Publications by authors named "Detlef Weigel"

100Publications

HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing.

Mol Plant 2020 Dec 29. Epub 2020 Dec 29.

Instituto de Agrobiotecnología del Litoral (CONICET-UNL), Cátedra de Biología Celular y Molecular, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, 3000 Santa Fe, Argentina. Electronic address:

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December 2020

Male-specific Y-chromosomal regions in waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri).

New Phytol 2020 Dec 10. Epub 2020 Dec 10.

Department of Crop Sciences, University of Illinois, Turner Hall, 1102 S Goodwin Ave, Urbana, IL, 61801, USA.

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December 2020

A truncated singleton NLR causes hybrid necrosis in Arabidopsis thaliana.

Mol Biol Evol 2020 Sep 23. Epub 2020 Sep 23.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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September 2020

What natural variation can teach us about resistance durability.

Curr Opin Plant Biol 2020 08 11;56:89-98. Epub 2020 Jun 11.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany. Electronic address:

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August 2020

Identifying genetic variants underlying phenotypic variation in plants without complete genomes.

Nat Genet 2020 05 13;52(5):534-540. Epub 2020 Apr 13.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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May 2020

Blue Native Polyacrylamide Gel Electrophoresis (BN-PAGE) for the Analysis of Protein Oligomers in Plants.

Curr Protoc Plant Biol 2020 06;5(2):e20107

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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June 2020

Publishing in the time of COVID-19.

Elife 2020 03 25;9. Epub 2020 Mar 25.

eLife, Cambridge, United Kingdom.

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March 2020

Atypical Resistance Protein RPW8/HR Triggers Oligomerization of the NLR Immune Receptor RPP7 and Autoimmunity.

Cell Host Microbe 2020 Mar 25;27(3):405-417.e6. Epub 2020 Feb 25.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany. Electronic address:

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March 2020

Tropical Trees as Time Capsules of Anthropogenic Activity.

Trends Plant Sci 2020 04 6;25(4):369-380. Epub 2020 Feb 6.

Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany; Department of Archaeology, University of Queensland, St Lucia QLD, 4072, Brisbane, Australia.

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April 2020

The Earth BioGenome project: opportunities and challenges for plant genomics and conservation.

Plant J 2020 04 29;102(2):222-229. Epub 2020 Jan 29.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076, Tübingen, Germany.

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April 2020

AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana.

Nucleic Acids Res 2020 01;48(D1):D1063-D1068

Technical University of Munich, TUM Campus Straubing for Biotechnology and Sustainability, Bioinformatics, Straubing, Germany.

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January 2020

Publisher Correction: Natural selection on the Arabidopsis thaliana genome in present and future climates.

Nature 2019 Oct;574(7778):E16

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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October 2019

Multiple modes of convergent adaptation in the spread of glyphosate-resistant .

Proc Natl Acad Sci U S A 2019 10 30;116(42):21076-21084. Epub 2019 Sep 30.

Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON M5S 3B2, Canada.

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October 2019

An Ultra High-Density Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features.

Genetics 2019 11 16;213(3):771-787. Epub 2019 Sep 16.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.

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November 2019

Natural selection on the Arabidopsis thaliana genome in present and future climates.

Nature 2019 09 28;573(7772):126-129. Epub 2019 Aug 28.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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September 2019

A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana.

Cell 2019 08;178(5):1260-1272.e14

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.

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August 2019

RPW8/HR repeats control NLR activation in Arabidopsis thaliana.

PLoS Genet 2019 07 25;15(7):e1008313. Epub 2019 Jul 25.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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July 2019

Phytochrome activates the plastid-encoded RNA polymerase for chloroplast biogenesis via nucleus-to-plastid signaling.

Nat Commun 2019 06 14;10(1):2629. Epub 2019 Jun 14.

Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.

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June 2019

NCP activates chloroplast transcription by controlling phytochrome-dependent dual nuclear and plastidial switches.

Nat Commun 2019 06 14;10(1):2630. Epub 2019 Jun 14.

Department of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.

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June 2019

All in the Family: The First Whole-Genome Survey of NLR Genes.

Authors:
Detlef Weigel

Plant Cell 2019 06 29;31(6):1212-1213. Epub 2019 Apr 29.

Max Planck Institute for Developmental Biology72076 Tübingen, Germany

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June 2019

Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana.

PLoS Biol 2019 04 24;17(4):e3000214. Epub 2019 Apr 24.

Max Planck Institute for Developmental Biology, Tübingen, Germany.

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April 2019

Long-term balancing selection drives evolution of immunity genes in .

Elife 2019 02 26;8. Epub 2019 Feb 26.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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February 2019

Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in .

Genetics 2019 02 4;211(2):703-714. Epub 2018 Dec 4.

Department of Biology and Microbiology, South Dakota State University, Brookings, South Dakota 57007.

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February 2019

Comparing Arabidopsis receptor kinase and receptor protein-mediated immune signaling reveals BIK1-dependent differences.

New Phytol 2019 03 25;221(4):2080-2095. Epub 2018 Oct 25.

Department of Plant Biochemistry, Centre for Plant Molecular Biology, Eberhard Karls University Tübingen, Auf der Morgenstelle 32, D-72076, Tübingen, Germany.

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March 2019

An efficient CRISPR vector toolbox for engineering large deletions in .

Plant Methods 2018 2;14:65. Epub 2018 Aug 2.

1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.

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August 2018

Image-based methods for phenotyping growth dynamics and fitness components in .

Plant Methods 2018 26;14:63. Epub 2018 Jul 26.

1Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany.

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July 2018

Transmission ratio distortion is frequent in Arabidopsis thaliana controlled crosses.

Heredity (Edinb) 2019 03 28;122(3):294-304. Epub 2018 Jun 28.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076, Tübingen, Germany.

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March 2019

Adaptive diversification of growth allometry in the plant .

Proc Natl Acad Sci U S A 2018 Mar 14;115(13):3416-3421. Epub 2018 Mar 14.

Max Planck Institute for Developmental Biology, D-72076 Tübingen, Germany;

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March 2018

Genome-wide signatures of flowering adaptation to climate temperature: Regional analyses in a highly diverse native range of Arabidopsis thaliana.

Plant Cell Environ 2018 08 20;41(8):1806-1820. Epub 2018 Apr 20.

Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB), Consejo Superior de Investigaciones Científicas (CSIC), 28049, Madrid, Spain.

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August 2018

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell.

Nat Commun 2018 02 7;9(1):541. Epub 2018 Feb 7.

Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, 92037, USA.

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February 2018

Genomic basis and evolutionary potential for extreme drought adaptation in Arabidopsis thaliana.

Nat Ecol Evol 2018 02 18;2(2):352-358. Epub 2017 Dec 18.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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February 2018

A Role for the F-Box Protein HAWAIIAN SKIRT in Plant microRNA Function.

Plant Physiol 2018 01 7;176(1):730-741. Epub 2017 Nov 7.

Max Planck Institute for Developmental Biology, Tübingen, Germany

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January 2018

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog.

Nucleic Acids Res 2018 01;46(D1):D1150-D1156

Machine Learning and Computational Biology Lab, Department of Biosystems Science and Engineering, ETH Zürich, 4058 Basel, Switzerland.

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January 2018

The MicroRNA miR773 Is Involved in the Arabidopsis Immune Response to Fungal Pathogens.

Mol Plant Microbe Interact 2018 Feb 6;31(2):249-259. Epub 2017 Dec 6.

1 Centre for Research in Agricultural Genomics (CRAG) CSIC, IRTA, UAB, UB. Edifici CRAG. Carrer de la Vall Moronta. Campus UAB, Bellaterra (Cerdanyola del Vallés), 08193 Barcelona, Spain.

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February 2018

Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis.

Nat Plants 2017 Sep 28;3(9):742-748. Epub 2017 Aug 28.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstraße 35, 72076, Tübingen, Germany.

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September 2017

Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid.

Genome Biol 2017 08 22;18(1):157. Epub 2017 Aug 22.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, 72076, Germany.

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August 2017

SPF45-related splicing factor for phytochrome signaling promotes photomorphogenesis by regulating pre-mRNA splicing in .

Proc Natl Acad Sci U S A 2017 08 31;114(33):E7018-E7027. Epub 2017 Jul 31.

Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712;

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August 2017

Activation of a Plant NLR Complex through Heteromeric Association with an Autoimmune Risk Variant of Another NLR.

Curr Biol 2017 Apr 13;27(8):1148-1160. Epub 2017 Apr 13.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany. Electronic address:

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April 2017

Rapid generation of a transgene-free powdery mildew resistant tomato by genome deletion.

Sci Rep 2017 03 28;7(1):482. Epub 2017 Mar 28.

The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK.

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March 2017

The Arabidopsis miR396 mediates pathogen-associated molecular pattern-triggered immune responses against fungal pathogens.

Sci Rep 2017 03 23;7:44898. Epub 2017 Mar 23.

Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB. Edifici CRAG, Campus UAB, Bellaterra (Cerdanyola del Vallés), 08193 Barcelona, Spain.

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March 2017

A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.

Mol Ecol 2017 Jul 2;26(13):3389-3404. Epub 2017 May 2.

Facultad de Agronomía, IFEVA, CONICET, Universidad de Buenos Aires, Av. San Martín 4453, C1417DSE, Ciudad de Buenos Aires, Argentina.

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July 2017

On the post-glacial spread of human commensal Arabidopsis thaliana.

Nat Commun 2017 02 9;8:14458. Epub 2017 Feb 9.

Gregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030 Vienna, Austria.

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February 2017

Why I Love Genetics: Essay on Occasion of Being Awarded the GSA Medal 2016.

Authors:
Detlef Weigel

Genetics 2016 11;204(3):841-843

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany

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November 2016

The Genome of the Trinidadian Guppy, Poecilia reticulata, and Variation in the Guanapo Population.

PLoS One 2016 29;11(12):e0169087. Epub 2016 Dec 29.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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July 2017

Forever Young: The Role of Ubiquitin Receptor DA1 and E3 Ligase BIG BROTHER in Controlling Leaf Growth and Development.

Plant Physiol 2017 02 21;173(2):1269-1282. Epub 2016 Dec 21.

Department of Plant Systems Biology, VIB, 9052 Gent, Belgium (H.V., Y.-J.N., L.D.M., V.S., N.G., D.I.); Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium (H.V., Y.-J.N., L.D.M., V.S., N.G., D.I.); INRA Bordeaux-Aquitaine, 33140 Villenave d'Ornon, France (N.G.); and Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany (E.C., D.W.)

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February 2017

easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies.

Plant Cell 2017 01 16;29(1):5-19. Epub 2016 Dec 16.

Machine Learning and Computational Biology Research Group, Max Planck Institute for Intelligent Systems and Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany

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January 2017

AraPheno: a public database for Arabidopsis thaliana phenotypes.

Nucleic Acids Res 2017 01 24;45(D1):D1054-D1059. Epub 2016 Oct 24.

Center for Computational and Theoretical Biology, University Würzburg, Würzburg, Germany

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January 2017

Natural Variation of Molecular and Morphological Gibberellin Responses.

Plant Physiol 2017 01 22;173(1):703-714. Epub 2016 Nov 22.

Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium (Y.J.N., D.H., F.C., V.S., T.V.D., S.D., D.I., N.G.).

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January 2017

Methods for Genotyping-by-Sequencing.

Methods Mol Biol 2017 ;1492:221-242

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstrasse 37-39, 72076, Tübingen, Germany.

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January 2018

Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants.

BMC Genomics 2016 11 2;17(1):853. Epub 2016 Nov 2.

Biochemistry Center Regensburg (BZR), Laboratory for RNA Biology, University of Regensburg, Universitätsstrasse 31, 93053, Regensburg, Germany.

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November 2016

Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids.

Proc Natl Acad Sci U S A 2016 Nov 1;113(46):E7317-E7326. Epub 2016 Nov 1.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany;

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November 2016

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.

Cell 2016 Jul;166(2):492-505

Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA; Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA. Electronic address:

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July 2016

Effector-Triggered Immune Response in Arabidopsis thaliana Is a Quantitative Trait.

Genetics 2016 09 13;204(1):337-53. Epub 2016 Jul 13.

Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599 Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, North Carolina 27599

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September 2016

Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution.

Genome Res 2016 08 25;26(8):1057-68. Epub 2016 May 25.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany;

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August 2016

Allelochemicals of the phenoxazinone class act at physiologically relevant concentrations.

Plant Signal Behav 2016 05;11(5):e1176818

b Department of Molecular Biology , Max Planck Institute for Developmental Biology , Tübingen , Germany.

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May 2016

Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids.

Proc Natl Acad Sci U S A 2016 Apr 21;113(14):E2083-92. Epub 2016 Mar 21.

Laboratoire Génétique Reproduction et Développement, CNRS, UMR 6293, INSERM U1103, F-63001 Clermont-Ferrand, France; Laboratoire Génétique Reproduction et Développement, Université Clermont Auvergne, Université Blaise Pascal, BP 10448, F-63000 Clermont-Ferrand, France;

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April 2016

Cooperation and Conflict in the Plant Immune System.

PLoS Pathog 2016 Mar 17;12(3):e1005452. Epub 2016 Mar 17.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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March 2016

A proposed regulatory framework for genome-edited crops.

Nat Genet 2016 Feb;48(2):109-11

State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Beijing, China.

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February 2016

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation.

PLoS Biol 2016 Jan 20;14(1):e1002352. Epub 2016 Jan 20.

Max Planck Institute for Plant Breeding Research, Cologne, Germany.

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January 2016

Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts.

Science 2015 Oct 22;350(6259):450-4. Epub 2015 Oct 22.

Plant Biology Laboratory, The Salk Institute, La Jolla, CA. Howard Hughes Medical Institute, The Salk Institute, La Jolla, CA.

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October 2015

Population Genomics for Understanding Adaptation in Wild Plant Species.

Annu Rev Genet 2015 2;49:315-38. Epub 2015 Oct 2.

Gregor Mendel Institute, Austrian Academy of Sciences, Vienna Biocenter, 1030 Vienna, Austria; email:

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September 2016

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.

PLoS One 2015 18;10(9):e0137391. Epub 2015 Sep 18.

Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829, Cologne, Germany.

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May 2016

Chromatin in 3D: progress and prospects for plants.

Genome Biol 2015 Aug 21;16:170. Epub 2015 Aug 21.

Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany.

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August 2015

Salinity Is an Agent of Divergent Selection Driving Local Adaptation of Arabidopsis to Coastal Habitats.

Plant Physiol 2015 Jul 1;168(3):915-29. Epub 2015 Jun 1.

Plant Physiology Laboratory, Bioscience Faculty, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain (S.B., J.T., C.P.);Institute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (X.-Y.H., J.D., A.D., D.E.S.); andMax Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (K.B., D.W.)

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July 2015

Mutant Allele-Specific Uncoupling of PENETRATION3 Functions Reveals Engagement of the ATP-Binding Cassette Transporter in Distinct Tryptophan Metabolic Pathways.

Plant Physiol 2015 Jul 28;168(3):814-27. Epub 2015 May 28.

Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany (X.L., J.Di., M.P.-B., P.B., P.S.-L.);Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznan, Poland (M.P.-B., P.B.);Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid, 28223 Madrid, Spain (A.M.); Research Groups on Biosynthesis/Nuclear Magnetic Resonance (B.S.) and Mass Spectrometry/Proteomics (A.S., J.Do.), Max Planck Institute for Chemical Ecology, 07745 Jena, Germany; andDepartment of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tuebingen, Germany (K.S., D.W.)

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July 2015

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives.

Nat Rev Genet 2015 May 9;16(5):285-98. Epub 2015 Apr 9.

Max Planck Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany.

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May 2015

Dissection of miRNA pathways using arabidopsis mesophyll protoplasts.

Mol Plant 2015 Feb 11;8(2):261-75. Epub 2014 Dec 11.

Plant Stress Signaling, Instituto Gulbenkian de Ciência, Rua da Quinta Grande - 6, 2780-156 Oeiras, Portugal. Electronic address:

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February 2015