Denise M Wolf

, , and , George Mason University, Manassas, VA; , , , , , , , and , University of California, San Francisco, San Francisco, CA; , , and , Netherlands Cancer Institute, Amsterdam, the Netherlands; , University of Pennsylvania, Philadelphia, PA; , University of Texas MD Anderson Cancer Center, Houston; , Berry Consultants, Austin, TX; , University of Minnesota, Minneapolis; and , Mayo Clinic, Rochester, MN.

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August 2018

A natural killer-dendritic cell axis defines checkpoint therapy-responsive tumor microenvironments.

Nat Med 2018 08 25;24(8):1178-1191. Epub 2018 Jun 25.

Department of Pathology, University of California San Francisco, San Francisco, CA, USA.

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August 2018

Circulating Tumor Cells in Breast Cancer Patients Treated by Neoadjuvant Chemotherapy: A Meta-analysis.

Authors:

François-Clément Bidard Stefan Michiels Sabine Riethdorf Volkmar Mueller Laura J Esserman Anthony Lucci Bjørn Naume Jun Horiguchi Rafael Gisbert-Criado Stefan Sleijfer Masakazu Toi Jose A Garcia-Saenz Andreas Hartkopf Daniele Generali Françoise Rothé Jeffrey Smerage Laura Muinelo-Romay Justin Stebbing Patrice Viens Mark Jesus M Magbanua Carolyn S Hall Olav Engebraaten Daisuke Takata José Vidal-Martínez Wendy Onstenk Noriyoshi Fujisawa Eduardo Diaz-Rubio Florin-Andrei Taran Maria Rosa Cappelletti Michail Ignatiadis Charlotte Proudhon Denise M Wolf Jessica B Bauldry Elin Borgen Rin Nagaoka Vicente Carañana Jaco Kraan Marisa Maestro Sara Yvonne Brucker Karsten Weber Fabien Reyal Dominic Amara Mandar G Karhade Randi R Mathiesen Hideaki Tokiniwa Antonio Llombart-Cussac Alessandra Meddis Paul Blanche Koenraad d'Hollander Paul Cottu John W Park Sibylle Loibl Aurélien Latouche Jean-Yves Pierga Klaus Pantel

J Natl Cancer Inst 2018 06;110(6):560-567

Universitätsklinikum Hamburg-Eppendorf, Hamburg, Germany.

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June 2018

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.

Authors:

Jianfang Liu Tara Lichtenberg Katherine A Hoadley Laila M Poisson Alexander J Lazar Andrew D Cherniack Albert J Kovatich Christopher C Benz Douglas A Levine Adrian V Lee Larsson Omberg Denise M Wolf Craig D Shriver Vesteinn Thorsson Hai Hu

Cell 2018 04;173(2):400-416.e11

Chan Soon-Shiong Institute of Molecular Medicine at Windber, Windber, PA 15963, USA. Electronic address:

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April 2018

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer.

Cell 2018 04;173(2):291-304.e6

Van Andel Research Institute, Grand Rapids, MI 49503, USA. Electronic address:

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April 2018

Expanded Genomic Profiling of Circulating Tumor Cells in Metastatic Breast Cancer Patients to Assess Biomarker Status and Biology Over Time (CALGB 40502 and CALGB 40503, Alliance).

Authors:

Mark Jesus M Magbanua Hope S Rugo Denise M Wolf Louai Hauranieh Ritu Roy Praveen Pendyala Eduardo V Sosa Janet H Scott Jin Sun Lee Brandelyn Pitcher Terry Hyslop William T Barry Steven J Isakoff Maura Dickler Laura Van't Veer John W Park

Clin Cancer Res 2018 03 8;24(6):1486-1499. Epub 2018 Jan 8.

Division of Hematology/Oncology, University of California at San Francisco, San Francisco, California.

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March 2018

DNA repair deficiency biomarkers and the 70-gene ultra-high risk signature as predictors of veliparib/carboplatin response in the I-SPY 2 breast cancer trial.

NPJ Breast Cancer 2017 25;3:31. Epub 2017 Aug 25.

Department of Laboratory Medicine, University of California, San Francisco, San Francisco, CA 94115 USA.

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August 2017

Heterogeneous drug penetrance of veliparib and carboplatin measured in triple negative breast tumors.

Breast Cancer Res 2017 Sep 11;19(1):107. Epub 2017 Sep 11.

Department of Laboratory Medicine, UCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.

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September 2017

The BRCA1ness signature is associated significantly with response to PARP inhibitor treatment versus control in the I-SPY 2 randomized neoadjuvant setting.

Authors:

Tesa M Severson Denise M Wolf Christina Yau Justine Peeters Diederik Wehkam Philip C Schouten Suet-Feung Chin Ian J Majewski Magali Michaut Astrid Bosma Bernard Pereira Tycho Bismeijer Lodewyk Wessels Carlos Caldas René Bernards Iris M Simon Annuska M Glas Sabine Linn Laura van 't Veer

Breast Cancer Res 2017 Aug 25;19(1):99. Epub 2017 Aug 25.

Agendia NV, Amsterdam, The Netherlands.

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August 2017

Co-expression modules identified from published immune signatures reveal five distinct immune subtypes in breast cancer.

Authors:

Dominic Amara Denise M Wolf Laura van 't Veer Laura Esserman Michael Campbell Christina Yau

Breast Cancer Res Treat 2017 01 4;161(1):41-50. Epub 2016 Nov 4.

Department of Surgery, Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.

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January 2017

Critical Role for CD103(+)/CD141(+) Dendritic Cells Bearing CCR7 for Tumor Antigen Trafficking and Priming of T Cell Immunity in Melanoma.

Authors:

Edward W Roberts Miranda L Broz Mikhail Binnewies Mark B Headley Amanda E Nelson Denise M Wolf Tsuneyasu Kaisho Dusan Bogunovic Nina Bhardwaj Matthew F Krummel

Cancer Cell 2016 08 14;30(2):324-336. Epub 2016 Jul 14.

Department of Pathology, University of California San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143-0511, USA. Electronic address:

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August 2016

An Atlas of the Human Kinome Reveals the Mutational Landscape Underlying Dysregulated Phosphorylation Cascades in Cancer.

Authors:

Aleksandra Olow Zhongzhong Chen R Hannes Niedner Denise M Wolf Christina Yau Aleksandr Pankov Evelyn Pei Rong Lee Lamorna Brown-Swigart Laura J van 't Veer Jean-Philippe Coppé

Cancer Res 2016 04 26;76(7):1733-45. Epub 2016 Feb 26.

Department of Laboratory Medicine, Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, California.

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April 2016

A phase 1b study of the Akt-inhibitor MK-2206 in combination with weekly paclitaxel and trastuzumab in patients with advanced HER2-amplified solid tumor malignancies.

Authors:

Amy Jo Chien Alyson Cockerill Craig Fancourt Emmett Schmidt Mark M Moasser Hope S Rugo Michelle E Melisko Andrew H Ko R Katie Kelley W Michael Korn Laura J Esserman Laura van't Veer Christina Yau Denise M Wolf Pamela N Munster

Breast Cancer Res Treat 2016 Feb 13;155(3):521-30. Epub 2016 Feb 13.

Department of Medicine, Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, 1600 Divisadero St, Box 1710, San Francisco, CA, 94115, USA.

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February 2016

Serial expression analysis of breast tumors during neoadjuvant chemotherapy reveals changes in cell cycle and immune pathways associated with recurrence and response.

Authors:

Mark Jesus M Magbanua Denise M Wolf Christina Yau Sarah E Davis Julia Crothers Alfred Au Christopher M Haqq Chad Livasy Hope S Rugo Laura Esserman John W Park Laura J van 't Veer

Breast Cancer Res 2015 May 29;17:73. Epub 2015 May 29.

Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA, USA.

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May 2015

Dissecting the Tumor Myeloid Compartment Reveals Rare Activating Antigen-Presenting Cells Critical for T Cell Immunity.

Authors:

Miranda L Broz Mikhail Binnewies Bijan Boldajipour Amanda E Nelson Joshua L Pollack David J Erle Andrea Barczak Michael D Rosenblum Adil Daud Diane L Barber Sebastian Amigorena Laura J Van't Veer Anne I Sperling Denise M Wolf Matthew F Krummel

Cancer Cell 2014 Dec 8;26(6):938. Epub 2014 Dec 8.

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December 2014

Dissecting the tumor myeloid compartment reveals rare activating antigen-presenting cells critical for T cell immunity.

Authors:

Miranda L Broz Mikhail Binnewies Bijan Boldajipour Amanda E Nelson Joshua L Pollack David J Erle Andrea Barczak Michael D Rosenblum Adil Daud Diane L Barber Sebastian Amigorena Laura J Van't Veer Anne I Sperling Denise M Wolf Matthew F Krummel

Cancer Cell 2014 Nov 16;26(5):638-52. Epub 2014 Oct 16.

Department of Pathology, University of California San Francisco, San Francisco, CA 94143, USA. Electronic address:

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November 2014

Expression profiling of circulating tumor cells in metastatic breast cancer.

Authors:

Julie E Lang Janet H Scott Denise M Wolf Petr Novak Vasu Punj Mark Jesus M Magbanua Weizhu Zhu Neal Mineyev Christopher M Haqq Julia R Crothers Laura J Esserman Debasish Tripathy Laura van 't Veer John W Park

Breast Cancer Res Treat 2015 Jan 29;149(1):121-31. Epub 2014 Nov 29.

Division of Breast and Soft Tissue Surgery, Department of Surgery, Norris Comprehensive Cancer Center (NCCC), University of Southern California (USC), 1510 San Pablo Street Suite 412, Los Angeles, CA, 90033-0800, USA,

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January 2015

Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin.

Cell 2014 Aug 7;158(4):929-944. Epub 2014 Aug 7.

Department of Biomolecular Engineering, Center for Biomolecular Sciences and Engineering, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA 95064, USA. Electronic address:

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August 2014

Gene co-expression modules as clinically relevant hallmarks of breast cancer diversity.

Authors:

Denise M Wolf Marc E Lenburg Christina Yau Aaron Boudreau Laura J van 't Veer

PLoS One 2014 7;9(2):e88309. Epub 2014 Feb 7.

Department of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America.

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May 2015

A gene signature for late distant metastasis in breast cancer identifies a potential mechanism of late recurrences.

Authors:

Lorenza Mittempergher Mahasti Saghatchian Denise M Wolf Stefan Michiels Sander Canisius Philippe Dessen Suzette Delaloge Vladimir Lazar Stephen C Benz Thomas Tursz René Bernards Laura J van't Veer

Mol Oncol 2013 Oct 17;7(5):987-99. Epub 2013 Jul 17.

The Netherlands Cancer Institute, Division of Molecular Carcinogenesis, Amsterdam, The Netherlands.

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October 2013

Xenografts faithfully recapitulate breast cancer-specific gene expression patterns of parent primary breast tumors.

Authors:

Laura A Petrillo Denise M Wolf Ann M Kapoun Nicholas J Wang Andrea Barczak Yuanyuan Xiao Hasan Korkaya Frederick Baehner John Lewicki Max Wicha John W Park Paul T Spellman Joe W Gray Laura Van't Veer Laura J Esserman

Breast Cancer Res Treat 2012 Oct 2;135(3):913-22. Epub 2012 Sep 2.

Department of Surgery, University of California, San Francisco, CA, USA.

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October 2012

Cross-platform pathway-based analysis identifies markers of response to the PARP inhibitor olaparib.

Authors:

Anneleen Daemen Denise M Wolf James E Korkola Obi L Griffith Jessica R Frankum Rachel Brough Lakshmi R Jakkula Nicholas J Wang Rachael Natrajan Jorge S Reis-Filho Christopher J Lord Alan Ashworth Paul T Spellman Joe W Gray Laura J van't Veer

Breast Cancer Res Treat 2012 Sep 9;135(2):505-17. Epub 2012 Aug 9.

Laboratory Medicine, University of California San Francisco, 2340 Sutter Street Box 0808, San Francisco, CA 94115, USA.

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September 2012

Subtype and pathway specific responses to anticancer compounds in breast cancer.

Proc Natl Acad Sci U S A 2012 Feb 14;109(8):2724-9. Epub 2011 Oct 14.

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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February 2012

Complexity in bacterial cell-cell communication: quorum signal integration and subpopulation signaling in the Bacillus subtilis phosphorelay.

Authors:

Ilka B Bischofs Joshua A Hug Aiwen W Liu Denise M Wolf Adam P Arkin

Proc Natl Acad Sci U S A 2009 Apr 20;106(16):6459-64. Epub 2009 Apr 20.

Department of Bioengineering, University of California, 311 Hildebrand Hall, MC 5230, Berkeley, CA 94704-3224, USA.

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April 2009

Modularity of stress response evolution.

Authors:

Amoolya H Singh Denise M Wolf Peggy Wang Adam P Arkin

Proc Natl Acad Sci U S A 2008 May 21;105(21):7500-5. Epub 2008 May 21.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, MS 9-144, Berkeley, CA 94720, USA.

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May 2008

Memory in microbes: quantifying history-dependent behavior in a bacterium.

Authors:

Denise M Wolf Lisa Fontaine-Bodin Ilka Bischofs Gavin Price Jay Keasling Adam P Arkin

PLoS One 2008 Feb 27;3(2):e1700. Epub 2008 Feb 27.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

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February 2008

A microbial modified prisoner's dilemma game: how frequency-dependent selection can lead to random phase variation.

Authors:

Denise M Wolf Vijay V Vazirani Adam P Arkin

J Theor Biol 2005 May;234(2):255-62

Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.

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May 2005

Diversity in times of adversity: probabilistic strategies in microbial survival games.

Authors:

Denise M Wolf Vijay V Vazirani Adam P Arkin

J Theor Biol 2005 May 24;234(2):227-53. Epub 2005 Jan 24.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.

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May 2005

The Bacillus subtilis sin operon: an evolvable network motif.

Authors:

Christopher A Voigt Denise M Wolf Adam P Arkin

Genetics 2005 Mar 30;169(3):1187-202. Epub 2004 Sep 30.

Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

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March 2005

Motifs, modules and games in bacteria.

Authors:

Denise M Wolf Adam P Arkin

Curr Opin Microbiol 2003 Apr;6(2):125-34

Department of Bioengineering, University of California, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Howard Hughes Medical Institute, 1 Cyclotron Road, MS 3-144, Berkeley, CA 94720, USA.

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April 2003

Control, exploitation and tolerance of intracellular noise.

Authors:

Christopher V Rao Denise M Wolf Adam P Arkin

Nature 2002 Nov;420(6912):231-7

Department of Bioengineering, University of California, Berkeley, California 94720, USA.

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November 2002

Fifteen minutes of fim: control of type 1 pili expression in E. coli.

Authors:

Denise M Wolf Adam P Arkin

OMICS 2002 ;6(1):91-114

Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

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July 2002

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