Dean Barratt

Dean Barratt

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Dean Barratt

Dean Barratt

Publications by authors named "Dean Barratt"

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Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration.

Med Image Anal 2019 Sep 11;58:101558. Epub 2019 Sep 11.

Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.

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http://dx.doi.org/10.1016/j.media.2019.101558DOI Listing
September 2019

The SmartTarget Biopsy Trial: A Prospective, Within-person Randomised, Blinded Trial Comparing the Accuracy of Visual-registration and Magnetic Resonance Imaging/Ultrasound Image-fusion Targeted Biopsies for Prostate Cancer Risk Stratification.

Eur Urol 2019 05 6;75(5):733-740. Epub 2018 Dec 6.

Research Department of Urology, Division of Surgery and Interventional Science, Faculty of Medicine, University College London, London, UK; Department of Urology, UCLH NHS Foundation Trust, London, UK; Centre for Medical Imaging, Division of Medicine, Faculty of Medicine, University College London, London, UK; Division of Surgery, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, London, UK; Imperial Urology, Imperial College Healthcare NHS Trust, London, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03022838183059
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http://dx.doi.org/10.1016/j.eururo.2018.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6469539PMC
May 2019

Integration of spatial information in convolutional neural networks for automatic segmentation of intraoperative transrectal ultrasound images.

J Med Imaging (Bellingham) 2019 Jan 21;6(1):011003. Epub 2018 Aug 21.

University College London, UCL Center for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, London, United Kingdom.

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http://dx.doi.org/10.1117/1.JMI.6.1.011003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6102407PMC
January 2019

Accuracy of Transperineal Targeted Prostate Biopsies, Visual Estimation and Image Fusion in Men Needing Repeat Biopsy in the PICTURE Trial.

J Urol 2018 12 11;200(6):1227-1234. Epub 2018 Jul 11.

Division of Surgery and Interventional Science, Faculty of Medical Sciences, University College London, London, United Kingdom; Division of Surgery, Department of Surgery and Cancer, Faculty of Medicine, Imperial College London, London, United Kingdom; Imperial Urology, Charing Cross Hospital, Imperial College Healthcare NHS Trust, London, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.juro.2018.07.001DOI Listing
December 2018

Weakly-supervised convolutional neural networks for multimodal image registration.

Med Image Anal 2018 10 4;49:1-13. Epub 2018 Jul 4.

Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Wellcome / EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.

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http://dx.doi.org/10.1016/j.media.2018.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6742510PMC
October 2018

A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images.

Int J Comput Assist Radiol Surg 2018 Aug 2;13(8):1177-1186. Epub 2018 Jun 2.

Wellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.

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http://dx.doi.org/10.1007/s11548-018-1799-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6096745PMC
August 2018

NiftyNet: a deep-learning platform for medical imaging.

Comput Methods Programs Biomed 2018 May 31;158:113-122. Epub 2018 Jan 31.

Wellcome / EPSRC Centre for Interventional and Surgical Sciences (WEISS), University College London, UK.

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http://dx.doi.org/10.1016/j.cmpb.2018.01.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869052PMC
May 2018

Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalizing neural network.

J Med Imaging (Bellingham) 2018 Apr 10;5(2):021206. Epub 2018 Jan 10.

University College London, Centre for Medical Image Computing, London, United Kingdom.

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http://dx.doi.org/10.1117/1.JMI.5.2.021206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5762003PMC
April 2018

Technical Note: Error metrics for estimating the accuracy of needle/instrument placement during transperineal magnetic resonance/ultrasound-guided prostate interventions.

Med Phys 2018 Apr 9;45(4):1408-1414. Epub 2018 Mar 9.

Department of Medical Physics & Biomedical Engineering, UCL Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK.

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http://dx.doi.org/10.1002/mp.12814DOI Listing
April 2018

Designing image segmentation studies: Statistical power, sample size and reference standard quality.

Med Image Anal 2017 Dec 22;42:44-59. Epub 2017 Jul 22.

Department of Medical Physics and Biomedical Engineering, University College London, London, United Kingdom.

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http://dx.doi.org/10.1016/j.media.2017.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5666910PMC
December 2017

A hybrid patient-specific biomechanical model based image registration method for the motion estimation of lungs.

Med Image Anal 2017 Jul 19;39:87-100. Epub 2017 Apr 19.

Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.media.2017.04.003DOI Listing
July 2017

Locally rigid, vessel-based registration for laparoscopic liver surgery.

Int J Comput Assist Radiol Surg 2015 Dec 20;10(12):1951-61. Epub 2015 Jun 20.

Centre For Medical Image Computing, Engineering Front Building, University College London, Malet Place, London, UK.

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http://dx.doi.org/10.1007/s11548-015-1236-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642598PMC
December 2015

Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration.

Med Image Anal 2015 Dec 31;26(1):332-44. Epub 2015 Oct 31.

Centre for Medical Image Computing, University College London, London, UK.

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http://dx.doi.org/10.1016/j.media.2015.10.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686007PMC
December 2015

Biomechanical modeling constrained surface-based image registration for prostate MR guided TRUS biopsy.

Med Phys 2015 May;42(5):2470-81

Department of Radiology and Nuclear Medicine, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands.

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http://dx.doi.org/10.1118/1.4917481DOI Listing
May 2015

Information Processing in Computer-Assisted Interventions: 4th International Conference, 2013.

Int J Comput Assist Radiol Surg 2014 Sep;9(5):755-7

UCL Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, Floor 2, Malet Place Engineering Building, Gower Street, London, WC1E 6BT, UK,

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http://dx.doi.org/10.1007/s11548-014-1117-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4181731PMC
September 2014

Prostate cancer risk inflation as a consequence of image-targeted biopsy of the prostate: a computer simulation study.

Eur Urol 2014 Mar 3;65(3):628-34. Epub 2013 Jan 3.

Department of Urology, University College London Hospital Trust, London, UK; Division of Surgery and Interventional Science, University College London, London, UK.

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https://linkinghub.elsevier.com/retrieve/pii/S03022838120158
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http://dx.doi.org/10.1016/j.eururo.2012.12.057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925797PMC
March 2014

Image-directed, tissue-preserving focal therapy of prostate cancer: a feasibility study of a novel deformable magnetic resonance-ultrasound (MR-US) registration system.

BJU Int 2013 Sep 2;112(5):594-601. Epub 2013 Jul 2.

Department of Urology, University College London Hospitals NHS Foundation Trust; Division of Surgery and Interventional Sciences, Univeristy College London, London, UK.

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http://dx.doi.org/10.1111/bju.12223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3920644PMC
September 2013

A novel Bayesian respiratory motion model to estimate and resolve uncertainty in image-guided cardiac interventions.

Med Image Anal 2013 May 18;17(4):488-502. Epub 2013 Feb 18.

Division of Imaging Sciences and Biomedical Engineering, King's College London, King's Health Partners, St. Thomas' Hospital, London SE1 7EH, United Kingdom.

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http://dx.doi.org/10.1016/j.media.2013.01.007DOI Listing
May 2013

Computational models in image guided interventions.

Conf Proc IEEE Eng Med Biol Soc 2005 ;7:7246-9

D.J.Hawkes is the Director of the Centre for Medical Image Computing, University College London, Gower Street, London, WC1E 6BT. (email:

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http://ieeexplore.ieee.org/document/1616183/
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http://dx.doi.org/10.1109/IEMBS.2005.1616183DOI Listing
October 2012

The accuracy of different biopsy strategies for the detection of clinically important prostate cancer: a computer simulation.

J Urol 2012 Sep 21;188(3):974-80. Epub 2012 Jul 21.

Service d'Urologie, Université Lille Nord de France, Institut national de la santé et de la recherche médicale, Loos, France.

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http://dx.doi.org/10.1016/j.juro.2012.04.104DOI Listing
September 2012

MR to ultrasound registration for image-guided prostate interventions.

Med Image Anal 2012 Apr 13;16(3):687-703. Epub 2010 Dec 13.

Centre for Medical Image Computing, University College London, London, UK.

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http://dx.doi.org/10.1016/j.media.2010.11.003DOI Listing
April 2012

Modelling prostate motion for data fusion during image-guided interventions.

IEEE Trans Med Imaging 2011 Nov 31;30(11):1887-900. Epub 2011 May 31.

UCL Centre for Medical Image Computing, the Departmentof Medical Physics and Bioengineering, and the Department of ComputerScience, University College London, UK.

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http://dx.doi.org/10.1109/TMI.2011.2158235DOI Listing
November 2011

Effects of respiratory liver motion on heating for gated and model-based motion-compensated high-intensity focused ultrasound ablation.

Med Image Comput Comput Assist Interv 2011 ;14(Pt 1):605-12

Centre for Medical Image Computing, University College London, London, UK.

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http://dx.doi.org/10.1007/978-3-642-23623-5_76DOI Listing
November 2011

Characterizing clinically significant prostate cancer using template prostate mapping biopsy.

J Urol 2011 Aug 15;186(2):458-64. Epub 2011 Jun 15.

Division of Surgery and Interventional Science, Centre for Medical Imaging Computing, University College London, Department of Histopathology, University College London Hospitals National Health Service Foundation Trust, London, United Kingdom.

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https://linkinghub.elsevier.com/retrieve/pii/S00225347110356
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http://dx.doi.org/10.1016/j.juro.2011.03.147DOI Listing
August 2011

A comparison of the accuracy of statistical models of prostate motion trained using data from biomechanical simulations.

Prog Biophys Mol Biol 2010 Dec 30;103(2-3):262-72. Epub 2010 Sep 30.

Centre for Medical Image Computing, Department of Medical Physics and Bioengineering, University College London, London, UK.

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http://dx.doi.org/10.1016/j.pbiomolbio.2010.09.009DOI Listing
December 2010

MR to ultrasound image registration for guiding prostate biopsy and interventions.

Med Image Comput Comput Assist Interv 2009 ;12(Pt 1):787-94

Centre for Medical Image Computing, University College London, London, UK.

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http://dx.doi.org/10.1007/978-3-642-04268-3_97DOI Listing
June 2010

A statistical motion model based on biomechanical simulations for data fusion during image-guided prostate interventions.

Med Image Comput Comput Assist Interv 2008 ;11(Pt 1):737-44

Centre for Medical Image Computing, University College London, London, UK.

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http://dx.doi.org/10.1007/978-3-540-85988-8_88DOI Listing
December 2008

MR navigated breast surgery: method and initial clinical experience.

Med Image Comput Comput Assist Interv 2008 ;11(Pt 2):356-63

Centre for Medical Image Computing, University College London, WC1E 6BT, UK.

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http://dx.doi.org/10.1007/978-3-540-85990-1_43DOI Listing
December 2008

Model-based blood flow quantification from rotational angiography.

Med Image Anal 2008 Oct 18;12(5):586-602. Epub 2008 Jun 18.

Centre for Medical Image Computing, University College London, London, United Kingdom.

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http://dx.doi.org/10.1016/j.media.2008.06.003DOI Listing
October 2008

Using flow information to support 3D vessel reconstruction from rotational angiography.

Med Phys 2008 Jul;35(7):3302-16

Centre for Medical Image Computing, University College London, Malet Place Engineering Building, London WC1E BT, United Kingdom.

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http://dx.doi.org/10.1118/1.2938729DOI Listing
July 2008

Instantiation and registration of statistical shape models of the femur and pelvis using 3D ultrasound imaging.

Med Image Anal 2008 Jun 29;12(3):358-74. Epub 2008 Jan 29.

Centre for Medical Image Computing, Department of Medical Physics and Bioengineering, 2nd Floor, Malet Place Engineering Building, University College London, Gower Street, London WC1E 6BT, United Kingdom.

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http://dx.doi.org/10.1016/j.media.2007.12.006DOI Listing
June 2008

Candesartan- and atenolol-based treatments induce different patterns of carotid artery and left ventricular remodeling in hypertension.

Stroke 2006 Sep 3;37(9):2381-4. Epub 2006 Aug 3.

Department of Clinical Pharmacology, International Centre for Circulatory Health, National Heart and Lung Division, Faculty of Medicine, Imperial College, London, England.

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http://dx.doi.org/10.1161/01.STR.0000236839.69658.c5DOI Listing
September 2006

Self-calibrating ultrasound-to-CT bone registration.

Med Image Comput Comput Assist Interv 2005 ;8(Pt 1):605-12

Centre for Medical Image Computing, University College London, UK.

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http://link.springer.com/content/pdf/10.1007/11566465_75.pdf
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http://dx.doi.org/10.1007/11566465_75DOI Listing
June 2006

Cadaver validation of intensity-based ultrasound to CT registration.

Med Image Comput Comput Assist Interv 2005 ;8(Pt 2):1000-7

Centre for Medical Image Computing (CMIC), University College London, UK.

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http://dx.doi.org/10.1007/11566489_123DOI Listing
June 2006

Self-calibrating 3D-ultrasound-based bone registration for minimally invasive orthopedic surgery.

IEEE Trans Med Imaging 2006 Mar;25(3):312-23

Department of Imaging Sciences, Guy's Hospital, GKT School of Medicine, King's College London, UK.

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http://dx.doi.org/10.1109/TMI.2005.862736DOI Listing
March 2006

Application of soft tissue modelling to image-guided surgery.

Med Eng Phys 2005 Dec 3;27(10):893-909. Epub 2005 Nov 3.

Centre for Medical Image Computing, Malet Place Engineering Building, University College London, Gower Street, London WC1E 6BT, UK.

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http://dx.doi.org/10.1016/j.medengphy.2005.10.005DOI Listing
December 2005

Operator dependence of 3-D ultrasound-based computational fluid dynamics for the carotid bifurcation.

IEEE Trans Med Imaging 2005 Apr;24(4):451-6

Cardiovascular Mechanics and Biofluid Dynamics Research Unit, University of Gent, St. Pieternieuwstraat 41, 9000 Gent, Belgium.

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April 2005

Reconstruction and quantification of the carotid artery bifurcation from 3-D ultrasound images.

IEEE Trans Med Imaging 2004 May;23(5):567-83

Department of Clinical Pharmacology & Therapeutics, National Heart & Lung Institute, Imperial College London, UK.

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May 2004