Publications

RNAcompete-S: Combined RNA sequence/structure preferences for RNA binding proteins derived from a single-step in vitro selection.
Methods 2017 Aug 24;126:18-28. Epub 2017 Jun 24.
Department of Molecular Genetics, University of Toronto, Toronto M5S 1A8, Canada; Donnelly Centre, University of Toronto, Toronto M5S 3E1, Canada; Department of Computer Science, University of Toronto, Toronto M5S 2E4, Canada; Department of Electrical and Computer Engineering, University of Toronto, Toronto M5S 3G4, Canada. Electronic address:

RNAcompete methodology and application to determine sequence preferences of unconventional RNA-binding proteins.
Methods 2017 Apr 10;118-119:3-15. Epub 2016 Dec 10.
Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada; Department of Computer Science, University of Toronto, Toronto, Ontario M5S 3G4, Canada; Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada. Electronic address:


Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians.
Elife 2016 Aug 9;5. Epub 2016 Aug 9.
Systems Biology of Gene Regulatory Elements, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany.

The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation.
Cell Rep 2015 Nov 29;13(6):1206-1220. Epub 2015 Oct 29.
Laboratory for RNA Biology, Biochemistry Center Regensburg, University of Regensburg, 93053 Regensburg, Germany. Electronic address:


Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes.
Proc Natl Acad Sci U S A 2014 Feb 3;111(7):2542-7. Epub 2014 Feb 3.
Department of Molecular Genetics, Department of Computer Science, Donnelly Centre, University of Toronto, Toronto, ON, Canada M5S 3E1.


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