David Wishart

David Wishart

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David Wishart

Publications by authors named "David Wishart"

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Preparation and characterization of a highly soluble Aβ peptide variant.

Protein Expr Purif 2019 Dec 16;164:105480. Epub 2019 Aug 16.

Department of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E8, Canada; Department of Computing Science, University of Alberta, Edmonton, AB, T6G 2E8, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.pep.2019.105480DOI Listing
December 2019

Transformation of polyphenols found in pigmented gluten-free flours during in vitro large intestinal fermentation.

Food Chem 2019 Nov 24;298:125068. Epub 2019 Jun 24.

Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada; Department of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada.

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http://dx.doi.org/10.1016/j.foodchem.2019.125068DOI Listing
November 2019

First-trimester metabolomic prediction of stillbirth.

J Matern Fetal Neonatal Med 2019 Oct 30;32(20):3435-3441. Epub 2018 Apr 30.

b Department of Obstetrics and Gynecology , King's College Hospital , London , England.

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https://www.tandfonline.com/doi/full/10.1080/14767058.2018.1
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http://dx.doi.org/10.1080/14767058.2018.1465552DOI Listing
October 2019

Metabolomics for Investigating Physiological and Pathophysiological Processes.

Authors:
David S Wishart

Physiol Rev 2019 Oct;99(4):1819-1875

Departments of Biological Sciences and Computing Science, University of Alberta, Edmonton, Alberta, Canada.

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http://dx.doi.org/10.1152/physrev.00035.2018DOI Listing
October 2019

PathBank: a comprehensive pathway database for model organisms.

Nucleic Acids Res 2019 Oct 11. Epub 2019 Oct 11.

Department of Plant Breeding, Wageningen University and Research, 6708 PB Wageningen, Gelderland, Netherlands.

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http://dx.doi.org/10.1093/nar/gkz861DOI Listing
October 2019

A fast, sensitive, single-step colorimetric dipstick assay for quantifying ascorbic acid in urine.

Anal Biochem 2019 Sep 31;580:1-13. Epub 2019 May 31.

Department of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E8, Canada; Department of Computing Science, University of Alberta, Edmonton, AB, T6G 2E8, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.ab.2019.05.015DOI Listing
September 2019

NMR metabolomics: A look ahead.

Authors:
David S Wishart

J Magn Reson 2019 Sep 11;306:155-161. Epub 2019 Jul 11.

Department of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada; Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E8, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.jmr.2019.07.013DOI Listing
September 2019

Metabolomic profiling of the excretory-secretory products of hookworm and whipworm.

Metabolomics 2019 Jun 28;15(7):101. Epub 2019 Jun 28.

Centre for Molecular Therapeutics, Australian Institute of Tropical Health and Medicine, James Cook University, Building E4, McGregor Rd, Smithfield, Cairns, QLD, 4878, Australia.

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http://dx.doi.org/10.1007/s11306-019-1561-yDOI Listing
June 2019

Non-invasive differentiation of non-rejection kidney injury from acute rejection in pediatric renal transplant recipients.

Pediatr Transplant 2019 05 4;23(3):e13364. Epub 2019 Feb 4.

Department of Pediatrics, BC Children's Hospital, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1111/petr.13364DOI Listing
May 2019

Porous Nanophotonic Optomechanical Beams for Enhanced Mass Adsorption.

ACS Sens 2019 May 23;4(5):1197-1202. Epub 2019 Apr 23.

Nanotechnology Research Centre , National Research Council of Canada , Edmonton , Alberta T6G 2M9 , Canada.

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http://dx.doi.org/10.1021/acssensors.8b01366DOI Listing
May 2019

Chemical Composition of Commercial Cow's Milk.

J Agric Food Chem 2019 May 17;67(17):4897-4914. Epub 2019 Apr 17.

Department of Biological Sciences , University of Alberta , Edmonton , Alberta , Canada T6G 2E9.

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http://dx.doi.org/10.1021/acs.jafc.9b00204DOI Listing
May 2019

Solvent Composition Effects on the Structural Properties of the Aβ42 Monomer from the 3D-RISM-KH Molecular Theory of Solvation.

J Phys Chem B 2019 Mar 12;123(11):2491-2506. Epub 2019 Mar 12.

Department of Mechanical Engineering , Edmonton , Alberta T6G 1H9 , Canada.

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http://dx.doi.org/10.1021/acs.jpcb.9b00480DOI Listing
March 2019

CEU Mass Mediator 3.0: A Metabolite Annotation Tool.

J Proteome Res 2019 02 31;18(2):797-802. Epub 2018 Dec 31.

Department of Information Technology, Escuela Politécnica Superior , Universidad San Pablo-CEU, CEU Universities, Campus Montepríncipe , Boadilla del Monte, Madrid 28668 , Spain.

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http://dx.doi.org/10.1021/acs.jproteome.8b00720DOI Listing
February 2019

Edible nuts deliver polyphenols and their transformation products to the large intestine: An in vitro fermentation model combining targeted/untargeted metabolomics.

Food Res Int 2019 02 11;116:786-794. Epub 2018 Sep 11.

Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada; Department of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada.

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http://dx.doi.org/10.1016/j.foodres.2018.09.012DOI Listing
February 2019

Protocols for NMR Analysis in Livestock Metabolomics.

Methods Mol Biol 2019 ;1996:311-324

Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada.

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http://dx.doi.org/10.1007/978-1-4939-9488-5_23DOI Listing
January 2019

Automated Tools for the Analysis of 1D-NMR and 2D-NMR Spectra.

Methods Mol Biol 2019 ;2037:429-449

Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada.

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http://dx.doi.org/10.1007/978-1-4939-9690-2_24DOI Listing
January 2019

Preface.

Anal Chim Acta 2018 Dec;1037:1-2

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https://linkinghub.elsevier.com/retrieve/pii/S00032670183113
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http://dx.doi.org/10.1016/j.aca.2018.09.046DOI Listing
December 2018

A sensitive, high-throughput LC-MS/MS method for measuring catecholamines in low volume serum.

Anal Chim Acta 2018 Dec 20;1037:159-167. Epub 2018 Jan 20.

Department of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E9, Canada; Department of Computing Science, University of Alberta, Edmonton, AB, T6G 2E8, Canada. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00032670183008
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http://dx.doi.org/10.1016/j.aca.2018.01.021DOI Listing
December 2018

A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database.

Anal Chim Acta 2018 Nov 12;1030:1-24. Epub 2018 May 12.

Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada; Department of Computing Science, University of Alberta, Edmonton, AB, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.aca.2018.05.031DOI Listing
November 2018

Erratum to Residue-specific mobility changes in soluble oligomers of the prion protein define regions involved in aggregation, BBAPAP (2018) 982-988.

Biochim Biophys Acta Proteins Proteom 2018 11 1;1866(11):1199-1200. Epub 2018 Aug 1.

Department of Biochemistry, University of Alberta, Edmonton T6G 2H7, Canada.

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http://dx.doi.org/10.1016/j.bbapap.2018.07.008DOI Listing
November 2018

Non-invasive Point-of-Care Device To Diagnose Acute Mesenteric Ischemia.

ACS Sens 2018 11 5;3(11):2296-2302. Epub 2018 Nov 5.

Department of Surgery, Faculty of Medicine & Dentistry , University of Alberta , Edmonton , Alberta T6G 2B7 , Canada.

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http://dx.doi.org/10.1021/acssensors.8b00558DOI Listing
November 2018

Fecal transplant from resveratrol-fed donors improves glycaemia and cardiovascular features of the metabolic syndrome in mice.

Am J Physiol Endocrinol Metab 2018 10 5;315(4):E511-E519. Epub 2018 Jun 5.

Cardiovascular Research Centre, Department of Pediatrics, Faculty of Medicine and Dentistry, University of Alberta , Edmonton, AB , Canada.

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http://dx.doi.org/10.1152/ajpendo.00471.2017DOI Listing
October 2018

Evolution of renal function and urinary biomarker indicators of inflammation on serial kidney biopsies in pediatric kidney transplant recipients with and without rejection.

Pediatr Transplant 2018 08 25;22(5):e13202. Epub 2018 Apr 25.

Department of Pediatrics, University of British Columbia, BC Children's Hospital, Vancouver, BC, Canada.

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http://dx.doi.org/10.1111/petr.13202DOI Listing
August 2018

Non-invasive staging of chronic kidney allograft damage using urine metabolomic profiling.

Pediatr Transplant 2018 08 31;22(5):e13226. Epub 2018 May 31.

Department of Pediatrics, University of British Columbia, BC Children's Hospital, Vancouver, BC, Canada.

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http://dx.doi.org/10.1111/petr.13226DOI Listing
August 2018

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis.

Nucleic Acids Res 2018 07;46(W1):W486-W494

Institute of Parasitology, McGill University, Montreal, Québec, Canada.

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http://dx.doi.org/10.1093/nar/gky310DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030889PMC
July 2018

CypReact: A Software Tool for in Silico Reactant Prediction for Human Cytochrome P450 Enzymes.

J Chem Inf Model 2018 06 18;58(6):1282-1291. Epub 2018 May 18.

Department of Computing Science , University of Alberta , Edmonton , Alberta , Canada T6G 2E8.

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http://dx.doi.org/10.1021/acs.jcim.8b00035DOI Listing
June 2018

Residue-specific mobility changes in soluble oligomers of the prion protein define regions involved in aggregation.

Biochim Biophys Acta Proteins Proteom 2018 Jun 21. Epub 2018 Jun 21.

Department of Biochemistry, University of Alberta, Edmonton T6G 2H7, Canada.

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http://dx.doi.org/10.1016/j.bbapap.2018.06.005DOI Listing
June 2018

Unraveling the unknown areas of the human metabolome: the role of infrared ion spectroscopy.

J Inherit Metab Dis 2018 05 19;41(3):367-377. Epub 2018 Mar 19.

Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525ED, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1007/s10545-018-0161-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5959965PMC
May 2018

The role of the Human Metabolome Database in inborn errors of metabolism.

J Inherit Metab Dis 2018 05 16;41(3):329-336. Epub 2018 Apr 16.

Departments of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E8, Canada.

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http://link.springer.com/10.1007/s10545-018-0137-8
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http://dx.doi.org/10.1007/s10545-018-0137-8DOI Listing
May 2018

Growth of Malignant Non-CNS Tumors Alters Brain Metabolome.

Front Genet 2018 20;9:41. Epub 2018 Feb 20.

Department of Biological Sciences, University of Lethbridge, Lethbridge, AB, Canada.

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http://dx.doi.org/10.3389/fgene.2018.00041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5826252PMC
February 2018

PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database.

Nucleic Acids Res 2018 01;46(D1):D575-D580

Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA.

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http://dx.doi.org/10.1093/nar/gkx1061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753269PMC
January 2018

Rapid and reliable protein structure determination via chemical shift threading.

J Biomol NMR 2018 01 1;70(1):33-51. Epub 2017 Dec 1.

Department of Computing Science, University of Alberta, Edmonton, AB, T6G 2E8, Canada.

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http://dx.doi.org/10.1007/s10858-017-0154-1DOI Listing
January 2018

Metabolic Profile of Ex Vivo Lung Perfusate Yields Biomarkers for Lung Transplant Outcomes.

Ann Surg 2018 Jan;267(1):196-197

*Toronto Lung Transplant Program, Departments of Surgery, Medicine and Physiology, Institute of Medical Science, University of Toronto, Toronto, Ontario, Canada†Latner Thoracic Surgical Research Laboratories, Toronto General Research Institute, University Health Network, Toronto, Ontario, Canada‡The Metabolomics Innovation Center, University of Alberta, Edmonton, Alberta, Canada.

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http://dx.doi.org/10.1097/SLA.0000000000002016DOI Listing
January 2018

Metabolomic prediction of endometrial cancer.

Metabolomics 2017 12 1;14(1). Epub 2017 Dec 1.

Center for Immunotherapy, Roswell Park Cancer Institute, Buffalo, NY, USA.

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http://dx.doi.org/10.1007/s11306-017-1290-zDOI Listing
December 2017

Functionalized gold nanoparticle-enhanced competitive assay for sensitive small-molecule metabolite detection using surface plasmon resonance.

Analyst 2017 Dec;143(1):289-296

Department of Chemistry, 11227 Saskatchewan Drive. and University of Alberta, Edmonton, Alberta T6G 2G2, Canada.

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http://xlink.rsc.org/?DOI=C7AN01680H
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http://dx.doi.org/10.1039/c7an01680hDOI Listing
December 2017

Unraveling the meaning of chemical shifts in protein NMR.

Biochim Biophys Acta Proteins Proteom 2017 Nov 15;1865(11 Pt B):1564-1576. Epub 2017 Jul 15.

Department of Computing Science, University of Alberta, Edmonton T6G 2E9, Canada; Department of Biological Sciences, University of Alberta, Edmonton T6G 2E8, Canada. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15709639173015
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http://dx.doi.org/10.1016/j.bbapap.2017.07.005DOI Listing
November 2017

Initial Structural Models of the Aβ42 Dimer from Replica Exchange Molecular Dynamics Simulations.

ACS Omega 2017 Nov 7;2(11):7621-7636. Epub 2017 Nov 7.

National Institute for Nanotechnology, National Research Council of Canada, Edmonton, Alberta T6G 2M9, Canada.

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http://dx.doi.org/10.1021/acsomega.7b00805DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6645216PMC
November 2017

Urinary Metabolomics for Noninvasive Detection of Antibody-Mediated Rejection in Children After Kidney Transplantation.

Transplantation 2017 10;101(10):2553-2561

1 Department of Pediatrics, University of British Columbia, BC Children's Hospital Vancouver, BC, Canada. 2 Department of Pediatrics and Child Health, University of Manitoba, Children's Hospital at Health Sciences Center, Winnipeg, MB, Canada. 3 Department of Pathology, University of Manitoba, Health Sciences Center, Winnipeg, MB, Canada. 4 The Metabolomics Innovation Center, University of Alberta, Edmonton, AB, Canada. 5 Section of Nephrology, Department of Internal Medicine, University of Manitoba, Health Sciences Center, Winnipeg, MB, Canada. 6 Department of Immunology, University of Manitoba, Winnipeg, Manitoba, Canada. 7 Manitoba Center for Proteomics and Systems Biology, Faculty of Medicine, University of Manitoba, Winnipeg, Manitoba, Canada.

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http://dx.doi.org/10.1097/TP.0000000000001662DOI Listing
October 2017

The compound (3-{5-[(2,5-dimethoxyphenyl)amino]-1,3,4-thiadiazolidin-2-yl}-5,8-methoxy-2H-chromen-2-one) inhibits the prion protein conversion from PrP to PrP with lower IC in ScN2a cells.

Bioorg Med Chem 2017 10 19;25(20):5875-5888. Epub 2017 Sep 19.

Department of Medical Microbiology and Immunology, 6-020 Katz Group Centre, University of Alberta, Edmonton, Alberta T6G 2E1, Canada; Department of Immunology, School of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.

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http://dx.doi.org/10.1016/j.bmc.2017.09.024DOI Listing
October 2017

Livestock metabolomics and the livestock metabolome: A systematic review.

PLoS One 2017 22;12(5):e0177675. Epub 2017 May 22.

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177675PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5439675PMC
September 2017

DI/LC-MS/MS-Based Metabolic Profiling for Identification of Early Predictive Serum Biomarkers of Metritis in Transition Dairy Cows.

J Agric Food Chem 2017 Sep 18;65(38):8510-8521. Epub 2017 Sep 18.

Department of Agricultural, Food and Nutritional Science, University of Alberta , Edmonton, Alberta T6G 2P5, Canada.

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http://pubs.acs.org/doi/abs/10.1021/acs.jafc.7b02000
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http://dx.doi.org/10.1021/acs.jafc.7b02000DOI Listing
September 2017

Dietary and health biomarkers-time for an update.

Genes Nutr 2017 29;12:24. Epub 2017 Sep 29.

Division of Human Nutrition, Wageningen University & Research, Wageningen, The Netherlands.

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http://dx.doi.org/10.1186/s12263-017-0578-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622518PMC
September 2017

Targeted Metabolic Profiling of Post-Mortem Brain from Infants Who Died from Sudden Infant Death Syndrome.

J Proteome Res 2017 07 20;16(7):2587-2596. Epub 2017 Jun 20.

Beaumont Health , 3811 W. 13 Mile Road, Royal Oak, Michigan 48073, United States.

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http://dx.doi.org/10.1021/acs.jproteome.7b00157DOI Listing
July 2017

Dietary and metabolomic determinants of relapse in ulcerative colitis patients: A pilot prospective cohort study.

World J Gastroenterol 2017 Jun;23(21):3890-3899

Ammar Hassanzadeh Keshteli, Floris F van den Brand, Karen L Madsen, Rosica Valcheva, Karen I Kroeker, Thomas Hoevers, Richard N Fedorak, Levinus A Dieleman, Department of Medicine, Division of Gastroenterology and CEGIIR, University of Alberta, Edmonton, AB T6G 2X8, Canada.

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http://dx.doi.org/10.3748/wjg.v23.i21.3890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467075PMC
June 2017

Metabolomic determination of pathogenesis of late-onset preeclampsia.

J Matern Fetal Neonatal Med 2017 Mar 28;30(6):658-664. Epub 2016 Aug 28.

b Harris Birthright Research Centre for Fetal Medicine , Division of Women's Health, King's College Hospital , London , UK.

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http://dx.doi.org/10.1080/14767058.2016.1185411DOI Listing
March 2017

The future of NMR-based metabolomics.

Curr Opin Biotechnol 2017 02 28;43:34-40. Epub 2016 Aug 28.

Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8; Department of Computing Science, University of Alberta, Edmonton, AB, Canada T6G 2E8.

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http://dx.doi.org/10.1016/j.copbio.2016.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5305426PMC
February 2017

Improved Glucose Homeostasis in Obese Mice Treated With Resveratrol Is Associated With Alterations in the Gut Microbiome.

Diabetes 2017 02 30;66(2):418-425. Epub 2016 Nov 30.

Cardiovascular Research Centre, Department of Pediatrics, and the Alberta Diabetes Institute, Faculty of Medicine & Dentistry, University of Alberta, Edmonton, Alberta, Canada

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http://dx.doi.org/10.2337/db16-0680DOI Listing
February 2017

Peptide-based fluorescence biosensors for detection/measurement of nanoparticles.

Anal Bioanal Chem 2017 Feb 30;409(4):903-915. Epub 2016 Nov 30.

Department of Biological Sciences, Faculty of Science, University of Alberta, Z512 Biological Sciences Building, 11455 Saskatchewan Drive, Edmonton, AB, T6G 2E9, Canada.

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http://dx.doi.org/10.1007/s00216-016-0042-7DOI Listing
February 2017

GC-MS Metabolomics Identifies Metabolite Alterations That Precede Subclinical Mastitis in the Blood of Transition Dairy Cows.

J Proteome Res 2017 02 28;16(2):433-446. Epub 2016 Nov 28.

Department of Agricultural, Food and Nutritional Science, University of Alberta , Edmonton, Alberta T6G 2P5, Canada.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.6b00538
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http://dx.doi.org/10.1021/acs.jproteome.6b00538DOI Listing
February 2017

A Web Tool for Generating High Quality Machine-readable Biological Pathways.

J Vis Exp 2017 02 8(120). Epub 2017 Feb 8.

Department of Computer Science, University of Alberta; Department of Biological Sciences, University of Alberta;

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http://dx.doi.org/10.3791/54869DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5409186PMC
February 2017

YMDB 2.0: a significantly expanded version of the yeast metabolome database.

Nucleic Acids Res 2017 01 28;45(D1):D440-D445. Epub 2016 Nov 28.

Departments of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada

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http://dx.doi.org/10.1093/nar/gkw1058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210545PMC
January 2017

Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors.

Nucleic Acids Res 2017 01 24;45(D1):D979-D984. Epub 2016 Oct 24.

International Agency for Research on Cancer (IARC), Nutrition and Metabolism Section, Biomarkers Group, 150 Cours Albert Thomas, F-69372 Lyon Cedex 08, France

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http://dx.doi.org/10.1093/nar/gkw980DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210656PMC
January 2017

Current and Future Perspectives on the Structural Identification of Small Molecules in Biological Systems.

Metabolites 2016 Dec 15;6(4). Epub 2016 Dec 15.

Departments of Computing Science and Biological Sciences, University of Alberta, Edmonton, T6G 2E8 AB, Canada.

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http://dx.doi.org/10.3390/metabo6040046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5192452PMC
December 2016

Nano-Optomechanical Systems for Gas Chromatography.

Nano Lett 2016 11 21;16(11):6975-6981. Epub 2016 Oct 21.

National Institute for Nanotechnology , Edmonton, Alberta T6G 2M9, Canada.

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http://pubs.acs.org/doi/10.1021/acs.nanolett.6b03066
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http://dx.doi.org/10.1021/acs.nanolett.6b03066DOI Listing
November 2016

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy.

J Cheminform 2016 4;8:61. Epub 2016 Nov 4.

Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E8 Canada ; Department of Computing Science, University of Alberta, Edmonton, AB T6G 2E8 Canada ; National Research Council, National Institute for Nanotechnology (NINT), Edmonton, AB T6G 2M9 Canada ; The Metabolomics Innovation Center, University of Alberta, Edmonton, AB T6G 2E9 Canada.

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http://dx.doi.org/10.1186/s13321-016-0174-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5096306PMC
November 2016

Role of polysaccharide and lipid in lipopolysaccharide induced prion protein conversion.

Prion 2016 11;10(6):466-483

a Department of Biological Sciences , University of Alberta , Edmonton , Alberta , Canada.

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http://dx.doi.org/10.1080/19336896.2016.1254857DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161299PMC
November 2016

Metabolic signatures of Huntington's disease (HD): (1)H NMR analysis of the polar metabolome in post-mortem human brain.

Biochim Biophys Acta 2016 09 8;1862(9):1675-84. Epub 2016 Jun 8.

Advanced Asset Technology Centre, Institute for Global Food Security, Queen's University Belfast, Stranmillis Road, Belfast BT9 5AG, UK.

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http://dx.doi.org/10.1016/j.bbadis.2016.06.007DOI Listing
September 2016

Using MetaboAnalyst 3.0 for Comprehensive Metabolomics Data Analysis.

Curr Protoc Bioinformatics 2016 09 7;55:14.10.1-14.10.91. Epub 2016 Sep 7.

Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada.

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http://dx.doi.org/10.1002/cpbi.11DOI Listing
September 2016

Metabolomics enables precision medicine: "A White Paper, Community Perspective".

Metabolomics 2016;12(10):149. Epub 2016 Sep 2.

Psychiatry and Behavioral Sciences, Duke Internal Medicine and Duke Institute for Brain Sciences and Center for Applied Genomics and Precision Medicine, Duke University Medical Center, Box 3903, Durham, NC 27710 USA.

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http://dx.doi.org/10.1007/s11306-016-1094-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009152PMC
September 2016

Computational Prediction of Electron Ionization Mass Spectra to Assist in GC/MS Compound Identification.

Anal Chem 2016 08 21;88(15):7689-97. Epub 2016 Jul 21.

Department of Computing Science, University of Alberta , Edmonton T6G 2E8, Canada.

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http://pubs.acs.org/doi/10.1021/acs.analchem.6b01622
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http://dx.doi.org/10.1021/acs.analchem.6b01622DOI Listing
August 2016

Emerging applications of metabolomics in drug discovery and precision medicine.

Authors:
David S Wishart

Nat Rev Drug Discov 2016 07 11;15(7):473-84. Epub 2016 Mar 11.

Department of Biological Sciences, CW 405, Biological Sciences Building, University of Alberta, Edmonton, Alberta, Canada T6G 2E9.

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http://dx.doi.org/10.1038/nrd.2016.32DOI Listing
July 2016

PHASTER: a better, faster version of the PHAST phage search tool.

Nucleic Acids Res 2016 07 3;44(W1):W16-21. Epub 2016 May 3.

Department of Computing Science, Edmonton, AB T6G 2E8, Canada Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB T6G 2M9, Canada

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http://dx.doi.org/10.1093/nar/gkw387DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987931PMC
July 2016

Heatmapper: web-enabled heat mapping for all.

Nucleic Acids Res 2016 07 17;44(W1):W147-53. Epub 2016 May 17.

Department of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB T6G 2M9, Canada

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http://dx.doi.org/10.1093/nar/gkw419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987948PMC
July 2016

Exome Sequencing and the Management of Neurometabolic Disorders.

N Engl J Med 2016 Jun 25;374(23):2246-55. Epub 2016 May 25.

From the Centre for Molecular Medicine and Therapeutics (M.T.-G., C. Shyr, X.C.Y., L.-H.Z., J.J.Y.L., B.I.D., I.G., W.W.W., C.D.K.), the Departments of Medical Genetics (M.T.-G., C. Shyr, C.J.R., X.C.Y., J.J.Y.L., L.A., J.M.F., S.L., M.M., M.I.V.A., A.M.L., W.W.W.), Pediatrics (C.J.R., G.A.H., R.S., L.-H.Z., A.P.B., B.I.D., M.B.C., M.D., T.D., J.D., A. Michoulas, D.M., J.R., K.R.S., K.S., S.E.T., John Wu, S.S.-I., C.D.K.), and Pathology and Laboratory Medicine (B.R., P.E., H.V., G.S.), the Child and Family Research Institute (M.T.-G., C. Shyr, C.J.R., G.A.H., X.C.Y., A.P.B., J.J.Y.L., B.I.D., L.A., M.B.C., M.D., J.D., J.M.F., I.G., S.L., M.M., D.M., J.R., K.R.S., K.S., S.E.T., M.I.V.A., John Wu, P.E., A.M.L., H.V., S.S.-I., G.S., W.W.W., C.D.K.), and the Division of Endocrinology, Adult Metabolic Diseases Clinic (A. Mattman, S. Sirrs), University of British Columbia, and the Divisions of Biochemical Diseases (G.A.H., R.S., B.S., S.S.-I., C.D.K.), Pediatric Neurology (M.B.C., M.D., A. Michoulas, K.S.), Pediatric Nephrology (J.D.), Pediatric Endocrinology (D.M.), and Immunology (S.E.T.) and the Division of Hematology, Oncology and Transplantation, Michael Cuccione Childhood Cancer Research Program (J.R., K.R.S., John Wu), BC Children's Hospital, Vancouver, the Department of Pathology and Laboratory Medicine, Hospital for Sick Children, University of Toronto, Toronto (J.C.), the Department of Biological and Computing Sciences, University of Alberta (R.M., D.W.), and the National Institute for Nanotechnology (D.W.), Edmonton, AB, and the Department of Biomedical Physiology and Kinesiology, Simon Fraser University, Burnaby, BC (M. Abdelsayed, P.R.) - all in Canada; the Division of Genetics, Department of Pediatrics, King Saud Bin Abdulaziz University for Health Sciences, King Abdulaziz Medical City, Riyadh, Saudi Arabia (M. Alfadhel); the Division of Metabolism and Children's Research Center, University Children's Hospital Zurich, Zurich (M.R.B., P.B.), and the Departmen

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http://dx.doi.org/10.1056/NEJMoa1515792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4983272PMC
June 2016

Using DrugBank for In Silico Drug Exploration and Discovery.

Curr Protoc Bioinformatics 2016 06 20;54:14.4.1-14.4.31. Epub 2016 Jun 20.

Departments of Computing Science and Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

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http://doi.wiley.com/10.1002/cpbi.1
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June 2016

Introduction to Cheminformatics.

Authors:
David S Wishart

Curr Protoc Bioinformatics 2016 Mar 24;53:14.1.1-21. Epub 2016 Mar 24.

Departments of Computing Science and Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

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http://doi.wiley.com/10.1002/0471250953.bi1401s53
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March 2016