Publications by authors named "Davide Cittaro"

58Publications

FAM46C and FNDC3A Are Multiple Myeloma Tumor Suppressors That Act in Concert to Impair Clearing of Protein Aggregates and Autophagy.

Authors:
Nicola Manfrini Marilena Mancino Annarita Miluzio Stefania Oliveto Matteo Balestra Piera Calamita Roberta Alfieri Riccardo L Rossi Marco Sassoè-Pognetto Chiara Salio Alessandro Cuomo Tiziana Bonaldi Marcello Manfredi Emilio Marengo Elia Ranzato Simona Martinotti Davide Cittaro Giovanni Tonon Stefano Biffo

Cancer Res 2020 Nov 22;80(21):4693-4706. Epub 2020 Sep 22.

INGM, National Institute of Molecular Genetics, "Fondazione Romeo ed Enrica Invernizzi," Milan, Italy.

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November 2020

Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking.

Authors:
Samuele Ferrari Aurelien Jacob Stefano Beretta Giulia Unali Luisa Albano Valentina Vavassori Davide Cittaro Dejan Lazarevic Chiara Brombin Federica Cugnata Anna Kajaste-Rudnitski Ivan Merelli Pietro Genovese Luigi Naldini

Nat Biotechnol 2020 11 29;38(11):1298-1308. Epub 2020 Jun 29.

San Raffaele Telethon Institute for Gene Therapy (SR-TIGET), IRCCS San Raffaele Scientific Institute, Milan, Italy.

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November 2020

Fast analysis of scATAC-seq data using a predefined set of genomic regions.

Authors:
Valentina Giansanti Ming Tang Davide Cittaro

F1000Res 2020 20;9:199. Epub 2020 Mar 20.

Center for Omics Sciences, IRCCS San Raffaele Institute, Milan, Italy.

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March 2020

Identification of novel genetic variants associated with short stature in a Baka Pygmies population.

Authors:
Matteo Zoccolillo Claudia Moia Sergio Comincini Davide Cittaro Dejan Lazarevic Karen A Pisani Jan M Wit Mauro Bozzola

Hum Genet 2020 Nov 24;139(11):1471-1483. Epub 2020 Jun 24.

University of Pavia, and Onlus Il Bambino E Il Suo Pediatra, Via XX Settembre 28, Galliate, 28066, Novara, Italy.

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November 2020

Autosomal Dominant Tubulointerstitial Kidney Disease with Adult Onset due to a Novel Renin Mutation Mapping in the Mature Protein.

Authors:
Céline Schaeffer Claudia Izzi Andrea Vettori Elena Pasqualetto Davide Cittaro Dejan Lazarevic Gianluca Caridi Barbara Gnutti Cinzia Mazza Luca Jovine Francesco Scolari Luca Rampoldi

Sci Rep 2019 08 12;9(1):11601. Epub 2019 Aug 12.

Molecular Genetics of Renal Disorders, Division of Genetics and Cell Biology, IRCCS San Raffaele Scientific Institute, Milan, Italy.

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August 2019

TBC1D24-TLDc-related epilepsy exercise-induced dystonia: rescue by antioxidants in a disease model.

Authors:
Kevin Lüthy Davide Mei Baptiste Fischer Maurizio De Fusco Jef Swerts Jone Paesmans Elena Parrini Naomi Lubarr Inge A Meijer Katherine M Mackenzie Wang-Tso Lee Davide Cittaro Paolo Aridon Nils Schoovaerts Wim Versées Patrik Verstreken Giorgio Casari Renzo Guerrini

Brain 2019 08;142(8):2319-2335

Pediatric Neurology, Neurogenetics and Neurobiology Unit and Laboratories, Children's Hospital A. Meyer-University of Florence, Florence, Italy.

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August 2019

Corrigendum: Targeted NGS Platforms for Genetic Screening and Gene Discovery in Primary Immunodeficiencies.

Authors:
Cristina Cifaldi Immacolata Brigida Federica Barzaghi Matteo Zoccolillo Valentina Ferradini Davide Petricone Maria Pia Cicalese Dejan Lazarevic Davide Cittaro Maryam Omrani Enrico Attardi Francesca Conti Alessia Scarselli Maria Chiriaco Silvia Di Cesare Francesco Licciardi Montin Davide Francesca Ferrua Clementina Canessa Claudio Pignata Silvia Giliani Simona Ferrari Georgia Fousteri Graziano Barera Pietro Merli Paolo Palma Simone Cesaro Marco Gattorno Antonio Trizzino Viviana Moschese Loredana Chini Anna Villa Chiara Azzari Andrea Finocchi Franco Locatelli Paolo Rossi Federica Sangiuolo Alessandro Aiuti Caterina Cancrini Gigliola Di Matteo

Front Immunol 2019 31;10:1184. Epub 2019 May 31.

Unit of Immune and Infectious Diseases, University Department of Pediatrics (DPUO), Scientific Institute for Research and Healthcare (IRCCS) Childrens' Hospital Bambino Gesù, Rome, Italy.

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May 2019

Release of paused RNA polymerase II at specific loci favors DNA double-strand-break formation and promotes cancer translocations.

Authors:
Gaetano Ivan Dellino Fernando Palluzzi Andrea Maria Chiariello Rossana Piccioni Simona Bianco Laura Furia Giulia De Conti Britta A M Bouwman Giorgio Melloni Davide Guido Luciano Giacò Lucilla Luzi Davide Cittaro Mario Faretta Mario Nicodemi Nicola Crosetto Pier Giuseppe Pelicci

Nat Genet 2019 06 20;51(6):1011-1023. Epub 2019 May 20.

Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan, Italy.

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June 2019

Targeted NGS Platforms for Genetic Screening and Gene Discovery in Primary Immunodeficiencies.

Authors:
Cristina Cifaldi Immacolata Brigida Federica Barzaghi Matteo Zoccolillo Valentina Ferradini Davide Petricone Maria Pia Cicalese Dejan Lazarevic Davide Cittaro Maryam Omrani Enrico Attardi Francesca Conti Alessia Scarselli Maria Chiriaco Silvia Di Cesare Francesco Licciardi Montin Davide Francesca Ferrua Clementina Canessa Claudio Pignata Silvia Giliani Simona Ferrari Georgia Fousteri Graziano Barera Pietro Merli Paolo Palma Simone Cesaro Marco Gattorno Antonio Trizzino Viviana Moschese Loredana Chini Anna Villa Chiara Azzari Andrea Finocchi Franco Locatelli Paolo Rossi Federica Sangiuolo Alessandro Aiuti Caterina Cancrini Gigliola Di Matteo

Front Immunol 2019 11;10:316. Epub 2019 Apr 11.

Unit of Immune and Infectious Diseases, University Department of Pediatrics (DPUO), Scientific Institute for Research and Healthcare (IRCCS) Childrens' Hospital Bambino Gesù, Rome, Italy.

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September 2020

Integrated Somatic and Germline Whole-Exome Sequencing Analysis in Women with Lung Cancer after a Previous Breast Cancer.

Authors:
Simona Coco Silvia Bonfiglio Davide Cittaro Irene Vanni Marco Mora Carlo Genova Maria Giovanna Dal Bello Simona Boccardo Angela Alama Erika Rijavec Claudio Sini Valeria Rossella Giulia Barletta Federica Biello Anna Truini Cristina Bruzzo Maurizio Gallo Dejan Lazarevic Alberto Ballestrero Francesco Grossi

Cancers (Basel) 2019 Mar 28;11(4). Epub 2019 Mar 28.

UOC Oncologia Medica Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, 20122 Milan, Italy.

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March 2019

Immune signature drives leukemia escape and relapse after hematopoietic cell transplantation.

Authors:
Cristina Toffalori Laura Zito Valentina Gambacorta Michela Riba Giacomo Oliveira Gabriele Bucci Matteo Barcella Orietta Spinelli Raffaella Greco Lara Crucitti Nicoletta Cieri Maddalena Noviello Francesco Manfredi Elisa Montaldo Renato Ostuni Matteo M Naldini Bernhard Gentner Miguel Waterhouse Robert Zeiser Jurgen Finke Maher Hanoun Dietrich W Beelen Ivana Gojo Leo Luznik Masahiro Onozawa Takanori Teshima Raynier Devillier Didier Blaise Constantijn J M Halkes Marieke Griffioen Matteo G Carrabba Massimo Bernardi Jacopo Peccatori Cristina Barlassina Elia Stupka Dejan Lazarevic Giovanni Tonon Alessandro Rambaldi Davide Cittaro Chiara Bonini Katharina Fleischhauer Fabio Ciceri Luca Vago

Nat Med 2019 04 25;25(4):603-611. Epub 2019 Mar 25.

Unit of Immunogenetics, Leukemia Genomics and Immunobiology, Division of Immunology, Transplantation and Infectious Disease, IRCCS San Raffaele Scientific Institute, Milano, Italy.

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April 2019

A novel truncating variant of GLI2 associated with Culler-Jones syndrome impairs Hedgehog signalling.

Authors:
Fabiola Valenza Davide Cittaro Elia Stupka Donatella Biancolini Maria Grazia Patricelli Dario Bonanomi Dejan Lazarević

PLoS One 2019 10;14(1):e0210097. Epub 2019 Jan 10.

Centre for Translational Genomics and Bioinformatics, IRCSS San Raffaele Scientific Institute, Milan, Italy.

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September 2019

Tumor suppressor PNRC1 blocks rRNA maturation by recruiting the decapping complex to the nucleolus.

Authors:
Marco Gaviraghi Claudia Vivori Yerma Pareja Sanchez Francesca Invernizzi Angela Cattaneo Benedetta Maria Santoliquido Michela Frenquelli Simona Segalla Angela Bachi Claudio Doglioni Vicent Pelechano Davide Cittaro Giovanni Tonon

EMBO J 2018 12 29;37(23). Epub 2018 Oct 29.

Functional Genomics of Cancer Unit, Division of Experimental Oncology, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS) San Raffaele Scientific Institute, Milan, Italy

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December 2018

Interferon gene therapy reprograms the leukemia microenvironment inducing protective immunity to multiple tumor antigens.

Authors:
Giulia Escobar Luigi Barbarossa Giulia Barbiera Margherita Norelli Marco Genua Anna Ranghetti Tiziana Plati Barbara Camisa Chiara Brombin Davide Cittaro Andrea Annoni Attilio Bondanza Renato Ostuni Bernhard Gentner Luigi Naldini

Nat Commun 2018 07 24;9(1):2896. Epub 2018 Jul 24.

Vita-Salute San Raffaele University, 20132, Milan, Italy.

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July 2018

Amino acid deprivation triggers a novel GCN2-independent response leading to the transcriptional reactivation of non-native DNA sequences.

Authors:
Annarosaria De Vito Massimo Lazzaro Ilaria Palmisano Davide Cittaro Michela Riba Dejan Lazarevic Makoto Bannai Davide Gabellini Maria Vittoria Schiaffino

PLoS One 2018 18;13(7):e0200783. Epub 2018 Jul 18.

Division of Genetics and Cell Biology, IRCCS San Raffaele Scientific Institute, Milan, Italy.

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January 2019

Conserved DNA Methylation Signatures in Early Maternal Separation and in Twins Discordant for CO Sensitivity.

Authors:
Francesca Giannese Alessandra Luchetti Giulia Barbiera Valentina Lampis Claudio Zanettini Gun Peggy Knudsen Simona Scaini Dejan Lazarevic Davide Cittaro Francesca R D'Amato Marco Battaglia

Sci Rep 2018 02 2;8(1):2258. Epub 2018 Feb 2.

Department of Psychiatry, the University of Toronto, Toronto, Canada.

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February 2018

Lentiviral vectors escape innate sensing but trigger p53 in human hematopoietic stem and progenitor cells.

Authors:
Francesco Piras Michela Riba Carolina Petrillo Dejan Lazarevic Ivan Cuccovillo Sara Bartolaccini Elia Stupka Bernhard Gentner Davide Cittaro Luigi Naldini Anna Kajaste-Rudnitski

EMBO Mol Med 2017 09;9(9):1198-1211

San Raffaele Telethon Institute for Gene Therapy, IRCCS San Raffaele Scientific Institute, Milan, Italy

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September 2017

miR-17∼92 family clusters control iNKT cell ontogenesis via modulation of TGF-β signaling.

Authors:
Maya Fedeli Michela Riba Jose Manuel Garcia Manteiga Lei Tian Valentina Viganò Grazisa Rossetti Massimiliano Pagani Changchun Xiao Adrian Liston Elia Stupka Davide Cittaro Sergio Abrignani Paolo Provero Paolo Dellabona Giulia Casorati

Proc Natl Acad Sci U S A 2016 12 5;113(51):E8286-E8295. Epub 2016 Dec 5.

Experimental Immunology Unit, Division of Immunology, Transplantation and Infectious Diseases, San Raffaele Scientific Institute, 20132 Milan, Italy;

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December 2016

Whole exome sequencing of independent lung adenocarcinoma, lung squamous cell carcinoma, and malignant peritoneal mesothelioma: A case report.

Authors:
Irene Vanni Simona Coco Silvia Bonfiglio Davide Cittaro Carlo Genova Federica Biello Marco Mora Valeria Rossella Maria Giovanna Dal Bello Anna Truini Barbara Banelli Dejan Lazarevic Angela Alama Erika Rijavec Giulia Barletta Francesco Grossi

Medicine (Baltimore) 2016 Nov;95(48):e5447

Lung Cancer Unit, IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro, Genova Centre for Translational Genomics and Bioinformatics, IRCCS San Raffaele Scientific Institute, Milan Department of Internal Medicine and Medical Specialties (DIMI), Università di Genova IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro, Genova Department of Pathology, IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro, Genova Laboratory of Tumor Epigenetics, IRCCS AOU San Martino - IST Istituto Nazionale per la Ricerca sul Cancro and Department of Health Sciences, Università di Genova, Genova, Italy.

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November 2016

Histone demethylase JARID1C inactivation triggers genomic instability in sporadic renal cancer.

Authors:
Beatrice Rondinelli Dalia Rosano Elena Antonini Michela Frenquelli Laura Montanini DaChuan Huang Simona Segalla Kosuke Yoshihara Samir B Amin Dejan Lazarevic Bin Tean The Roel G W Verhaak P Andrew Futreal Luciano Di Croce Lynda Chin Davide Cittaro Giovanni Tonon

J Clin Invest 2016 11 1;126(11):4387. Epub 2016 Nov 1.

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November 2016

Large Deletion of MAGT1 Gene in a Patient with Classic Kaposi Sarcoma, CD4 Lymphopenia, and EBV Infection.

Authors:
Immacolata Brigida Maria Chiriaco Silvia Di Cesare Davide Cittaro Gigliola Di Matteo Stefania Giannelli Dejan Lazarevic Matteo Zoccolillo Elia Stupka Alessandro Jenkner Paola Francalanci Susanna Livadiotti Aaron Morawski Juan Ravell Michael Lenardo Caterina Cancrini Alessandro Aiuti Andrea Finocchi

J Clin Immunol 2017 01 21;37(1):32-35. Epub 2016 Oct 21.

Department of Systems Medicine, University of Rome Tor Vergata, Rome, Italy.

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January 2017

Viable phenotype of ILNEB syndrome without nephrotic impairment in siblings heterozygous for unreported integrin alpha3 mutations.

Authors:
Elisa Adele Colombo Luigina Spaccini Ludovica Volpi Gloria Negri Davide Cittaro Dejan Lazarevic Salvatore Zirpoli Andrea Farolfi Cristina Gervasini Maria Vittoria Cubellis Lidia Larizza

Orphanet J Rare Dis 2016 10 7;11(1):136. Epub 2016 Oct 7.

Laboratorio di Citogenetica Medica e Genetica Molecolare, Centro di Ricerche e Tecnologie Biomediche IRCCS-Istituto Auxologico Italiano, Via Zucchi 18, 20095, Cusano Milanino, Italy.

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October 2016

Inheritable Silencing of Endogenous Genes by Hit-and-Run Targeted Epigenetic Editing.

Authors:
Angelo Amabile Alessandro Migliara Paola Capasso Mauro Biffi Davide Cittaro Luigi Naldini Angelo Lombardo

Cell 2016 Sep;167(1):219-232.e14

San Raffaele Telethon Institute for Gene Therapy (SR-Tiget), IRCCS San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy; Vita-Salute San Raffaele University, Via Olgettina 58, 20132 Milan, Italy. Electronic address:

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September 2016

Characterization of human mitochondrial ferritin promoter: identification of transcription factors and evidences of epigenetic control.

Authors:
Michela Guaraldo Paolo Santambrogio Elisabetta Rovelli Augusta Di Savino Giuseppe Saglio Davide Cittaro Antonella Roetto Sonia Levi

Sci Rep 2016 09 14;6:33432. Epub 2016 Sep 14.

San Raffaele Scientific Institute, Division of Neuroscience, 20132 Milano, Italy.

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September 2016

Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples.

Authors:
Silvia Bonfiglio Irene Vanni Valeria Rossella Anna Truini Dejan Lazarevic Maria Giovanna Dal Bello Angela Alama Marco Mora Erika Rijavec Carlo Genova Davide Cittaro Francesco Grossi Simona Coco

BMC Cancer 2016 08 30;16:692. Epub 2016 Aug 30.

Lung Cancer Unit, IRCCS AOU San Martino - IST National Cancer Research Institute, L.go R. Benzi 10, Genoa, 16132, Italy.

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August 2016

miRNA-126 Orchestrates an Oncogenic Program in B Cell Precursor Acute Lymphoblastic Leukemia.

Authors:
Silvia Nucera Alice Giustacchini Francesco Boccalatte Andrea Calabria Cristiana Fanciullo Tiziana Plati Anna Ranghetti Jose Garcia-Manteiga Davide Cittaro Fabrizio Benedicenti Eric R Lechman John E Dick Maurilio Ponzoni Fabio Ciceri Eugenio Montini Bernhard Gentner Luigi Naldini

Cancer Cell 2016 06;29(6):905-921

San Raffaele Telethon Institute for Gene Therapy, 20132 Milan, Italy; Vita Salute San Raffaele University, 20132 Milan, Italy. Electronic address:

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June 2016

Histone Modifications in a Mouse Model of Early Adversities and Panic Disorder: Role for Asic1 and Neurodevelopmental Genes.

Authors:
Davide Cittaro Valentina Lampis Alessandra Luchetti Roberto Coccurello Alessandro Guffanti Armando Felsani Anna Moles Elia Stupka Francesca R D' Amato Marco Battaglia

Sci Rep 2016 04 28;6:25131. Epub 2016 Apr 28.

Department of Psychiatry, University Of Toronto, Toronto, Canada.

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April 2016

A novel genomic inversion in Wiskott-Aldrich-associated autoinflammation.

Authors:
Immacolata Brigida Samantha Scaramuzza Dejan Lazarevic Davide Cittaro Francesca Ferrua Lorena Leonardelli Maria Alessio Ornella Forma Chiara Lanzani Gianluca Viarengo Fabio Ciceri Momcilo Jankovic Fernando Pesce Alessandro Aiuti Maria Pia Cicalese

J Allergy Clin Immunol 2016 08 22;138(2):619-622.e7. Epub 2016 Apr 22.

San Raffaele Telethon Institute for Gene Therapy (SR-TIGET), IRCCS San Raffaele Scientific Institute, Milan, Italy; Pediatric Immunohematology and Bone Marrow Transplantation Unit, IRCCS San Raffaele Scientific Institute, Milan, Italy.

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August 2016

Revealing the acute asthma ignorome: characterization and validation of uninvestigated gene networks.

Authors:
Michela Riba Jose Manuel Garcia Manteiga Berislav Bošnjak Davide Cittaro Pavol Mikolka Connie Le Michelle M Epstein Elia Stupka

Sci Rep 2016 Apr 21;6:24647. Epub 2016 Apr 21.

Center for Translational Genomics and Bioinformatics, San Raffaele Scientific Institute, Milan, Italy.

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April 2016

Chromas from chromatin: sonification of the epigenome.

Authors:
Davide Cittaro Dejan Lazarevic Paolo Provero

F1000Res 2016 3;5:274. Epub 2016 Mar 3.

Center for Translational Genomics and Bioinformatics, San Raffaele Hospital- via olgettina 58, 20138 Milano, Italy; Department of Molecular Biotechnology and Life Sciences, University of Turin - via Nizza 52, 10126 Torino, Italy.

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March 2016

Targeting Macrophages Sensitizes Chronic Lymphocytic Leukemia to Apoptosis and Inhibits Disease Progression.

Authors:
Giovanni Galletti Cristina Scielzo Federica Barbaglio Tania Véliz Rodriguez Michela Riba Dejan Lazarevic Davide Cittaro Giorgia Simonetti Pamela Ranghetti Lydia Scarfò Maurilio Ponzoni Martina Rocchi Angelo Corti Achille Anselmo Nico van Rooijen Christian Klein Carola H Ries Paolo Ghia Michele De Palma Federico Caligaris-Cappio Maria Teresa Sabrina Bertilaccio

Cell Rep 2016 Feb 11;14(7):1748-1760. Epub 2016 Feb 11.

Unit of Lymphoid Malignancies, Division of Experimental Oncology, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy; Vita-Salute San Raffaele University, 20132 Milan, Italy. Electronic address:

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February 2016

The case of an APDS patient: Defects in maturation and function and decreased in vitro anti-mycobacterial activity in the myeloid compartment.

Authors:
Maria Chiriaco Immacolata Brigida Paola Ariganello Silvia Di Cesare Gigliola Di Matteo Francesco Taus Davide Cittaro Dejan Lazarevic Alessia Scarselli Veronica Santilli Enrico Attardi Elia Stupka Stefania Giannelli Maurizio Fraziano Andrea Finocchi Paolo Rossi Alessandro Aiuti Paolo Palma Caterina Cancrini

Clin Immunol 2017 05 28;178:20-28. Epub 2015 Dec 28.

University Department of Pediatrics, Unit of Immune and Infectious Diseases, Childrens' Hospital Bambino Gesù, Rome, Italy. Electronic address:

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May 2017

REST-Governed Gene Expression Profiling in a Neuronal Cell Model Reveals Novel Direct and Indirect Processes of Repression and Up-Regulation.

Authors:
Jose M Garcia-Manteiga Silvia Bonfiglio Lucrezia Folladori Maria L Malosio Dejan Lazarevic Elia Stupka Davide Cittaro Jacopo Meldolesi

Front Cell Neurosci 2015 10;9:438. Epub 2015 Nov 10.

Division of Neurosciences, Vita-Salute San Raffaele University and Scientific Institute San Raffaele Milan, Italy.

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November 2015

Histone demethylase JARID1C inactivation triggers genomic instability in sporadic renal cancer.

Authors:
Beatrice Rondinelli Dalia Rosano Elena Antonini Michela Frenquelli Laura Montanini DaChuan Huang Simona Segalla Kosuke Yoshihara Samir B Amin Dejan Lazarevic Bin Tean The Roel G W Verhaak P Andrew Futreal Luciano Di Croce Lynda Chin Davide Cittaro Giovanni Tonon

J Clin Invest 2015 Dec 9;125(12):4625-37. Epub 2015 Nov 9.

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December 2015

Mycobacterium alsense sp. nov., a scotochromogenic slow grower isolated from clinical respiratory specimens.

Authors:
Enrico Tortoli Elvira Richter Emanuele Borroni Andrea M Cabibbe Eleonora Capitolo Davide Cittaro Regina Engel Oliver Hendricks Doris Hillemann Jette E Kristiansen Alessandro Mariottini Sabine Schubert Daniela M Cirillo

Int J Syst Evol Microbiol 2016 Jan 5;66(1):450-456. Epub 2015 Nov 5.

Emerging Bacterial Pathogens Unit, IRCCS San Raffaele Scientific Institute, Milan, Italy.

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January 2016

Mycobacterium angelicum sp. nov., a non-chromogenic, slow-growing species isolated from fish and related to Mycobacterium szulgai.

Authors:
Fazel Pourahmad Mateja Pate Matjaž Ocepek Emanuele Borroni Andrea M Cabibbe Eleonora Capitolo Davide Cittaro Eliana Frizzera Vlasta Jenčič Alessandro Mariottini Kenji Marumo Guendalina Vaggelli Daniela M Cirillo Enrico Tortoli

Int J Syst Evol Microbiol 2015 Dec 28;65(12):4724-4729. Epub 2015 Sep 28.

Emerging Bacterial Pathogens Unit, IRCCS San Raffaele Scientific Institute, Milan, Italy.

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December 2015

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model.

Authors:
Jose M Garcia-Manteiga Silvia Bonfiglio Maria Luisa Malosio Dejan Lazarevic Elia Stupka Davide Cittaro Jacopo Meldolesi

Biomed Res Int 2015 27;2015:202914. Epub 2015 Aug 27.

Division of Neurosciences, San Raffaele Institute and Vita-Salute San Raffaele University, 20133 Milan, Italy.

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August 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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July 2015

H3K4me3 demethylation by the histone demethylase KDM5C/JARID1C promotes DNA replication origin firing.

Authors:
Beatrice Rondinelli Hélène Schwerer Elena Antonini Marco Gaviraghi Alessio Lupi Michela Frenquelli Davide Cittaro Simona Segalla Jean-Marc Lemaitre Giovanni Tonon

Nucleic Acids Res 2015 Mar 23;43(5):2560-74. Epub 2015 Feb 23.

Functional Genomics of Cancer Unit, Division of Experimental Oncology, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), San Raffaele Scientific Institute, Via Olgettina 60, 20132 Milan, Italy

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March 2015

Exome sequencing and pathway analysis for identification of genetic variability relevant for bronchopulmonary dysplasia (BPD) in preterm newborns: A pilot study.

Authors:
Paola Carrera Chiara Di Resta Chiara Volonteri Emanuela Castiglioni Silvia Bonfiglio Dejan Lazarevic Davide Cittaro Elia Stupka Maurizio Ferrari Marco Somaschini

Clin Chim Acta 2015 Dec 8;451(Pt A):39-45. Epub 2015 Jan 8.

Unit of Genomics for Diagnosis of Human Pathologies, Division of Genetics and Cell Biology, IRCCS Ospedale San Raffaele, Milano, Italy.

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December 2015

Mycobacterium celeriflavum sp. nov., a rapidly growing scotochromogenic bacterium isolated from clinical specimens.

Authors:
Abdolrazagh Hashemi Shahraki Cengiz Çavuşoğlu Emanuele Borroni Parvin Heidarieh Orhan Kaya Koksalan Andrea Maurizio Cabibbe Mohamad Hashemzadeh Alessandro Mariottini Ehsan Mostafavi Davide Cittaro Mohamad Mehdi Feizabadi Dejan Lazarevic Farhad Yaghmaei Gian Lorenzo Molinari Anna Camaggi Enrico Tortoli

Int J Syst Evol Microbiol 2015 Feb 11;65(Pt 2):510-515. Epub 2014 Nov 11.

Emerging Bacterial Pathogens Unit, IRCCS San Raffaele Scientific Institute, Milan, Italy.

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February 2015

Genome wide identification of aberrant alternative splicing events in myotonic dystrophy type 2.

Authors:
Alessandra Perfetti Simona Greco Pasquale Fasanaro Enrico Bugiardini Rosanna Cardani Jose M Garcia-Manteiga Jose M Garcia Manteiga Michela Riba Davide Cittaro Elia Stupka Giovanni Meola Fabio Martelli

PLoS One 2014 10;9(4):e93983. Epub 2014 Apr 10.

Molecular Cardiology Laboratory, IRCCS-Policlinico San Donato, San Donato Milanese, Milan, Italy.

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January 2015

Integrated genomic analysis identifies recurrent mutations and evolution patterns driving the initiation and progression of follicular lymphoma.

Authors:
Jessica Okosun Csaba Bödör Jun Wang Shamzah Araf Cheng-Yuan Yang Chenyi Pan Sören Boller Davide Cittaro Monika Bozek Sameena Iqbal Janet Matthews David Wrench Jacek Marzec Kiran Tawana Nikolay Popov Ciaran O'Riain Derville O'Shea Emanuela Carlotti Andrew Davies Charles H Lawrie Andras Matolcsy Maria Calaminici Andrew Norton Richard J Byers Charles Mein Elia Stupka T Andrew Lister Georg Lenz Silvia Montoto John G Gribben Yuhong Fan Rudolf Grosschedl Claude Chelala Jude Fitzgibbon

Nat Genet 2014 Feb 22;46(2):176-181. Epub 2013 Dec 22.

Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London, London, United Kingdom.

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February 2014

A strong anti-inflammatory signature revealed by liver transcription profiling of Tmprss6-/- mice.

Authors:
Michela Riba Marco Rausa Melissa Sorosina Davide Cittaro Jose Manuel Garcia Manteiga Antonella Nai Alessia Pagani Filippo Martinelli-Boneschi Elia Stupka Clara Camaschella Laura Silvestri

PLoS One 2013 29;8(7):e69694. Epub 2013 Jul 29.

Center for Translational Genomics and Bioinformatics, San Raffaele Scientific Institute, Milan, Italy.

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March 2014

An autoinflammatory neurological disease due to interleukin 6 hypersecretion.

Authors:
Ettore Salsano Ambra Rizzo Gloria Bedini Loris Bernard Valentina Dall'olio Sara Volorio Monica Lazzaroni Isabella Ceccherini Dejan Lazarevic Davide Cittaro Elia Stupka Rosina Paterra Laura Farina Mario Savoiardo Davide Pareyson Francesca L Sciacca

J Neuroinflammation 2013 Feb 21;10:29. Epub 2013 Feb 21.

UO Neurologia VIII, Department of Clinical Neurosciences, IRCCS Foundation, "C, Besta" Neurological Institute, Milan 20133, Italy.

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February 2013

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.

Authors:
Gaetano Ivan Dellino Davide Cittaro Rossana Piccioni Lucilla Luzi Stefania Banfi Simona Segalla Matteo Cesaroni Ramiro Mendoza-Maldonado Mauro Giacca Pier Giuseppe Pelicci

Genome Res 2013 Jan 27;23(1):1-11. Epub 2012 Nov 27.

Department of Experimental Oncology, European Institute of Oncology, 20141 Milan, Italy.

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January 2013

A novel function for FOXP3 in humans: intrinsic regulation of conventional T cells.

Authors:
Alicia N McMurchy Jana Gillies Maria Concetta Gizzi Michela Riba Jose Manuel Garcia-Manteiga Davide Cittaro Dejan Lazarevic Sara Di Nunzio Ignazio S Piras Alessandro Bulfone Maria Grazia Roncarolo Elia Stupka Rosa Bacchetta Megan K Levings

Blood 2013 Feb 20;121(8):1265-75. Epub 2012 Nov 20.

Department of Surgery, University of British Columbia and Child and Family Research Institute, Vancouver, BC, Canada.

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February 2013

Telomeric DNA damage is irreparable and causes persistent DNA-damage-response activation.

Authors:
Marzia Fumagalli Francesca Rossiello Michela Clerici Sara Barozzi Davide Cittaro Jessica M Kaplunov Gabriele Bucci Miryana Dobreva Valentina Matti Christian M Beausejour Utz Herbig Maria Pia Longhese Fabrizio d'Adda di Fagagna

Nat Cell Biol 2012 Mar 18;14(4):355-65. Epub 2012 Mar 18.

IFOM Foundation-FIRC Institute of Molecular Oncology Foundation, Milan 20139, Italy.

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March 2012

Recombinant protein quality evaluation: proposal for a minimal information standard.

Authors:
Ashley M Buckle Mark A Bate Steve Androulakis Mario Cinquanta Jerome Basquin Fabien Bonneau Deb K Chatterjee Davide Cittaro Susanne Gräslund Alicja Gruszka Rebecca Page Sabine Suppmann Jun X Wheeler Deborah Agostini Mike Taussig Chris F Taylor Stephen P Bottomley Antonio Villaverde Ario de Marco

Stand Genomic Sci 2011 Nov 22;5(2):195-7. Epub 2011 Nov 22.

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November 2011

The MIS12 complex is a protein interaction hub for outer kinetochore assembly.

Authors:
Arsen Petrovic Sebastiano Pasqualato Prakash Dube Veronica Krenn Stefano Santaguida Davide Cittaro Silvia Monzani Lucia Massimiliano Jenny Keller Aldo Tarricone Alessio Maiolica Holger Stark Andrea Musacchio

J Cell Biol 2010 Sep;190(5):835-52

Department of Experimental Oncology, European Institute of Oncology (IEO), Milan, Italy.

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September 2010

In silico prediction and experimental validation of natural antisense transcripts in two cancer-associated regions of human chromosome 6.

Authors:
Laura Monti Raffaella Cinquetti Alessandro Guffanti Francesco Nicassio Mattia Cremona Giovanni Lavorgna Fabrizio Bianchi Francesca Vignati Davide Cittaro Roberto Taramelli Francesco Acquati

Int J Oncol 2009 Apr;34(4):1099-108

Department of Biotechnology and Molecular Sciences, University of Insubria, I-21100 Varese, Italy.

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April 2009

Transcription factor binding sites are genetic determinants of retroviral integration in the human genome.

Authors:
Barbara Felice Claudia Cattoglio Davide Cittaro Anna Testa Annarita Miccio Giuliana Ferrari Lucilla Luzi Alessandra Recchia Fulvio Mavilio

PLoS One 2009 24;4(2):e4571. Epub 2009 Feb 24.

IFOM, FIRC Institute of Molecular Oncology Foundation, Milan, Italy.

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April 2009

CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data.

Authors:
Matteo Cesaroni Davide Cittaro Alessandro Brozzi Pier Giuseppe Pelicci Lucilla Luzi

Bioinformatics 2008 Dec 21;24(24):2918-20. Epub 2008 Oct 21.

Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, Italy.

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December 2008

Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching.

Authors:
Alessio Maiolica Davide Cittaro Dario Borsotti Lau Sennels Claudio Ciferri Cataldo Tarricone Andrea Musacchio Juri Rappsilber

Mol Cell Proteomics 2007 Dec 5;6(12):2200-11. Epub 2007 Oct 5.

FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milan, Italy.

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December 2007

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.

Authors:
Davide Rambaldi Barbara Felice Viviane Praz Philip Bucher Davide Cittaro Alessandro Guffanti

BMC Bioinformatics 2007 Mar 8;8 Suppl 1:S17. Epub 2007 Mar 8.

The IFOM-IEO Campus, Via Adamello, 16-20139 Milano, Italy.

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March 2007

Graph-based identification of cancer signaling pathways from published gene expression signatures using PubLiME.

Authors:
Giacomo Finocchiaro Francesco Mattia Mancuso Davide Cittaro Heiko Muller

Nucleic Acids Res 2007 27;35(7):2343-55. Epub 2007 Mar 27.

The FIRC Institute of Molecular Oncology Foundation, Milan, Italy.

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June 2007

Peptide identification using vectors of small fragment ions.

Authors:
Davide Cittaro Dario Borsotti Alessio Maiolica Elisabetta Argenzio Juri Rappsilber

J Proteome Res 2005 May-Jun;4(3):1006-11

Proteomics Group, The FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milan, Italy.

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October 2005

Sequence tag scanning: a new explorative strategy for recognition of unexpected protein alterations by nanoelectrospray ionization-tandem mass spectrometry.

Authors:
Mogjiborahman Salek Vincenzo Di Bartolo Davide Cittaro Dario Borsotti Junhua Wei Oreste Acuto Juri Rappsilber Wolf D Lehmann

Proteomics 2005 Feb;5(3):667-74

Central Spectroscopy, German Cancer Research Center, Heidelberg, Germany.

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February 2005