Deanna M Church

Deanna M Church

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Deanna M Church

Deanna M Church

Publications by authors named "Deanna M Church"

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The emergent landscape of the mouse gut endoderm at single-cell resolution.

Nature 2019 May 8;569(7756):361-367. Epub 2019 Apr 8.

Computational & Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

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http://dx.doi.org/10.1038/s41586-019-1127-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6724221PMC
May 2019

Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Nat Commun 2019 04 16;10(1):1784. Epub 2019 Apr 16.

The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.

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http://www.nature.com/articles/s41467-018-08148-z
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http://dx.doi.org/10.1038/s41467-018-08148-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467913PMC
April 2019

Genomes for all.

Authors:
Deanna M Church

Nat Biotechnol 2018 09;36(9):815-816

10x Genomics, Pleasanton, California, USA.

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http://dx.doi.org/10.1038/nbt.4244DOI Listing
September 2018

Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly.

Cell 2018 02;172(5):897-909.e21

Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA 02114, USA; Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA; Program in Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute, Cambridge, MA 02142, USA; The Collaborative Center for X-linked Dystonia-Parkinsonism, Massachusetts General Hospital, Charlestown, MA 02129, USA; Departments of Psychiatry and Pathology, Massachusetts General Hospital, Boston, MA 02114, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183015
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http://dx.doi.org/10.1016/j.cell.2018.02.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831509PMC
February 2018

Direct determination of diploid genome sequences.

Genome Res 2017 05 5;27(5):757-767. Epub 2017 Apr 5.

10x Genomics, Pleasanton, California 94566, USA.

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http://dx.doi.org/10.1101/gr.214874.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411770PMC
May 2017

Alternate-locus aware variant calling in whole genome sequencing.

Genome Med 2016 12 13;8(1):130. Epub 2016 Dec 13.

Institute for Medical and Human Genetics, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, Berlin, 13353, Germany.

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http://dx.doi.org/10.1186/s13073-016-0383-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5155401PMC
December 2016

Assembly: a resource for assembled genomes at NCBI.

Nucleic Acids Res 2016 Jan 17;44(D1):D73-80. Epub 2015 Nov 17.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkv1226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702866PMC
January 2016

ClinVar: public archive of relationships among sequence variation and human phenotype.

Nucleic Acids Res 2014 Jan 14;42(Database issue):D980-5. Epub 2013 Nov 14.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkt1113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965032PMC
January 2014

Clone DB: an integrated NCBI resource for clone-associated data.

Nucleic Acids Res 2013 Jan 27;41(Database issue):D1070-8. Epub 2012 Nov 27.

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/nar/gks1164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531087PMC
January 2013

Online resources for genomic structural variation.

Methods Mol Biol 2012 ;838:273-89

NCBI, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1007/978-1-61779-507-7_13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3804003PMC
April 2012

Back to Bermuda: how is science best served?

Genome Biol 2009 24;10(4):105. Epub 2009 Apr 24.

NCBI/NLM/NIH 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1186/gb-2009-10-4-105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688919PMC
September 2009

Mouse segmental duplication and copy number variation.

Nat Genet 2008 Jul 22;40(7):909-14. Epub 2008 May 22.

Department of Genome Sciences, University of Washington, 1705 NE Pacific Street, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1038/ng.172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2574762PMC
July 2008

Candidate single nucleotide polymorphism selection using publicly available tools: a guide for epidemiologists.

Am J Epidemiol 2006 Oct 21;164(8):794-804. Epub 2006 Aug 21.

Radiation Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20892-7238, USA.

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http://dx.doi.org/10.1093/aje/kwj269DOI Listing
October 2006

Shotgun sequence assembly and recent segmental duplications within the human genome.

Nature 2004 Oct;431(7011):927-30

Department of Genome Sciences, University of Washington School of Medicine, 1705 NE Pacific Street, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1038/nature03062DOI Listing
October 2004

Analysis of segmental duplications and genome assembly in the mouse.

Genome Res 2004 May;14(5):789-801

Department of Genetics, Center for Computational Genomics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 4410, USA.

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http://dx.doi.org/10.1101/gr.2238404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC479105PMC
May 2004

Database resources of the National Center for Biotechnology Information: update.

Nucleic Acids Res 2004 Jan;32(Database issue):D35-40

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://dx.doi.org/10.1093/nar/gkh073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308807PMC
January 2004

Database resources of the National Center for Biotechnology.

Nucleic Acids Res 2003 Jan;31(1):28-33

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165480PMC
http://dx.doi.org/10.1093/nar/gkg033DOI Listing
January 2003

Initial sequencing and comparative analysis of the mouse genome.

Authors:
Robert H Waterston Kerstin Lindblad-Toh Ewan Birney Jane Rogers Josep F Abril Pankaj Agarwal Richa Agarwala Rachel Ainscough Marina Alexandersson Peter An Stylianos E Antonarakis John Attwood Robert Baertsch Jonathon Bailey Karen Barlow Stephan Beck Eric Berry Bruce Birren Toby Bloom Peer Bork Marc Botcherby Nicolas Bray Michael R Brent Daniel G Brown Stephen D Brown Carol Bult John Burton Jonathan Butler Robert D Campbell Piero Carninci Simon Cawley Francesca Chiaromonte Asif T Chinwalla Deanna M Church Michele Clamp Christopher Clee Francis S Collins Lisa L Cook Richard R Copley Alan Coulson Olivier Couronne James Cuff Val Curwen Tim Cutts Mark Daly Robert David Joy Davies Kimberly D Delehaunty Justin Deri Emmanouil T Dermitzakis Colin Dewey Nicholas J Dickens Mark Diekhans Sheila Dodge Inna Dubchak Diane M Dunn Sean R Eddy Laura Elnitski Richard D Emes Pallavi Eswara Eduardo Eyras Adam Felsenfeld Ginger A Fewell Paul Flicek Karen Foley Wayne N Frankel Lucinda A Fulton Robert S Fulton Terrence S Furey Diane Gage Richard A Gibbs Gustavo Glusman Sante Gnerre Nick Goldman Leo Goodstadt Darren Grafham Tina A Graves Eric D Green Simon Gregory Roderic Guigó Mark Guyer Ross C Hardison David Haussler Yoshihide Hayashizaki LaDeana W Hillier Angela Hinrichs Wratko Hlavina Timothy Holzer Fan Hsu Axin Hua Tim Hubbard Adrienne Hunt Ian Jackson David B Jaffe L Steven Johnson Matthew Jones Thomas A Jones Ann Joy Michael Kamal Elinor K Karlsson Donna Karolchik Arkadiusz Kasprzyk Jun Kawai Evan Keibler Cristyn Kells W James Kent Andrew Kirby Diana L Kolbe Ian Korf Raju S Kucherlapati Edward J Kulbokas David Kulp Tom Landers J P Leger Steven Leonard Ivica Letunic Rosie Levine Jia Li Ming Li Christine Lloyd Susan Lucas Bin Ma Donna R Maglott Elaine R Mardis Lucy Matthews Evan Mauceli John H Mayer Megan McCarthy W Richard McCombie Stuart McLaren Kirsten McLay John D McPherson Jim Meldrim Beverley Meredith Jill P Mesirov Webb Miller Tracie L Miner Emmanuel Mongin Kate T Montgomery Michael Morgan Richard Mott James C Mullikin Donna M Muzny William E Nash Joanne O Nelson Michael N Nhan Robert Nicol Zemin Ning Chad Nusbaum Michael J O'Connor Yasushi Okazaki Karen Oliver Emma Overton-Larty Lior Pachter Genís Parra Kymberlie H Pepin Jane Peterson Pavel Pevzner Robert Plumb Craig S Pohl Alex Poliakov Tracy C Ponce Chris P Ponting Simon Potter Michael Quail Alexandre Reymond Bruce A Roe Krishna M Roskin Edward M Rubin Alistair G Rust Ralph Santos Victor Sapojnikov Brian Schultz Jörg Schultz Matthias S Schwartz Scott Schwartz Carol Scott Steven Seaman Steve Searle Ted Sharpe Andrew Sheridan Ratna Shownkeen Sarah Sims Jonathan B Singer Guy Slater Arian Smit Douglas R Smith Brian Spencer Arne Stabenau Nicole Stange-Thomann Charles Sugnet Mikita Suyama Glenn Tesler Johanna Thompson David Torrents Evanne Trevaskis John Tromp Catherine Ucla Abel Ureta-Vidal Jade P Vinson Andrew C Von Niederhausern Claire M Wade Melanie Wall Ryan J Weber Robert B Weiss Michael C Wendl Anthony P West Kris Wetterstrand Raymond Wheeler Simon Whelan Jamey Wierzbowski David Willey Sophie Williams Richard K Wilson Eitan Winter Kim C Worley Dudley Wyman Shan Yang Shiaw-Pyng Yang Evgeny M Zdobnov Michael C Zody Eric S Lander

Nature 2002 Dec;420(6915):520-62

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01262DOI Listing
December 2002

Database resources of the National Center for Biotechnology Information: 2002 update.

Nucleic Acids Res 2002 Jan;30(1):13-6

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99094PMC
http://dx.doi.org/10.1093/nar/30.1.13DOI Listing
January 2002