Publications by authors named "Davide Cittaro"

58Publications

Fast analysis of scATAC-seq data using a predefined set of genomic regions.

F1000Res 2020 20;9:199. Epub 2020 Mar 20.

Center for Omics Sciences, IRCCS San Raffaele Institute, Milan, Italy.

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March 2020

Identification of novel genetic variants associated with short stature in a Baka Pygmies population.

Hum Genet 2020 Nov 24;139(11):1471-1483. Epub 2020 Jun 24.

University of Pavia, and Onlus Il Bambino E Il Suo Pediatra, Via XX Settembre 28, Galliate, 28066, Novara, Italy.

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November 2020

A novel truncating variant of GLI2 associated with Culler-Jones syndrome impairs Hedgehog signalling.

PLoS One 2019 10;14(1):e0210097. Epub 2019 Jan 10.

Centre for Translational Genomics and Bioinformatics, IRCSS San Raffaele Scientific Institute, Milan, Italy.

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September 2019

Tumor suppressor PNRC1 blocks rRNA maturation by recruiting the decapping complex to the nucleolus.

EMBO J 2018 12 29;37(23). Epub 2018 Oct 29.

Functional Genomics of Cancer Unit, Division of Experimental Oncology, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS) San Raffaele Scientific Institute, Milan, Italy

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December 2018

miR-17∼92 family clusters control iNKT cell ontogenesis via modulation of TGF-β signaling.

Proc Natl Acad Sci U S A 2016 12 5;113(51):E8286-E8295. Epub 2016 Dec 5.

Experimental Immunology Unit, Division of Immunology, Transplantation and Infectious Diseases, San Raffaele Scientific Institute, 20132 Milan, Italy;

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December 2016

Whole exome sequencing of independent lung adenocarcinoma, lung squamous cell carcinoma, and malignant peritoneal mesothelioma: A case report.

Medicine (Baltimore) 2016 Nov;95(48):e5447

Lung Cancer Unit, IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro, Genova Centre for Translational Genomics and Bioinformatics, IRCCS San Raffaele Scientific Institute, Milan Department of Internal Medicine and Medical Specialties (DIMI), Università di Genova IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro, Genova Department of Pathology, IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro, Genova Laboratory of Tumor Epigenetics, IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro and Department of Health Sciences, Università di Genova, Genova, Italy.

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November 2016

Viable phenotype of ILNEB syndrome without nephrotic impairment in siblings heterozygous for unreported integrin alpha3 mutations.

Orphanet J Rare Dis 2016 10 7;11(1):136. Epub 2016 Oct 7.

Laboratorio di Citogenetica Medica e Genetica Molecolare, Centro di Ricerche e Tecnologie Biomediche IRCCS-Istituto Auxologico Italiano, Via Zucchi 18, 20095, Cusano Milanino, Italy.

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October 2016

Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing.

Cell 2016 Sep;167(1):219-232.e14

San Raffaele Telethon Institute for Gene Therapy (SR-Tiget), IRCCS San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy; Vita-Salute San Raffaele University, Via Olgettina 58, 20132 Milan, Italy. Electronic address:

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September 2016

A novel genomic inversion in Wiskott-Aldrich-associated autoinflammation.

J Allergy Clin Immunol 2016 08 22;138(2):619-622.e7. Epub 2016 Apr 22.

San Raffaele Telethon Institute for Gene Therapy (SR-TIGET), IRCCS San Raffaele Scientific Institute, Milan, Italy; Pediatric Immunohematology and Bone Marrow Transplantation Unit, IRCCS San Raffaele Scientific Institute, Milan, Italy.

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August 2016

Revealing the acute asthma ignorome: characterization and validation of uninvestigated gene networks.

Sci Rep 2016 Apr 21;6:24647. Epub 2016 Apr 21.

Center for Translational Genomics and Bioinformatics, San Raffaele Scientific Institute, Milan, Italy.

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April 2016

Chromas from chromatin: sonification of the epigenome.

F1000Res 2016 3;5:274. Epub 2016 Mar 3.

Center for Translational Genomics and Bioinformatics, San Raffaele Hospital- via olgettina 58, 20138 Milano, Italy; Department of Molecular Biotechnology and Life Sciences, University of Turin - via Nizza 52, 10126 Torino, Italy.

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March 2016

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model.

Biomed Res Int 2015 27;2015:202914. Epub 2015 Aug 27.

Division of Neurosciences, San Raffaele Institute and Vita-Salute San Raffaele University, 20133 Milan, Italy.

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August 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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July 2015

H3K4me3 demethylation by the histone demethylase KDM5C/JARID1C promotes DNA replication origin firing.

Nucleic Acids Res 2015 Mar 23;43(5):2560-74. Epub 2015 Feb 23.

Functional Genomics of Cancer Unit, Division of Experimental Oncology, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), San Raffaele Scientific Institute, Via Olgettina 60, 20132 Milan, Italy

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March 2015

CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data.

Bioinformatics 2008 Dec 21;24(24):2918-20. Epub 2008 Oct 21.

Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, Italy.

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December 2008

Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching.

Mol Cell Proteomics 2007 Dec 5;6(12):2200-11. Epub 2007 Oct 5.

FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milan, Italy.

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December 2007

Graph-based identification of cancer signaling pathways from published gene expression signatures using PubLiME.

Nucleic Acids Res 2007 27;35(7):2343-55. Epub 2007 Mar 27.

The FIRC Institute of Molecular Oncology Foundation, Milan, Italy.

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June 2007

Peptide identification using vectors of small fragment ions.

J Proteome Res 2005 May-Jun;4(3):1006-11

Proteomics Group, The FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milan, Italy.

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October 2005