding and completing genome assemblies in real-time with nanopore sequencing.

Nat Commun 2017 02 20;8:14515. Epub 2017 Feb 20.

Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, Queensland 4072 Australia.

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http://dx.doi.org/10.1038/ncomms14515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321748PMC
February 2017

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION(TM) sequencing.

Gigascience 2016 07 26;5(1):32. Epub 2016 Jul 26.

Institute for Molecular Bioscience, The University of Queensland, 306 Carmody Road, St Lucia, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1186/s13742-016-0137-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4960868PMC
July 2016

Complete Genome Sequence of Klebsiella quasipneumoniae subsp. similipneumoniae Strain ATCC 700603.

Genome Announc 2016 May 26;4(3). Epub 2016 May 26.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia

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http://dx.doi.org/10.1128/genomeA.00438-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4882950PMC
May 2016

Realtime analysis and visualization of MinION sequencing data with npReader.

Bioinformatics 2016 03 10;32(5):764-6. Epub 2015 Nov 10.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia and Department of Genomics of Common Disease, Imperial College London, London W12 0NN, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv658DOI Listing
March 2016

Investigating and correcting plasma DNA sequencing coverage bias to enhance aneuploidy discovery.

PLoS One 2014 29;9(1):e86993. Epub 2014 Jan 29.

Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia ; Department of Mathematics and Statistics, University of Melbourne, Melbourne, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086993PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3906086PMC
September 2014

Use of copy number deletion polymorphisms to assess DNA chimerism.

Clin Chem 2014 Aug 4;60(8):1105-14. Epub 2014 Jun 4.

Murdoch Childrens Research Institute, Melbourne, VIC, Australia; Department of Paediatrics, University of Melbourne, Melbourne, VIC, Australia;

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http://dx.doi.org/10.1373/clinchem.2013.216077DOI Listing
August 2014

High-resolution microarray in the assessment of fetal anomalies detected by ultrasound.

Aust N Z J Obstet Gynaecol 2014 Feb;54(1):46-52

Pauline Gandel Imaging Centre, Royal Women's Hospital, Parkville, Victoria, Australia; Fetal Medicine Unit, Royal Women's Hospital, Parkville, Victoria, Australia.

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http://dx.doi.org/10.1111/ajo.12170DOI Listing
February 2014

Methylation of novel markers of fragile X alleles is inversely correlated with FMRP expression and FMR1 activation ratio.

Hum Mol Genet 2010 Apr 29;19(8):1618-32. Epub 2010 Jan 29.

Chromosome and Chromatin Research Laboratory, The Murdoch Childrens Research Institute, Royal Children's Hospital, Melbourne, Victoria 3052, Australia.

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http://dx.doi.org/10.1093/hmg/ddq037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846165PMC
April 2010

Development of a multiplex ligation-dependent probe amplification assay for diagnosis and estimation of the frequency of spinocerebellar ataxia type 15.

Clin Chem 2009 Jul 7;55(7):1415-8. Epub 2009 May 7.

Victorian Clinical Genetic Services and Murdoch Children's Research Institute, University of Melbourne, Department of Paediatrics, Royal Children's Hospital, Parkville, Victoria, Australia.

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http://dx.doi.org/10.1373/clinchem.2009.124958DOI Listing
July 2009