Dennis H Bamford

Dennis H Bamford

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Dennis H Bamford

Dennis H Bamford

Publications by authors named "Dennis H Bamford"

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Novel haloarchaeal viruses from Lake Retba infecting Haloferax and Halorubrum species.

Environ Microbiol 2019 06 14;21(6):2129-2147. Epub 2019 Apr 14.

Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Finland.

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http://dx.doi.org/10.1111/1462-2920.14604DOI Listing
June 2019

Structural basis for assembly of vertical single β-barrel viruses.

Nat Commun 2019 03 12;10(1):1184. Epub 2019 Mar 12.

Molecular Recognition and Host-pathogen Interactions Programme, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, 48160, Derio, Spain.

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http://www.nature.com/articles/s41467-019-08927-2
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http://dx.doi.org/10.1038/s41467-019-08927-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6414509PMC
March 2019

Extremely halophilic pleomorphic archaeal virus HRPV9 extends the diversity of pleolipoviruses with integrases.

Res Microbiol 2018 Nov 14;169(9):500-504. Epub 2018 May 14.

Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9B, FI-00014, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.resmic.2018.04.004DOI Listing
November 2018

Asymmetrical flow field-flow fractionation in purification of an enveloped bacteriophage ϕ6.

J Chromatogr B Analyt Technol Biomed Life Sci 2018 Sep 10;1095:251-257. Epub 2018 Jul 10.

Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9B, FI-00014 Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.jchromb.2018.07.008DOI Listing
September 2018

Topical treatment of herpes simplex virus infection with enzymatically created siRNA swarm.

Antivir Ther 2017 13;22(7):631-637. Epub 2017 Mar 13.

Department of Virology, University of Turku, Turku, Finland.

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http://dx.doi.org/10.3851/IMP3153DOI Listing
July 2018

Genome Sequence of PM2-Like Phage Cr39582, Induced from a Pseudoalteromonas sp. Isolated from the Gut of Ciona robusta.

Genome Announc 2018 May 24;6(21). Epub 2018 May 24.

Department of Pediatrics, Children's Research Institute, University of South Florida, St. Petersburg, Florida, USA

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http://dx.doi.org/10.1128/genomeA.00368-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5968719PMC
May 2018

The first known virus isolates from Antarctic sea ice have complex infection patterns.

FEMS Microbiol Ecol 2018 04;94(4)

Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1093/femsec/fiy028DOI Listing
April 2018

Towards in cellulo virus crystallography.

Sci Rep 2018 02 28;8(1):3771. Epub 2018 Feb 28.

Molecular and Integrative Biosciences Research Program, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1038/s41598-018-21693-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5830620PMC
February 2018

The Unexplored Diversity of Pleolipoviruses: The Surprising Case of Two Viruses with Identical Major Structural Modules.

Genes (Basel) 2018 Feb 28;9(3). Epub 2018 Feb 28.

Research Programme on Molecular and Integrative Biosciences, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, FI-00014 Helsinki, Finland.

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http://dx.doi.org/10.3390/genes9030131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5867852PMC
February 2018

ICTV Virus Taxonomy Profile: Pleolipoviridae.

J Gen Virol 2017 Dec 10;98(12):2916-2917. Epub 2017 Nov 10.

Department of Biosciences, University of Helsinki, Viikinkaari 9B, FI-00014, Helsinki, Finland.

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http://dx.doi.org/10.1099/jgv.0.000972DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5882103PMC
December 2017

Halophilic viruses with varying biochemical and biophysical properties are amenable to purification with asymmetrical flow field-flow fractionation.

Extremophiles 2017 Nov 10;21(6):1119-1132. Epub 2017 Oct 10.

Department of Biosciences, University of Helsinki, Viikinkaari 9, 00014, Helsinki, Finland.

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http://dx.doi.org/10.1007/s00792-017-0963-xDOI Listing
November 2017

The enigmatic archaeal virosphere.

Nat Rev Microbiol 2017 Nov;15(12):724-739

Department of Microbiology, Institut Pasteur, 25 rue du Dr Roux, Paris 75015, France.

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http://dx.doi.org/10.1038/nrmicro.2017.125DOI Listing
November 2017

Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification.

J Virol 2017 04 29;91(8). Epub 2017 Mar 29.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland

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http://dx.doi.org/10.1128/JVI.02275-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5375668PMC
April 2017

Membrane-assisted viral DNA ejection.

Biochim Biophys Acta Gen Subj 2017 Mar 16;1861(3):664-672. Epub 2016 Dec 16.

Structural Biology Unit, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, 48160 Derio, Spain; IKERBASQUE, Basque Foundation for Science, 48013 Bilbao, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.bbagen.2016.12.013DOI Listing
March 2017

HCIV-1 and Other Tailless Icosahedral Internal Membrane-Containing Viruses of the Family Sphaerolipoviridae.

Viruses 2017 02 18;9(2). Epub 2017 Feb 18.

Department of Biosciences and Institute of Biotechnology, Viikinkaari 9, FIN-00014, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.3390/v9020032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5332951PMC
February 2017

Single-molecule measurements of viral ssRNA packaging.

RNA 2017 01 1;23(1):119-129. Epub 2016 Nov 1.

Department of Biosciences, University of Helsinki, Helsinki 00014, Finland.

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http://dx.doi.org/10.1261/rna.057471.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5159644PMC
January 2017

Inhibition of clinical pathogenic herpes simplex virus 1 strains with enzymatically created siRNA pools.

J Med Virol 2016 12 30;88(12):2196-2205. Epub 2016 May 30.

Department of Virology, University of Turku, Turku, Finland.

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http://dx.doi.org/10.1002/jmv.24578DOI Listing
December 2016

Vesicle-like virion of Haloarcula hispanica pleomorphic virus 3 preserves high infectivity in saturated salt.

Virology 2016 12 12;499:40-51. Epub 2016 Sep 12.

Institute of Biotechnology and Department of Biosciences, University of Helsinki, Viikinkaari 9, 00014, Finland.

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http://dx.doi.org/10.1016/j.virol.2016.09.002DOI Listing
December 2016

Asymmetric flow field flow fractionation methods for virus purification.

J Chromatogr A 2016 Oct 28;1469:108-119. Epub 2016 Sep 28.

Department of Biosciences and Institute of Biotechnology, Viikinkaari 9, University of Helsinki, FIN-00014 Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.chroma.2016.09.055DOI Listing
October 2016

Virus-host interplay in high salt environments.

Environ Microbiol Rep 2016 08 28;8(4):431-44. Epub 2016 Apr 28.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1111/1758-2229.12385DOI Listing
August 2016

K2 killer toxin-induced physiological changes in the yeast Saccharomyces cerevisiae.

FEMS Yeast Res 2016 Mar 26;16(2):fow003. Epub 2016 Jan 26.

Department of Biosciences, University of Helsinki, Viikinkaari 9, Helsinki 00014, Finland Institute of Biotechnology, University of Helsinki, Viikinkaari 9, Helsinki 00014, Finland

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http://dx.doi.org/10.1093/femsyr/fow003DOI Listing
March 2016

The complete genome of a viable archaeum isolated from 123-million-year-old rock salt.

Environ Microbiol 2016 Feb 18;18(2):565-79. Epub 2016 Jan 18.

Department of Biosciences, Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1111/1462-2920.13130DOI Listing
February 2016

Immuno-modulating properties of saliphenylhalamide, SNS-032, obatoclax, and gemcitabine.

Antiviral Res 2016 Feb 29;126:69-80. Epub 2015 Dec 29.

The Institute for Molecular Medicine Finland, FIMM, University of Helsinki, Finland; Department of Virology, University of Turku, Turku, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.antiviral.2015.12.011DOI Listing
February 2016

Buried Alive: Microbes from Ancient Halite.

Trends Microbiol 2016 Feb 13;24(2):148-160. Epub 2016 Jan 13.

Institute of Biotechnology and Department of Biosciences, University of Helsinki, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.tim.2015.12.002DOI Listing
February 2016

Monitoring Physiological Changes in Haloarchaeal Cell during Virus Release.

Viruses 2016 Feb 24;8(3):59. Epub 2016 Feb 24.

Department of Biosciences, Institute of Biotechnology, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland.

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http://dx.doi.org/10.3390/v8030059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810249PMC
February 2016

Pleolipoviridae, a newly proposed family comprising archaeal pleomorphic viruses with single-stranded or double-stranded DNA genomes.

Arch Virol 2016 Jan 12;161(1):249-56. Epub 2015 Oct 12.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, P.O. Box 56, Viikinkaari 9, 00014, Helsinki, Finland.

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http://dx.doi.org/10.1007/s00705-015-2613-xDOI Listing
January 2016

Identification and characterization of SNJ2, the first temperate pleolipovirus integrating into the genome of the SNJ1-lysogenic archaeal strain.

Mol Microbiol 2015 Dec 25;98(6):1002-20. Epub 2015 Sep 25.

State Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.

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http://dx.doi.org/10.1111/mmi.13204DOI Listing
December 2015

Haloarchaeal virus morphotypes.

Biochimie 2015 Nov 4;118:333-43. Epub 2015 Jul 4.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.biochi.2015.07.002DOI Listing
November 2015

Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

J Virol 2015 Nov 9;89(22):11681-91. Epub 2015 Sep 9.

Institut Pasteur, Unité de Biologie Moléculaire du Gène chez les Extrêmophiles, Département de Microbiologie, Paris, France

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http://dx.doi.org/10.1128/JVI.02270-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4645638PMC
November 2015

Cold-active bacteriophages from the Baltic Sea ice have diverse genomes and virus-host interactions.

Environ Microbiol 2015 Oct 20;17(10):3628-41. Epub 2014 Oct 20.

Department of Biosciences, University of Helsinki, P.O. Box 56, Viikinkaari 5, Helsinki, FI-00014, Finland.

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http://dx.doi.org/10.1111/1462-2920.12611DOI Listing
October 2015

Comparison of lipid-containing bacterial and archaeal viruses.

Adv Virus Res 2015 13;92:1-61. Epub 2015 Jan 13.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/bs.aivir.2014.11.005DOI Listing
October 2015

Insight into the Assembly of Viruses with Vertical Single β-barrel Major Capsid Proteins.

Structure 2015 Oct 27;23(10):1866-1877. Epub 2015 Aug 27.

Structural Biology Unit, CIC bioGUNE, CIBERehd, Bizkaia Technology Park, 48160 Derio, Spain; IKERBASQUE, Basque Foundation for Science, 48013 Bilbao, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.str.2015.07.015DOI Listing
October 2015

Haloviruses of archaea, bacteria, and eukaryotes.

Curr Opin Microbiol 2015 Jun 28;25:40-8. Epub 2015 Apr 28.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.mib.2015.04.001DOI Listing
June 2015

Archaeal viruses multiply: temporal screening in a solar saltern.

Viruses 2015 Apr 10;7(4):1902-26. Epub 2015 Apr 10.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Viikinkaari 5, 00014 Helsinki, Finland.

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http://dx.doi.org/10.3390/v7041902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411682PMC
April 2015

MAP kinase p38α regulates type III interferon (IFN-λ1) gene expression in human monocyte-derived dendritic cells in response to RNA stimulation.

J Leukoc Biol 2015 Feb 3;97(2):307-20. Epub 2014 Dec 3.

*Virology Unit, Department of Infectious Disease Surveillance and Control, National Institute for Health and Welfare, Helsinki, Finland; Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California, USA; Department of Microbiology, Immunology, and Molecular Genetics, Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, California, USA; Institute of Biotechnology and Department of Biosciences, University of Helsinki, Finland; and Department of Virology, University of Turku, Finland

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http://dx.doi.org/10.1189/jlb.2A0114-059RRDOI Listing
February 2015

Lemon-shaped halo archaeal virus His1 with uniform tail but variable capsid structure.

Proc Natl Acad Sci U S A 2015 Feb 9;112(8):2449-54. Epub 2015 Feb 9.

Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030; National Center for Macromolecular Imaging, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030; and

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http://dx.doi.org/10.1073/pnas.1425008112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345568PMC
February 2015

Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase.

Cell Rep 2015 Feb 12;10(6):983-992. Epub 2015 Feb 12.

Department of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Lorentzweg 1, 2628 CJ Delft, the Netherlands. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247150005
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http://dx.doi.org/10.1016/j.celrep.2015.01.031DOI Listing
February 2015

A structural model of the genome packaging process in a membrane-containing double stranded DNA virus.

PLoS Biol 2014 Dec 16;12(12):e1002024. Epub 2014 Dec 16.

Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, Texas, United States of America; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4267777PMC
December 2014

Archaeal viruses and bacteriophages: comparisons and contrasts.

Trends Microbiol 2014 Jun 16;22(6):334-44. Epub 2014 Mar 16.

Institute of Biotechnology and Department of Biosciences, P.O. Box 56, Viikinkaari 5, 00014 University of Helsinki, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.tim.2014.02.007DOI Listing
June 2014

Electrostatic interactions drive the self-assembly and the transcription activity of the Pseudomonas phage ϕ6 procapsid.

J Virol 2014 Jun 9;88(12):7112-6. Epub 2014 Apr 9.

Department of Biosciences, University of Helsinki, Vikki Biocenter, Helsinki, Finland

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http://dx.doi.org/10.1128/JVI.00467-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054352PMC
June 2014

Conservation of major and minor jelly-roll capsid proteins in Polinton (Maverick) transposons suggests that they are bona fide viruses.

Biol Direct 2014 Apr 29;9. Epub 2014 Apr 29.

Department of Microbiology, Institut Pasteur, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, Paris 75015, France.

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http://dx.doi.org/10.1186/1745-6150-9-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028283PMC
April 2014

Optical tweezers reveal force plateau and internal friction in PEG-induced DNA condensation.

Eur Biophys J 2014 Mar 30;43(2-3):71-9. Epub 2014 Jan 30.

Department of Physics, University of Helsinki, Gustaf Hällströmin katu 2, P.O. Box 64, 00014, Helsinki, Finland.

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http://dx.doi.org/10.1007/s00249-013-0941-xDOI Listing
March 2014

Unification of the globally distributed spindle-shaped viruses of the Archaea.

J Virol 2014 Feb 11;88(4):2354-8. Epub 2013 Dec 11.

Institut Pasteur, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, Département de Microbiologie, Paris, France.

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http://dx.doi.org/10.1128/JVI.02941-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3911535PMC
February 2014

Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution.

Nucleic Acids Res 2013 Nov 11;41(20):9396-410. Epub 2013 Aug 11.

Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Headington, Oxford OX3 7BN, UK, Institute for Molecular Medicine Finland (FIMM), University of Helsinki, 00290 Helsinki, Finland, Department of Environmental Research, Siauliai University, Vilniaus gatvė 88, 76285 Siauliai, Lithuania, Diamond Light Source Limited, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, UK, Department of Biosciences, University of Helsinki, Biocenter 2, PO Box 56, 00014 Helsinki, Finland, Institute of Biotechnology, University of Helsinki, Biocenter 2, PO Box 56, 00014 Helsinki, Finland and Astbury Centre for Structural Molecular Biology and School of Cellular and Molecular Biology, University of Leeds, Leeds LS2 9JT, UK.

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http://dx.doi.org/10.1093/nar/gkt713DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814363PMC
November 2013

Plate tectonics of virus shell assembly and reorganization in phage φ8, a distant relative of mammalian reoviruses.

Structure 2013 Aug 25;21(8):1384-95. Epub 2013 Jul 25.

Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Headington, Oxford OX3 7BN, UK.

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http://dx.doi.org/10.1016/j.str.2013.06.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737474PMC
August 2013

Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1.

Environ Microbiol 2013 Jun 19;15(6):1674-86. Epub 2012 Nov 19.

Institute of Biotechnology, University of Helsinki, PO Box 56, Viikinkaari 5, Helsinki 00014, Finland.

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http://dx.doi.org/10.1111/1462-2920.12030DOI Listing
June 2013

Clinical isolates of Pseudomonas aeruginosa from superficial skin infections have different physiological patterns.

FEMS Microbiol Lett 2013 Jun 22;343(2):183-9. Epub 2013 Apr 22.

Department of Biosciences, University of Helsinki, Helsinki, Finland; Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1111/1574-6968.12148DOI Listing
June 2013

Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story.

Proc Natl Acad Sci U S A 2013 Jun 3;110(26):10604-9. Epub 2013 Jun 3.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, FI-00014, Helsinki, Finland.

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http://dx.doi.org/10.1073/pnas.1303047110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3696780PMC
June 2013

Snapshot of haloarchaeal tailed virus genomes.

RNA Biol 2013 May 7;10(5):803-16. Epub 2013 Mar 7.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.4161/rna.24045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737338PMC
May 2013

Insights into head-tailed viruses infecting extremely halophilic archaea.

J Virol 2013 Mar 2;87(6):3248-60. Epub 2013 Jan 2.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://jvi.asm.org/cgi/doi/10.1128/JVI.03397-12
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http://dx.doi.org/10.1128/JVI.03397-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592136PMC
March 2013

Lipids of archaeal viruses.

Archaea 2012 20;2012:384919. Epub 2012 Sep 20.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, P.O. Box 56, Viikinkaari 5, 00014 Helsinki, Finland.

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http://dx.doi.org/10.1155/2012/384919DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461281PMC
February 2013

High-throughput purification of double-stranded RNA molecules using convective interaction media monolithic anion exchange columns.

J Chromatogr A 2013 Feb 29;1278:54-60. Epub 2012 Dec 29.

Department of Biosciences, University of Helsinki, Biocenter 2, P.O. Box 56, 00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1016/j.chroma.2012.12.050DOI Listing
February 2013

Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205.

Virology 2012 Dec 10;434(2):233-41. Epub 2012 Jul 10.

State Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.

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http://dx.doi.org/10.1016/j.virol.2012.05.036DOI Listing
December 2012

Monolithic ion exchange chromatographic methods for virus purification.

Virology 2012 Dec 22;434(2):271-7. Epub 2012 Oct 22.

Institute of Biotechnology and Department of Biosciences, University of Helsinki, Viikinkaari 5, 00014 Helsinki, Finland.

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http://dx.doi.org/10.1016/j.virol.2012.09.019DOI Listing
December 2012

Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Φ6.

J Virol 2012 Nov 29;86(22):12208-16. Epub 2012 Aug 29.

Department of Biosciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1128/JVI.01505-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486473PMC
November 2012

The C-terminal priming domain is strongly associated with the main body of bacteriophage ϕ6 RNA-dependent RNA polymerase.

Virology 2012 Oct 6;432(1):184-93. Epub 2012 Jul 6.

Department of Biosciences, University of Helsinki, Biocenter 2, 00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1016/j.virol.2012.05.035DOI Listing
October 2012

Structure unifies the viral universe.

Annu Rev Biochem 2012 5;81:795-822. Epub 2012 Apr 5.

Structural Biology Unit, CIC bioGUNE, CIBERehd, 48160 Derio, Spain.

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http://dx.doi.org/10.1146/annurev-biochem-060910-095130DOI Listing
August 2012

Virion architecture unifies globally distributed pleolipoviruses infecting halophilic archaea.

J Virol 2012 May 22;86(9):5067-79. Epub 2012 Feb 22.

Institute of Biotechnology and Department of Biosciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1128/JVI.06915-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3347350PMC
May 2012

Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid.

Mol Microbiol 2012 May 11;84(3):578-93. Epub 2012 Apr 11.

Department of Life Sciences, Ben Gurion University of the Negev, Beersheva 84105, Israel.

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http://dx.doi.org/10.1111/j.1365-2958.2012.08045.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422550PMC
May 2012

Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1.

Proc Natl Acad Sci U S A 2012 May 16;109(18):7079-84. Epub 2012 Apr 16.

Institute of Biotechnology and Department of Biosciences, Biocenter 2, University of Helsinki, FI-00014 Helsinki, Finland.

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http://dx.doi.org/10.1073/pnas.1120174109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3344969PMC
May 2012

Assembly of large icosahedral double-stranded RNA viruses.

Adv Exp Med Biol 2012 ;726:379-402

Department of Biosciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1007/978-1-4614-0980-9_17DOI Listing
April 2012

Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus ϕ6 from de novo initiation to elongation.

J Virol 2012 Mar 28;86(5):2837-49. Epub 2011 Dec 28.

Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.

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http://jvi.asm.org/cgi/doi/10.1128/JVI.05168-11
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http://dx.doi.org/10.1128/JVI.05168-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302264PMC
March 2012

Global network of specific virus-host interactions in hypersaline environments.

Environ Microbiol 2012 Feb 17;14(2):426-40. Epub 2011 Oct 17.

Institute of Biotechnology and Department of Biosciences, University of Helsinki, Viikinkaari 5, Helsinki, Finland.

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http://dx.doi.org/10.1111/j.1462-2920.2011.02603.xDOI Listing
February 2012

Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere.

Microbiol Mol Biol Rev 2011 Dec;75(4):610-35

Institut Pasteur, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, Département de Microbiologie, 25 rue du Dr. Roux, 75015 Paris, France.

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http://dx.doi.org/10.1128/MMBR.00011-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3232739PMC
December 2011

Innate immune responses in human monocyte-derived dendritic cells are highly dependent on the size and the 5' phosphorylation of RNA molecules.

J Immunol 2011 Aug 8;187(4):1713-21. Epub 2011 Jul 8.

National Key Laboratory of Virology and Modern Virology Research Center, College of Life Sciences, Wuhan University, Wuhan 430072, China.

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http://www.jimmunol.org/content/187/4/1713.full.pdf
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http://www.jimmunol.org/cgi/doi/10.4049/jimmunol.1100361
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http://dx.doi.org/10.4049/jimmunol.1100361DOI Listing
August 2011

Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly.

Curr Opin Virol 2011 Aug 2;1(2):118-24. Epub 2011 Jul 2.

Institut Pasteur, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, Department of Microbiology, Paris, France.

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http://dx.doi.org/10.1016/j.coviro.2011.06.001DOI Listing
August 2011

Virology. Revealing virus-host interplay.

Science 2011 Jul;333(6038):45-6

Institut Pasteur, Unité Biologie Moléculaire du Gène chez les Extrêmophiles, 75015 Paris, France.

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http://dx.doi.org/10.1126/science.1208557DOI Listing
July 2011

The N-terminus of the RNA polymerase from infectious pancreatic necrosis virus is the determinant of genome attachment.

PLoS Pathog 2011 Jun 23;7(6):e1002085. Epub 2011 Jun 23.

Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.

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https://dx.plos.org/10.1371/journal.ppat.1002085
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http://dx.doi.org/10.1371/journal.ppat.1002085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121795PMC
June 2011

The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements.

Mol Biol Evol 2010 Dec 25;27(12):2716-32. Epub 2010 Jun 25.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1093/molbev/msq161DOI Listing
December 2010

Order to the viral universe.

J Virol 2010 Dec 6;84(24):12476-9. Epub 2010 Oct 6.

Department of Biosciences and Institute of Biotechnology, Viikki Biocenter 2, P.O. Box 56 (Viikinkaari 5), University of Helsinki, FIN-00014 Helsinki, Finland.

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http://dx.doi.org/10.1128/JVI.01489-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3004316PMC
December 2010

Assessment of the activity of RND-type multidrug efflux pumps in Pseudomonas aeruginosa using tetraphenylphosphonium ions.

Int J Antimicrob Agents 2010 Sep 21;36(3):234-8. Epub 2010 May 21.

Department of Biochemistry and Biophysics, Vilnius University, Lithuania.

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http://dx.doi.org/10.1016/j.ijantimicag.2010.03.028DOI Listing
September 2010

Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into its Pseudoalteromonas host.

Virology 2010 Sep 19;405(1):120-8. Epub 2010 Jun 19.

Department of Biosciences and Institute of Biotechnology, University of Helsinki, Finland.

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http://dx.doi.org/10.1016/j.virol.2010.05.021DOI Listing
September 2010

In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa.

J Biol Chem 2010 Sep 20;285(38):29367-74. Epub 2010 Jul 20.

Institute of Biotechnology and Department of Biosciences, Biocenter 2, P.O. Box 56, University of Helsinki, FIN-00014 Helsinki, Finland.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M110.139121
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937969PMC
September 2010

Phospholipids act as secondary receptor during the entry of the enveloped, double-stranded RNA bacteriophage phi6.

J Gen Virol 2010 Aug 28;91(Pt 8):2116-2120. Epub 2010 Apr 28.

Department of Biosciences and Institute of Biotechnology, Biocenter 2, PO Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1099/vir.0.020305-0DOI Listing
August 2010

Protein A33 responsible for antibody-resistant spread of Vaccinia virus is homologous to C-type lectin-like proteins.

Virus Res 2010 Jul 17;151(1):97-101. Epub 2010 Mar 17.

Department of Biosciences and Institute of Biotechnology, Biocenter 2, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1016/j.virusres.2010.03.004DOI Listing
July 2010

New, closely related haloarchaeal viral elements with different nucleic Acid types.

J Virol 2010 Apr 20;84(7):3682-9. Epub 2010 Jan 20.

Department of Biosciences and Institute of Biotechnology, P.O. Box 56 (Viikinkaari 5), University of Helsinki, FIN-00014 Helsinki, Finland.

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http://dx.doi.org/10.1128/JVI.01879-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2838124PMC
April 2010

Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria.

J Mol Biol 2010 Mar 25;397(1):144-60. Epub 2010 Jan 25.

Department of Biological and Environmental Sciences and Institute of Biotechnology, Viikki Biocenter 2, PO Box 56 (Viikinkaari 5), University of Helsinki, FIN-00014 Helsinki, Finland.

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http://dx.doi.org/10.1016/j.jmb.2010.01.037DOI Listing
March 2010

The single-stranded DNA genome of novel archaeal virus halorubrum pleomorphic virus 1 is enclosed in the envelope decorated with glycoprotein spikes.

J Virol 2010 Jan 28;84(2):788-98. Epub 2009 Oct 28.

Institute of Biotechnology and Department of Biological and Environmental Sciences, University of Helsinki, P.O. Box 56, Viikinkaari 5, 00014 Helsinki, Finland.

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http://dx.doi.org/10.1128/JVI.01347-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798366PMC
January 2010

The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaea.

J Virol 2009 Sep 8;83(18):9388-97. Epub 2009 Jul 8.

Department of Biological and Environmental Science and Nanoscience Center, University of Jyväskylä, Finland.

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http://dx.doi.org/10.1128/JVI.00869-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2738223PMC
September 2009

qiRNA is a new type of small interfering RNA induced by DNA damage.

Nature 2009 May;459(7244):274-7

Department of Physiology, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, Texas 75390, USA.

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http://dx.doi.org/10.1038/nature08041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859615PMC
May 2009

Geminiviruses: a tale of a plasmid becoming a virus.

BMC Evol Biol 2009 May 21;9:112. Epub 2009 May 21.

Department of Biological and Environmental Sciences and Institute of Biotechnology, Biocenter 2, PO Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2148-9-112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702318PMC
May 2009

An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope.

Mol Microbiol 2009 Apr 4;72(2):307-19. Epub 2009 Mar 4.

Institute of Biotechnology and Department of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1111/j.1365-2958.2009.06642.xDOI Listing
April 2009

Does the evolution of viral polymerases reflect the origin and evolution of viruses?

Nat Rev Microbiol 2009 Mar 9;7(3):250; author reply 250. Epub 2009 Feb 9.

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http://dx.doi.org/10.1038/nrmicro2030-c1DOI Listing
March 2009

Virus-host interactions in environments with a wide range of ionic strengths.

Environ Microbiol Rep 2009 Feb;1(1):71-7

Department of Biological and Environmental Sciences and Institute of Biotechnology, Biocenter 2, P.O. Box 56 (Viikinkaari 5), FIN-00014, University of Helsinki, Finland.

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http://dx.doi.org/10.1111/j.1758-2229.2008.00007.xDOI Listing
February 2009