De-Shuang Huang

De-Shuang Huang

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De-Shuang Huang

De-Shuang Huang

Publications by authors named "De-Shuang Huang"

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Optimization of Gene Set Annotations Using Robust Trace-Norm Multitask Learning.

IEEE/ACM Trans Comput Biol Bioinform 2018 May-Jun;15(3):1016-1021. Epub 2017 Apr 3.

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http://dx.doi.org/10.1109/TCBB.2017.2690427DOI Listing
May 2019

LMMO: A Large Margin Approach for Refining Regulatory Motifs.

IEEE/ACM Trans Comput Biol Bioinform 2018 May-Jun;15(3):913-925. Epub 2017 Apr 5.

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http://dx.doi.org/10.1109/TCBB.2017.2691325DOI Listing
May 2019

DCDE: An Efficient Deep Convolutional Divergence Encoding Method for Human Promoter Recognition.

IEEE Trans Nanobioscience 2019 Apr 7;18(2):136-145. Epub 2019 Jan 7.

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http://dx.doi.org/10.1109/TNB.2019.2891239DOI Listing
April 2019

Robust dimensionality reduction via feature space to feature space distance metric learning.

Neural Netw 2019 Apr 21;112:1-14. Epub 2019 Jan 21.

School of Electronics and Information Engineering, Tongji University, Shanghai, China.

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http://dx.doi.org/10.1016/j.neunet.2019.01.001DOI Listing
April 2019

A Network-guided Association Mapping Approach from DNA Methylation to Disease.

Sci Rep 2019 Apr 3;9(1):5601. Epub 2019 Apr 3.

Institute of Machine Learning and Systems Biology, College of Electronic and Information Engineering, Tongji University, Shanghai, 201804, P.R. China.

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http://www.nature.com/articles/s41598-019-42010-6
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http://dx.doi.org/10.1038/s41598-019-42010-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6447594PMC
April 2019

Capsule Network based Modeling of Multi-omics Data for Discovery of Breast Cancer-related Genes.

IEEE/ACM Trans Comput Biol Bioinform 2019 Apr 9. Epub 2019 Apr 9.

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http://dx.doi.org/10.1109/TCBB.2019.2909905DOI Listing
April 2019

RNA-Protein Binding Sites Prediction via Multi Scale Convolutional Gated Recurrent Unit Networks.

IEEE/ACM Trans Comput Biol Bioinform 2019 Apr 11. Epub 2019 Apr 11.

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http://dx.doi.org/10.1109/TCBB.2019.2910513DOI Listing
April 2019

Fast sequence analysis based on diamond sampling.

PLoS One 2018 28;13(6):e0198922. Epub 2018 Jun 28.

Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0198922PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6023231PMC
December 2018

Inference of Large-scale Time-delayed Gene Regulatory Network with Parallel MapReduce Cloud Platform.

Sci Rep 2018 Dec 12;8(1):17787. Epub 2018 Dec 12.

School of Information Science and Engineering, University of Jinan, Jinan, China.

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http://dx.doi.org/10.1038/s41598-018-36180-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6290780PMC
December 2018

iEnhancer-EL: identifying enhancers and their strength with ensemble learning approach.

Bioinformatics 2018 Nov;34(22):3835-3842

Gordon Life Science Institute, Belmont, MA, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty458DOI Listing
November 2018

Recurrent Neural Network for Predicting Transcription Factor Binding Sites.

Sci Rep 2018 Oct 15;8(1):15270. Epub 2018 Oct 15.

Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, 201804, P. R. China.

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http://www.nature.com/articles/s41598-018-33321-1
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http://dx.doi.org/10.1038/s41598-018-33321-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6189047PMC
October 2018

HSCVFNT: Inference of Time-Delayed Gene Regulatory Network Based on Complex-Valued Flexible Neural Tree Model.

Int J Mol Sci 2018 Oct 15;19(10). Epub 2018 Oct 15.

Institute of Machine Learning and Systems Biology, Tongji University, Shanghai 200092, China.

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http://dx.doi.org/10.3390/ijms19103178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214043PMC
October 2018

iRO-3wPseKNC: identify DNA replication origins by three-window-based PseKNC.

Bioinformatics 2018 09;34(18):3086-3093

Gordon Life Science Institute, Belmont, MA, USA.

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https://academic.oup.com/bioinformatics/article/34/18/3086/4
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http://dx.doi.org/10.1093/bioinformatics/bty312DOI Listing
September 2018

A Deep Learning Framework for Robust and Accurate Prediction of ncRNA-Protein Interactions Using Evolutionary Information.

Mol Ther Nucleic Acids 2018 Jun 9;11:337-344. Epub 2018 Mar 9.

Xinjiang Technical Institutes of Physics and Chemistry, Chinese Academy of Science, Urumqi 830011, China.

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http://dx.doi.org/10.1016/j.omtn.2018.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992449PMC
June 2018

Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids.

J Healthc Eng 2018 9;2018:1391265. Epub 2018 May 9.

Department of Computer Engineering, Inha University, Incheon 22212, Republic of Korea.

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http://dx.doi.org/10.1155/2018/1391265DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966669PMC
May 2018

Improving Prediction of Self-interacting Proteins Using Stacked Sparse Auto-Encoder with PSSM profiles.

Int J Biol Sci 2018 23;14(8):983-991. Epub 2018 May 23.

Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, Urumqi 830011, China.

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http://dx.doi.org/10.7150/ijbs.23817DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036743PMC
May 2018

High-Order Convolutional Neural Network Architecture for Predicting DNA-Protein Binding Sites.

IEEE/ACM Trans Comput Biol Bioinform 2018 Mar 26. Epub 2018 Mar 26.

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http://dx.doi.org/10.1109/TCBB.2018.2819660DOI Listing
March 2018

Novel human microbe-disease association prediction using network consistency projection.

BMC Bioinformatics 2017 12 28;18(Suppl 16):543. Epub 2017 Dec 28.

Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Caoan Road 4800, Shanghai, 201804, China.

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http://dx.doi.org/10.1186/s12859-017-1968-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751545PMC
December 2017

CIPPN: computational identification of protein pupylation sites by using neural network.

Oncotarget 2017 Dec 6;8(65):108867-108879. Epub 2017 Nov 6.

Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, China.

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http://dx.doi.org/10.18632/oncotarget.22335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5752488PMC
December 2017

PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-Scale Data.

IEEE/ACM Trans Comput Biol Bioinform 2017 May-Jun;14(3):678-686. Epub 2016 Apr 5.

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http://dx.doi.org/10.1109/TCBB.2016.2550443DOI Listing
November 2017

Mutli-Features Prediction of Protein Translational Modification Sites.

IEEE/ACM Trans Comput Biol Bioinform 2018 Sep-Oct;15(5):1453-1460. Epub 2017 Sep 28.

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https://ieeexplore.ieee.org/document/8052538/
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http://dx.doi.org/10.1109/TCBB.2017.2752703DOI Listing
September 2017

An efficient method to transcription factor binding sites imputation via simultaneous completion of multiple matrices with positional consistency.

Mol Biosyst 2017 Aug;13(9):1827-1837

Institute of Machine Learning and Systems Biology, School of Electronics and Information Engineering, Tongji University, Shanghai, 201804, China.

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http://xlink.rsc.org/?DOI=C7MB00155J
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http://dx.doi.org/10.1039/c7mb00155jDOI Listing
August 2017

Classification of caesarean section and normal vaginal deliveries using foetal heart rate signals and advanced machine learning algorithms.

Biomed Eng Online 2017 Jul 6;16(1):89. Epub 2017 Jul 6.

Concordia Institute for Information Systems Engineering, Concorida University, 1455 de Maisonneuve Blvd West, EV7.632, Montreal, QC, HJ3G 2W1, Canada.

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http://dx.doi.org/10.1186/s12938-017-0378-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498914PMC
July 2017

Direct AUC optimization of regulatory motifs.

Bioinformatics 2017 Jul;33(14):i243-i251

Institute of Machine Learning and Systems Biology, Department of College of Electronics and Information Engineering, Tongji University, Shanghai, China.

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http://dx.doi.org/10.1093/bioinformatics/btx255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870558PMC
July 2017

WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data.

Sci Rep 2017 06 12;7(1):3217. Epub 2017 Jun 12.

Institute of Machine Learning and Systems Biology, College of Electronics and Information Engineering, Tongji University, Shanghai, 201804, P.R. China.

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http://dx.doi.org/10.1038/s41598-017-03554-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5468353PMC
June 2017

A novel computational model based on super-disease and miRNA for potential miRNA-disease association prediction.

Mol Biosyst 2017 May;13(6):1202-1212

School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, 221116, China.

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http://dx.doi.org/10.1039/c6mb00853dDOI Listing
May 2017

An improved method for predicting interactions between virus and human proteins.

J Bioinform Comput Biol 2017 Feb 10;15(1):1650024. Epub 2016 Jul 10.

* Department of Computer Science and Engineering, Inha University, Incheon 22212, South Korea.

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http://dx.doi.org/10.1142/S0219720016500244DOI Listing
February 2017

Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks.

IEEE/ACM Trans Comput Biol Bioinform 2016 Jan-Feb;13(1):27-35. Epub 2015 Sep 25.

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http://dx.doi.org/10.1109/TCBB.2015.2476790DOI Listing
December 2016

Guest Editorial for Special Section on the 10th International Conference on Intelligent Computing (ICIC).

IEEE/ACM Trans Comput Biol Bioinform 2016 Jan-Feb;13(1):1-3

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December 2016

Identification of self-interacting proteins by exploring evolutionary information embedded in PSI-BLAST-constructed position specific scoring matrix.

Oncotarget 2016 Dec;7(50):82440-82449

School of Computer Science and Technology, China University of Mining and Technology, Xuzhou 21116, China.

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http://dx.doi.org/10.18632/oncotarget.12517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5347703PMC
December 2016

Collaborative Completion of Transcription Factor Binding Profiles via Local Sensitive Unified Embedding.

IEEE Trans Nanobioscience 2016 12 7;15(8):946-958. Epub 2016 Nov 7.

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http://dx.doi.org/10.1109/TNB.2016.2625823DOI Listing
December 2016

Robust and accurate prediction of protein self-interactions from amino acids sequence using evolutionary information.

Mol Biosyst 2016 11;12(12):3702-3710

School of Computer Science and Technology, China University of Mining and Technology, Xuzhou 21116, China.

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http://dx.doi.org/10.1039/c6mb00599cDOI Listing
November 2016

Random Walk-Based Solution to Triple Level Stochastic Point Location Problem.

IEEE Trans Cybern 2016 06 8;46(6):1438-51. Epub 2015 Jul 8.

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http://dx.doi.org/10.1109/TCYB.2015.2446198DOI Listing
June 2016

A regression model for calculating the second dimension retention index in comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry.

J Chromatogr A 2016 Jun 26;1451:127-134. Epub 2016 Apr 26.

Institute of Health Sciences, Anhui University, Hefei, Anhui, China.

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http://dx.doi.org/10.1016/j.chroma.2016.04.068DOI Listing
June 2016

Module Based Differential Coexpression Analysis Method for Type 2 Diabetes.

Biomed Res Int 2015 3;2015:836929. Epub 2015 Aug 3.

School of Electronics and Information Engineering, Tongji University, Shanghai 201804, China.

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http://dx.doi.org/10.1155/2015/836929DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4538423PMC
May 2016

ILNCSIM: improved lncRNA functional similarity calculation model.

Oncotarget 2016 May;7(18):25902-14

Department of Computing, The Hong Kong Polytechnic University, Hong Kong, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5041953PMC
http://dx.doi.org/10.18632/oncotarget.8296DOI Listing
May 2016

DiscMLA: An Efficient Discriminative Motif Learning Algorithm over High-Throughput Datasets.

IEEE/ACM Trans Comput Biol Bioinform 2018 Nov-Dec;15(6):1810-1820. Epub 2016 May 3.

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http://dx.doi.org/10.1109/TCBB.2016.2561930DOI Listing
May 2016

A Two-Stage Geometric Method for Pruning Unreliable Links in Protein-Protein Networks.

IEEE Trans Nanobioscience 2015 Jul 8;14(5):528-34. Epub 2015 Apr 8.

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http://dx.doi.org/10.1109/TNB.2015.2420754DOI Listing
July 2015

Prediction of protein-protein interactions based on protein-protein correlation using least squares regression.

Curr Protein Pept Sci 2014 ;15(6):553-60

Machine Learning and Systems Biology Lab, College of Electronics and Information Engineering, Tongji University, Shanghai, 201804, China.

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April 2015

Identifying cancer-related microRNAs based on gene expression data.

Bioinformatics 2015 Apr 12;31(8):1226-34. Epub 2014 Dec 12.

School of Electronics and Information Engineering, Tongji University, Shanghai 201804, China, Center for Bioinformatics and Systems Biology, Department of Radiology, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA, LERIA, University of Angers, 49045 Angers Cedex 01, France, Department of Mathematics, Shanghai University, Shanghai 200444, China and Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.

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http://dx.doi.org/10.1093/bioinformatics/btu811DOI Listing
April 2015

SFAPS: an R package for structure/function analysis of protein sequences based on informational spectrum method.

Methods 2014 Oct 15;69(3):207-12. Epub 2014 Aug 15.

Machine Learning and Systems Biology Lab, College of Electronics and Information Engineering, Tongji University, 4800 Caoan Road, Dianxin Building, Shanghai 201804, China; College of Computer and Communication Engineering, Zhengzhou University of Light Industry, Zhengzhou 450002, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10462023140026
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http://dx.doi.org/10.1016/j.ymeth.2014.08.004DOI Listing
October 2014

A new strategy for protein interface identification using manifold learning method.

IEEE Trans Nanobioscience 2014 Jun 22;13(2):118-23. Epub 2014 Apr 22.

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http://dx.doi.org/10.1109/TNB.2014.2316997DOI Listing
June 2014

Special section on the 2013 IEEE Conference on Bioinformatics and Biomedicine (BIBM).

IEEE Trans Nanobioscience 2014 Jun;13(2):63-4

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June 2014

Robust classification method of tumor subtype by using correlation filters.

IEEE/ACM Trans Comput Biol Bioinform 2012 17;9(2):580-91. Epub 2011 Oct 17.

Hunan Universtiy, Changsha.

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http://dx.doi.org/10.1109/TCBB.2011.135DOI Listing
May 2014

PPISEARCHENGINE: gene ontology-based search for protein-protein interactions.

Comput Methods Biomech Biomed Engin 2013 9;16(7):691-8. Epub 2012 Feb 9.

Institute for Information and Electronics Research, Inha University, Incheon, 402-751, South Korea.

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http://dx.doi.org/10.1080/10255842.2011.631528DOI Listing
March 2014

Normalized feature vectors: a novel alignment-free sequence comparison method based on the numbers of adjacent amino acids.

IEEE/ACM Trans Comput Biol Bioinform 2013 Mar-Apr;10(2):457-67

School of Electronics and Information Engineering, Tongji University, 4800 Caoan Road, Shanghai 201804, China.

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http://dx.doi.org/10.1109/TCBB.2013.10DOI Listing
February 2014

t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks.

PLoS One 2013 1;8(4):e58368. Epub 2013 Apr 1.

Intelligent Computing Lab, Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058368PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613363PMC
September 2013

Graphical representation for DNA sequences via joint diagonalization of matrix pencil.

IEEE J Biomed Health Inform 2013 May;17(3):503-11

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May 2013

A general CPL-AdS methodology for fixing dynamic parameters in dual environments.

IEEE Trans Syst Man Cybern B Cybern 2012 Oct 1;42(5):1489-500. Epub 2012 May 1.

School of Electronics and Information Engineering, Tongji University, Shanghai 201804, China.

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http://dx.doi.org/10.1109/TSMCB.2012.2192475DOI Listing
October 2012

Completed local binary count for rotation invariant texture classification.

IEEE Trans Image Process 2012 Oct 12;21(10):4492-7. Epub 2012 Jun 12.

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http://dx.doi.org/10.1109/TIP.2012.2204271DOI Listing
October 2012

Molecular pattern discovery based on penalized matrix decomposition.

IEEE/ACM Trans Comput Biol Bioinform 2011 Nov-Dec;8(6):1592-603

College of Electrical Engineering and Automation, Anhui University, Hefei, Anhui 230039, China.

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http://dx.doi.org/10.1109/TCBB.2011.79DOI Listing
April 2012

Metasample-based sparse representation for tumor classification.

IEEE/ACM Trans Comput Biol Bioinform 2011 Sep-Oct;8(5):1273-82

College of Information and Communication Technology, Qufu Normal University, Rizhao, Shandong 276826, China.

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http://dx.doi.org/10.1109/TCBB.2011.20DOI Listing
January 2012

Selecting salient objects in real scenes: an oscillatory correlation model.

Neural Netw 2011 Jan 17;24(1):54-64. Epub 2010 Sep 17.

Department of Science and Technology, Federal University of São Paulo (Unifesp), São José dos Campos, SP, Brazil.

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http://dx.doi.org/10.1016/j.neunet.2010.09.002DOI Listing
January 2011

Predicting protein-protein interactions from protein sequences using meta predictor.

Amino Acids 2010 Nov 13;39(5):1595-9. Epub 2010 Apr 13.

Intelligent Computing Laboratory, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, P.O. Box 1130, Hefei, Anhui, 230031, China.

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http://dx.doi.org/10.1007/s00726-010-0588-1DOI Listing
November 2010

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data.

Bioinformatics 2010 Nov 3;26(21):2744-51. Epub 2010 Sep 3.

Intelligent Computing Laboratory, Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui, China.

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http://dx.doi.org/10.1093/bioinformatics/btq510DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3025743PMC
November 2010

Gene expression data classification using locally linear discriminant embedding.

Comput Biol Med 2010 Oct 22;40(10):802-10. Epub 2010 Sep 22.

Intelligent Computing Laboratory, Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China.

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http://linkinghub.elsevier.com/retrieve/pii/S001048251000118
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http://dx.doi.org/10.1016/j.compbiomed.2010.08.003DOI Listing
October 2010

Special issue on intelligent computing in protein science.

Authors:
De-Shuang Huang

Protein Pept Lett 2010 Sep;17(9):1067-8

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September 2010

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network.

BMC Bioinformatics 2010 Jun 24;11:343. Epub 2010 Jun 24.

Intelligent Computing Lab, Institute of Intelligent Machine, Chinese Academy of Science, P.O. Box 1130, Hefei, Anhui 230031, China.

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http://dx.doi.org/10.1186/1471-2105-11-343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909217PMC
June 2010

A method of tumor classification based on wavelet packet transforms and neighborhood rough set.

Comput Biol Med 2010 Apr 12;40(4):430-7. Epub 2010 Mar 12.

Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, P.O. Box 1130, Hefei, Anhui 230031, China.

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http://dx.doi.org/10.1016/j.compbiomed.2010.02.007DOI Listing
April 2010

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.

BMC Bioinformatics 2010 Apr 8;11:174. Epub 2010 Apr 8.

Intelligent Computing Laboratory, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China.

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http://dx.doi.org/10.1186/1471-2105-11-174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874803PMC
April 2010

Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset.

Amino Acids 2010 Mar 24;38(3):891-9. Epub 2009 Apr 24.

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, 230031 Hefei, China.

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http://dx.doi.org/10.1007/s00726-009-0295-yDOI Listing
March 2010

Tumor classification by combining PNN classifier ensemble with neighborhood rough set based gene reduction.

Comput Biol Med 2010 Feb 30;40(2):179-89. Epub 2009 Dec 30.

Hunan University, Changsha, China.

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http://dx.doi.org/10.1016/j.compbiomed.2009.11.014DOI Listing
February 2010

Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor.

Protein Pept Lett 2010 Jan;17(1):137-45

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, P.O. Box 1130, Hefei, Anhui 230031, China.

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January 2010

Tumor clustering using nonnegative matrix factorization with gene selection.

IEEE Trans Inf Technol Biomed 2009 Jul 14;13(4):599-607. Epub 2009 Apr 14.

Intelligent Computing Laboratory, Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei 230031, China.

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http://dx.doi.org/10.1109/TITB.2009.2018115DOI Listing
July 2009

Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting.

BMC Bioinformatics 2009 Jan 30;10 Suppl 1:S57. Epub 2009 Jan 30.

School of Computer Science and Engineering, Inha University, Incheon, South Korea.

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http://www.biomedcentral.com/1471-2105/10/S1/S57
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http://dx.doi.org/10.1186/1471-2105-10-S1-S57DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648735PMC
January 2009

A constructive hybrid structure optimization methodology for radial basis probabilistic neural networks.

IEEE Trans Neural Netw 2008 Dec;19(12):2099-115

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, China.

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http://dx.doi.org/10.1109/TNN.2008.2004370DOI Listing
December 2008

A protein interaction network analysis for yeast integral membrane protein.

Protein Pept Lett 2008 ;15(7):692-9

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei Anhui, 230031, China.

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November 2008

Predicting contact map using radial basis function neural network with conformational energy function.

Int J Bioinform Res Appl 2008 ;4(2):123-36

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui, China.

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http://dx.doi.org/10.1504/IJBRA.2008.01834DOI Listing
September 2008

Intelligent computing techniques to solve problems in protein bioinformatics. Editorial.

Authors:
De-Shuang Huang

Protein Pept Lett 2008 ;15(5):427

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August 2008

Predicting key long-range interaction sites by B-factors.

Protein Pept Lett 2008 ;15(5):478-83

Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei Anhui, 230031, China.

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August 2008

Gene expression data classification using consensus independent component analysis.

Genomics Proteomics Bioinformatics 2008 Jun;6(2):74-82

College of Information and Communication Technology, Qufu Normal University, Rizhao 276826, China.

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http://linkinghub.elsevier.com/retrieve/pii/S167202290860022
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http://dx.doi.org/10.1016/S1672-0229(08)60022-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054104PMC
June 2008

An algorithm for finding functional modules and protein complexes in protein-protein interaction networks.

J Biomed Biotechnol 2008 ;2008:860270

School of Computer Science and Engineering, Inha University, Incheon 402-751, South Korea.

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http://dx.doi.org/10.1155/2008/860270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2278021PMC
May 2008

Cancer classification using Rotation Forest.

Comput Biol Med 2008 May 3;38(5):601-10. Epub 2008 Apr 3.

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, PO Box 1130, Hefei, Anhui 230031, China.

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http://dx.doi.org/10.1016/j.compbiomed.2008.02.007DOI Listing
May 2008

Improved performance in protein secondary structure prediction by combining multiple predictions.

Protein Pept Lett 2006 ;13(10):985-91

Intelligent Computing Lab., Hefei Institute of Intelligent Machines, CAS, P.O. Box 1130, Hefei, Anhui, China.

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October 2007

Inferring protein-protein interacting sites using residue conservation and evolutionary information.

Protein Pept Lett 2006 ;13(10):999-1005

Hefei Institute Intelligent Machines, Chinese Academy of Science, Hefei, Anhui, 230031, China.

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October 2007

MISEP method for postnonlinear blind source separation.

Neural Comput 2007 Sep;19(9):2557-78

Intelligent Computing Lab, Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui, China.

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http://dx.doi.org/10.1162/neco.2007.19.9.2557DOI Listing
September 2007

A new constrained independent component analysis method.

IEEE Trans Neural Netw 2007 Sep;18(5):1532-5

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September 2007

Prediction of protein B-factors using multi-class bounded SVM.

Protein Pept Lett 2007 ;14(2):185-90

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei Anhui, 230031, China.

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June 2007

A hybrid forward algorithm for RBF neural network construction.

IEEE Trans Neural Netw 2006 Nov;17(6):1439-51

School of Electronics, Electrical Engineering and Computer Science, Queen's University Belfast, Belfast BT9 5AH, UK.

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http://dx.doi.org/10.1109/TNN.2006.880860DOI Listing
November 2006

Independent component analysis-based penalized discriminant method for tumor classification using gene expression data.

Bioinformatics 2006 Aug 18;22(15):1855-62. Epub 2006 May 18.

Intelligent Computing Lab, Institute of Intelligent Machines, Chinese Academy of Sciences PO Box 1130, Hefei, Anhui 230031, China.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btl190DOI Listing
August 2006

Network analysis of the protein chain tertiary structures of heterocomplexes.

Protein Pept Lett 2006 ;13(4):391-6

Intelligent Computing Lab, Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China.

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July 2006

Identifying protein-protein interfacial residues in heterocomplexes using residue conservation scores.

Int J Biol Macromol 2006 May 4;38(3-5):241-7. Epub 2006 Apr 4.

Intelligent Computing Lab, Institute of Intelligent Machines, Chinese Academy of Sciences, He Fei An Hui, PR China.

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http://dx.doi.org/10.1016/j.ijbiomac.2006.02.024DOI Listing
May 2006

The forecast of the postoperative survival time of patients suffered from non-small cell lung cancer based on PCA and extreme learning machine.

Int J Neural Syst 2006 Feb;16(1):39-46

Intelligent Computation Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Science, Hefei, Anhui, 230031, China.

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http://dx.doi.org/10.1142/S0129065706000494DOI Listing
February 2006

A novel Markov pairwise protein sequence alignment method for sequence comparison.

Protein Pept Lett 2005 Oct;12(7):665-9

Intelligent Computing Lab, Hefei Institute of Intelligent Machines, Chinese Academy of Sciences, P.O.Box 1130, Hefei, Anhui, 230031, China.

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October 2005