Derek Van Booven

Derek Van Booven

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Derek Van Booven

Derek Van Booven

Publications by authors named "Derek Van Booven"

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28Publications

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Analysis of diet-induced differential methylation, expression, and interactions of lncRNA and protein-coding genes in mouse liver.

Sci Rep 2018 Aug 1;8(1):11537. Epub 2018 Aug 1.

John P Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.

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August 2018

Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells.

Invest Ophthalmol Vis Sci 2018 Jul;59(8):3608-3618

John P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami Miller School of Medicine, Miami, Florida, United States.

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July 2018

Identification of rare noncoding sequence variants in gamma-aminobutyric acid A receptor, alpha 4 subunit in autism spectrum disorder.

Neurogenetics 2018 Jan 18;19(1):17-26. Epub 2017 Nov 18.

John P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, FL, USA.

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January 2018

High-throughput analysis reveals novel maternal germline RNAs crucial for primordial germ cell preservation and proper migration.

Development 2017 01;144(2):292-304

Department of Cell Biology, University of Miami Miller School of Medicine, 1011 NW 15th St, Miami, FL 33136, USA

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January 2017

Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring.

Genome Med 2016 09 8;8(1):93. Epub 2016 Sep 8.

Department of Psychiatry and Behavioral Sciences and Center for Therapeutic Innovation, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.

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September 2016

ABCA7 frameshift deletion associated with Alzheimer disease in African Americans.

Neurol Genet 2016 Jun 17;2(3):e79. Epub 2016 May 17.

John P. Hussman Institute for Human Genomics (H.N.C., B.W.K., S.R., K.L.H.-N., M.A.K., P.L.W., D.V.B., D.M.D., M.L.C., J.M.V., J.R.G., G.W.B., E.R.M., R.M.C., M.A.P.-V.), Department of Neurology (H.N.C., J.M.V., M.A.P.-V.), Dr. John T. Macdonald Foundation Department of Human Genetics (D.M.D., M.L.C., J.M.V., J.R.G., G.W.B., E.R.M., R.M.C.), Miller School of Medicine, University of Miami, FL; The Taub Institute for Research on Alzheimer's Disease and the Aging Brain (B.N.V., R.M.), Gertrude H. Sergievsky Center, Departments of Neurology, Psychiatry, and Epidemiology, College of Physicians and Surgeons, Columbia University, New York, NY; Department of Pathology and Laboratory Medicine (B.A.D., G.D.S.), University of Pennsylvania Perelman School of Medicine, Philadelphia, PA; Department of Biology (R.L., G.S.B., M.A.P.-V.), North Carolina A&T State University, Greensboro, NC; Departments of Medicine, Neurology, Ophthalmology, Genetics & Genomics, Epidemiology, and Biostatistics (L.A.F.), Boston University, MA; and Department of Epidemiology and Biostatistics (J.L.H.), Institute for Computational Biology, Case Western Reserve University School of Medicine, Cleveland, OH.

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June 2016

Pharmacogenomic assessment of Mexican and Peruvian populations.

Pharmacogenomics 2015 ;16(5):441-8

Faculty of Pharmacy & Pharmaceutical Sciences, 3142F Katz Centre for Pharmacy & Health Research, University of Alberta, Edmonton, AB T6G 2E1, Canada.

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January 2016

Targeted massively parallel sequencing of autism spectrum disorder-associated genes in a case control cohort reveals rare loss-of-function risk variants.

Mol Autism 2015 7;6:43. Epub 2015 Jul 7.

John P. Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, FL 33136 USA ; Dr. John T. Macdonald Foundation Department of Human Genetics, Miller School of Medicine, University of Miami, Miami, FL 33136 USA.

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July 2015

Epigenetic reprogramming of melanoma cells by vitamin C treatment.

Clin Epigenetics 2015 29;7:51. Epub 2015 Apr 29.

John P. Hussman Institute for Human Genomics, Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami Miller School of Medicine, Miami, FL 33136 USA ; Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL 33136 USA ; Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL 33136 USA.

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May 2015

HeatmapGenerator: high performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline.

Source Code Biol Med 2014 24;9(1):30. Epub 2014 Dec 24.

Center for Therapeutic Innovation and Department of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, 1120 NW 14th ST, Miami, 33136 FL USA.

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December 2014

Identification of copy number variants through whole-exome sequencing in autosomal recessive nonsyndromic hearing loss.

Genet Test Mol Biomarkers 2014 Sep 25;18(9):658-61. Epub 2014 Jul 25.

1 John P. Hussmann Institute for Human Genomics, Miller School of Medicine, University of Miami , Miami, Florida.

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September 2014

GEnomes Management Application (GEM.app): a new software tool for large-scale collaborative genome analysis.

Hum Mutat 2013 Jun 3;34(6):842-6. Epub 2013 Apr 3.

Dr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.

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June 2013

Whole Genome Sequencing and a New Bioinformatics Platform Allow for Rapid Gene Identification in D. melanogaster EMS Screens.

Biology (Basel) 2012 Dec 5;1(3):766-77. Epub 2012 Dec 5.

Dr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, USA.

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December 2012

RISC RNA sequencing for context-specific identification of in vivo microRNA targets.

Circ Res 2011 Jan 28;108(1):18-26. Epub 2010 Oct 28.

Center for Pharmacogenomics, Department of Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.

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January 2011

Association of an intronic, but not any exonic, FRMD4B sequence variant and heart failure.

Clin Transl Sci 2010 Aug;3(4):134-9

The Center for Pharmacogenomics, Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, USA.

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August 2010

Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators: application to Galphaq.

Circ Res 2010 May 1;106(9):1459-67. Epub 2010 Apr 1.

Department of Medicine, Center for Pharmacogenomics, Washington University School of Medicine, St Louis, Mo 63110, USA.

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May 2010

Cytochrome P450 2C9-CYP2C9.

Pharmacogenet Genomics 2010 Apr;20(4):277-81

Center for Pharmacogenomics at Washington University, St Louis, Missouri, USA.

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April 2010

Cardiac signaling genes exhibit unexpected sequence diversity in sporadic cardiomyopathy, revealing HSPB7 polymorphisms associated with disease.

J Clin Invest 2010 Jan 14;120(1):280-9. Epub 2009 Dec 14.

Center for Pharmacogenomics, Department of Medicine, Washington University School of Medicine, 660 S. Eucliud Avenue, St. Louis, Missouri 63110, USA.

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January 2010

Irinotecan pharmacogenetics: influence of pharmacodynamic genes.

Clin Cancer Res 2008 Mar;14(6):1788-96

Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri, USA.

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March 2008

Pyrosequencing genotype storage techniques.

Methods Mol Biol 2007 ;373:177-86

Division of Oncology, Washington University School of Medicine, St. Louis, MO, USA.

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June 2007

Identification of NR1I2 genetic variation using resequencing.

Eur J Clin Pharmacol 2007 Jun 3;63(6):547-54. Epub 2007 Apr 3.

Department of Medicine, Washington University School of Medicine, St. Louis, MO, 63110, USA.

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June 2007

Global pharmacogenetics: giving the genome to the masses.

Pharmacogenomics 2006 Jun;7(4):625-31

Washington University School of Medicine, Department of Medicine, Room 1021 CSRB NT, 660 South Euclid Avenue, Campus Box 8069, St Louis, MO 63110, USA.

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June 2006

Polymorphism discovery in 51 chemotherapy pathway genes.

Hum Mol Genet 2005 Dec 20;14(23):3595-603. Epub 2005 Oct 20.

Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA.

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December 2005