Derrick E Fouts

Derrick E Fouts

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Derrick E Fouts

Derrick E Fouts

Publications by authors named "Derrick E Fouts"

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Bacteriophage φEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other Identified Enterococcus faecalis Phage Endolysins.

Appl Environ Microbiol 2019 07 17;85(13). Epub 2019 Jun 17.

Department of Endodontology, Kornberg School of Dentistry, Temple University, Philadelphia, Pennsylvania, USA

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http://dx.doi.org/10.1128/AEM.00555-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581165PMC
July 2019

Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice.

Gut Microbes 2019 Apr 14:1-11. Epub 2019 Apr 14.

a Department of Medicine , University of California San Diego , La Jolla , USA.

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http://dx.doi.org/10.1080/19490976.2019.1595300DOI Listing
April 2019

Large-scale comparative analysis of microbial pan-genomes using PanOCT.

Bioinformatics 2019 03;35(6):1049-1050

Department of Informatics, J. Craig Venter Institute, Rockville, MD, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6419995PMC
March 2019

Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire.

mBio 2019 03 26;10(2). Epub 2019 Mar 26.

Department of Medicine, Case Western Reserve University and CWRU-Cleveland VAMC Center for Antimicrobial Resistance and Epidemiology, Cleveland, Ohio, USA.

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http://dx.doi.org/10.1128/mBio.00356-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6437055PMC
March 2019

OMeta: an ontology-based, data-driven metadata tracking system.

BMC Bioinformatics 2019 Jan 7;20(1). Epub 2019 Jan 7.

J. Craig Venter Institute, 9605 Medical Center Drive, Suite 150, Rockville, MD, 20850, USA.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2580-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322262PMC
January 2019

Sequence heterogeneity of the PenA carbapenemase in clinical isolates of Burkholderia multivorans.

Diagn Microbiol Infect Dis 2018 Nov 18;92(3):253-258. Epub 2018 Jun 18.

Research Service, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, OH 44106, USA; Department of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; Department of Biochemistry, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA. Electronic address:

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http://dx.doi.org/10.1016/j.diagmicrobio.2018.06.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173980PMC
November 2018

Characterization of the AmpC β-Lactamase from Burkholderia multivorans.

Antimicrob Agents Chemother 2018 10 24;62(10). Epub 2018 Sep 24.

Research Service, Louis Stokes Cleveland Department of Veterans Affairs, Cleveland, Ohio, USA

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http://dx.doi.org/10.1128/AAC.01140-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153817PMC
October 2018

HSV-1 clinical isolates with unique in vivo and in vitro phenotypes and insight into genomic differences.

J Neurovirol 2017 04 13;23(2):171-185. Epub 2016 Oct 13.

Department of Oral Health Practice, Division of Oral Medicine, Center for Oral Health Research, College of Dentistry, University of Kentucky, Lexington, KY, USA.

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http://dx.doi.org/10.1007/s13365-016-0485-9DOI Listing
April 2017

Structural proteins of bacteriophage Ef11.

Bacteriophage 2016 4;6(4):e1251381. Epub 2016 Nov 4.

Department of Genomic Medicine, J Craig Venter Institute , Rockville, MD, USA.

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http://dx.doi.org/10.1080/21597081.2016.1251381DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5221750PMC
November 2016

Intestinal REG3 Lectins Protect against Alcoholic Steatohepatitis by Reducing Mucosa-Associated Microbiota and Preventing Bacterial Translocation.

Cell Host Microbe 2016 Feb;19(2):227-39

Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA; Department of Medicine, VA San Diego Healthcare System, San Diego, CA 92161, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2016.01.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4786170PMC
February 2016

Genome Sequences of the Listeria ivanovii subsp. ivanovii Type Strain and Two Listeria ivanovii subsp. londoniensis Strains.

Genome Announc 2015 Jan 22;3(1). Epub 2015 Jan 22.

Institute of Food, Nutrition and Health, ETH Zürich, Zürich, Switzerland

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http://dx.doi.org/10.1128/genomeA.01440-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4319588PMC
January 2015

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.

BMC Bioinformatics 2014 Nov 19;15:357. Epub 2014 Nov 19.

Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA.

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http://dx.doi.org/10.1186/s12859-014-0357-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245761PMC
November 2014

Pathogenomic inference of virulence-associated genes in Leptospira interrogans.

PLoS Negl Trop Dis 2013 3;7(10):e2468. Epub 2013 Oct 3.

Division of Infectious Diseases, Department of Medicine, University of California San Diego School of Medicine, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0002468DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3789758PMC
May 2014

Leptospiral pathogenomics.

Pathogens 2014 Apr 10;3(2):280-308. Epub 2014 Apr 10.

Craig Venter Institute, Rockville, MD 20850, USA.

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http://dx.doi.org/10.3390/pathogens3020280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243447PMC
April 2014

Bacteriophage functional genomics and its role in bacterial pathogen detection.

Brief Funct Genomics 2013 Jul 21;12(4):354-65. Epub 2013 Mar 21.

Institute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1093/bfgp/elt009DOI Listing
July 2013

Sequencing viral genomes from a single isolated plaque.

Virol J 2013 Jun 6;10:181. Epub 2013 Jun 6.

Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/1743-422X-10-181DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3693891PMC
June 2013

Next generation sequencing technologies and the changing landscape of phage genomics.

Bacteriophage 2012 Jul;2(3):190-199

Institute of Food, Nutrition and Health; ETH Zurich; Zurich, Switzerland.

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http://dx.doi.org/10.4161/bact.22111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530529PMC
July 2012

The annotated complete DNA sequence of Enterococcus faecalis bacteriophage φEf11 and its comparison with all available phage and predicted prophage genomes.

FEMS Microbiol Lett 2011 Apr 24;317(1):9-26. Epub 2011 Jan 24.

Department of Endodontology, Temple University Kornberg School of Dentistry, Philadelphia, PA 19140, USA.

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http://dx.doi.org/10.1111/j.1574-6968.2010.02203.xDOI Listing
April 2011

Enteric dysbiosis associated with a mouse model of alcoholic liver disease.

Hepatology 2011 Jan 10;53(1):96-105. Epub 2010 Dec 10.

Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1002/hep.24018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059122PMC
January 2011

Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.

Microb Ecol 2010 Nov 29;60(4):721-9. Epub 2010 Jun 29.

Department of Human Genomic Medicine, The J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.

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http://dx.doi.org/10.1007/s00248-010-9692-8DOI Listing
November 2010

Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs.

PLoS Genet 2009 Dec 24;5(12):e1000786. Epub 2009 Dec 24.

Channing Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1371/journal.pgen.1000786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2791158PMC
December 2009

Phage_Finder: automated identification and classification of prophage regions in complete bacterial genome sequences.

Authors:
Derrick E Fouts

Nucleic Acids Res 2006 24;34(20):5839-51. Epub 2006 Oct 24.

The Institute for Genomic research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1093/nar/gkl732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1635311PMC
December 2006

The Bacillus anthracis chromosome contains four conserved, excision-proficient, putative prophages.

BMC Microbiol 2006 Apr 6;6:34. Epub 2006 Apr 6.

Biological Defense Research Directorate, Naval Medical Research Center, 503 Robert Grant Avenue, Silver Spring, Maryland 20852, USA.

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http://dx.doi.org/10.1186/1471-2180-6-34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1475869PMC
April 2006