Publications by authors named "Davide Prandi"

24Publications

Ploidy- and Purity-Adjusted Allele-Specific DNA Analysis Using CLONETv2.

Curr Protoc Bioinformatics 2019 09;67(1):e81

Department of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cpbi.81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778654PMC
September 2019

TPES: tumor purity estimation from SNVs.

Bioinformatics 2019 11;35(21):4433-4435

Laboratory of Computational and Functional Oncology, CIBIO Department, University of Trento, Trento, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btz406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821153PMC
November 2019

Hit and go CAS9 delivered through a lentiviral based self-limiting circuit.

Nat Commun 2017 05 22;8:15334. Epub 2017 May 22.

Centre for Integrative Biology (CIBIO), University of Trento, Laboratory of Molecular Virology, Via Sommarive 9, Trento 38123, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ncomms15334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5458126PMC
May 2017

Clonal evolution of chemotherapy-resistant urothelial carcinoma.

Nat Genet 2016 12 17;48(12):1490-1499. Epub 2016 Oct 17.

Caryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital-Weill Cornell Medicine, New York, New York, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ng.3692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5549141PMC
December 2016

ASEQ: fast allele-specific studies from next-generation sequencing data.

BMC Med Genomics 2015 Mar 1;8. Epub 2015 Mar 1.

Centre for Integrative Biology (CIBIO), University of Trento, Trento, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12920-015-0084-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4363342PMC
March 2015

The Relevance of Topology in Parallel Simulation of Biological Networks.

IEEE/ACM Trans Comput Biol Bioinform 2012 May-Jun;9(3):911-923. Epub 2012 Jan 30.

IRCCS Casa Sollievo della Sofferenza, Rome.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/TCBB.2012.27DOI Listing
January 2012

GPU computing for systems biology.

Brief Bioinform 2010 May 7;11(3):323-33. Epub 2010 Mar 7.

CoSBi Centre, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbq006DOI Listing
May 2010

Taming the complexity of biological pathways through parallel computing.

Brief Bioinform 2009 May 1;10(3):278-88. Epub 2009 Apr 1.

The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Piazza Manci 17 38100 Povo, Trento, Italy.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbp020DOI Listing
May 2009