David Torrents

David Torrents

David Torrents

David Torrents

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Genomic profiling in advanced stage non-small-cell lung cancer patients with platinum-based chemotherapy identifies germline variants with prognostic value in SMYD2.

Cancer Treat Res Commun 2018 1;15:21-31. Epub 2018 Mar 1.

Genomes For life-GCAT Lab. Program of Predictive and Personalized Medicine of Cancer (PMPPC), Institute for Health Science Research Germans Trias i Pujol (IGTP), Can Ruti Biomedical Campus, Crta de Can Ruti, Camí de les Escoles S/N, 08916 Badalona, Barcelona, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.ctarc.2018.02.003DOI Listing
June 2019

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.

Authors:
Nicole M Warrington Robin N Beaumont Momoko Horikoshi Felix R Day Øyvind Helgeland Charles Laurin Jonas Bacelis Shouneng Peng Ke Hao Bjarke Feenstra Andrew R Wood Anubha Mahajan Jessica Tyrrell Neil R Robertson N William Rayner Zhen Qiao Gunn-Helen Moen Marc Vaudel Carmen J Marsit Jia Chen Michael Nodzenski Theresia M Schnurr Mohammad H Zafarmand Jonathan P Bradfield Niels Grarup Marjolein N Kooijman Ruifang Li-Gao Frank Geller Tarunveer S Ahluwalia Lavinia Paternoster Rico Rueedi Ville Huikari Jouke-Jan Hottenga Leo-Pekka Lyytikäinen Alana Cavadino Sarah Metrustry Diana L Cousminer Ying Wu Elisabeth Thiering Carol A Wang Christian T Have Natalia Vilor-Tejedor Peter K Joshi Jodie N Painter Ioanna Ntalla Ronny Myhre Niina Pitkänen Elisabeth M van Leeuwen Raimo Joro Vasiliki Lagou Rebecca C Richmond Ana Espinosa Sheila J Barton Hazel M Inskip John W Holloway Loreto Santa-Marina Xavier Estivill Wei Ang Julie A Marsh Christoph Reichetzeder Letizia Marullo Berthold Hocher Kathryn L Lunetta Joanne M Murabito Caroline L Relton Manolis Kogevinas Leda Chatzi Catherine Allard Luigi Bouchard Marie-France Hivert Ge Zhang Louis J Muglia Jani Heikkinen Camilla S Morgen Antoine H C van Kampen Barbera D C van Schaik Frank D Mentch Claudia Langenberg Jian'an Luan Robert A Scott Jing Hua Zhao Gibran Hemani Susan M Ring Amanda J Bennett Kyle J Gaulton Juan Fernandez-Tajes Natalie R van Zuydam Carolina Medina-Gomez Hugoline G de Haan Frits R Rosendaal Zoltán Kutalik Pedro Marques-Vidal Shikta Das Gonneke Willemsen Hamdi Mbarek Martina Müller-Nurasyid Marie Standl Emil V R Appel Cilius E Fonvig Caecilie Trier Catharina E M van Beijsterveldt Mario Murcia Mariona Bustamante Sílvia Bonas-Guarch David M Hougaard Josep M Mercader Allan Linneberg Katharina E Schraut Penelope A Lind Sarah E Medland Beverley M Shields Bridget A Knight Jin-Fang Chai Kalliope Panoutsopoulou Meike Bartels Friman Sánchez Jakob Stokholm David Torrents Rebecca K Vinding Sara M Willems Mustafa Atalay Bo L Chawes Peter Kovacs Inga Prokopenko Marcus A Tuke Hanieh Yaghootkar Katherine S Ruth Samuel E Jones Po-Ru Loh Anna Murray Michael N Weedon Anke Tönjes Michael Stumvoll Kim F Michaelsen Aino-Maija Eloranta Timo A Lakka Cornelia M van Duijn Wieland Kiess Antje Körner Harri Niinikoski Katja Pahkala Olli T Raitakari Bo Jacobsson Eleftheria Zeggini George V Dedoussis Yik-Ying Teo Seang-Mei Saw Grant W Montgomery Harry Campbell James F Wilson Tanja G M Vrijkotte Martine Vrijheid Eco J C N de Geus M Geoffrey Hayes Haja N Kadarmideen Jens-Christian Holm Lawrence J Beilin Craig E Pennell Joachim Heinrich Linda S Adair Judith B Borja Karen L Mohlke Johan G Eriksson Elisabeth E Widén Andrew T Hattersley Tim D Spector Mika Kähönen Jorma S Viikari Terho Lehtimäki Dorret I Boomsma Sylvain Sebert Peter Vollenweider Thorkild I A Sørensen Hans Bisgaard Klaus Bønnelykke Jeffrey C Murray Mads Melbye Ellen A Nohr Dennis O Mook-Kanamori Fernando Rivadeneira Albert Hofman Janine F Felix Vincent W V Jaddoe Torben Hansen Charlotta Pisinger Allan A Vaag Oluf Pedersen André G Uitterlinden Marjo-Riitta Järvelin Christine Power Elina Hyppönen Denise M Scholtens William L Lowe George Davey Smith Nicholas J Timpson Andrew P Morris Nicholas J Wareham Hakon Hakonarson Struan F A Grant Timothy M Frayling Debbie A Lawlor Pål R Njølstad Stefan Johansson Ken K Ong Mark I McCarthy John R B Perry David M Evans Rachel M Freathy

Nat Genet 2019 05 1;51(5):804-814. Epub 2019 May 1.

Institute of Biomedical and Clinical Science, College of Medicine and Health, University of Exeter, Royal Devon and Exeter Hospital, Exeter, UK.

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http://dx.doi.org/10.1038/s41588-019-0403-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522365PMC
May 2019

Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.

Ann Rheum Dis 2019 Mar 14;78(3). Epub 2018 Dec 14.

Rheumatology Research Group, Vall d'Hebron Research Institute, Barcelona, Spain

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http://dx.doi.org/10.1136/annrheumdis-2018-214158DOI Listing
March 2019

Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.

J Med Genet 2018 Nov 30;55(11):765-778. Epub 2018 Aug 30.

GenomesForLife-GCAT Lab Group, Program of Predictive and Personalized Medicine of Cancer (PMPPC), Germans Trias i Pujol Research Institute (IGTP), Crta. de Can Ruti, Badalona, Catalunya, Spain.

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http://dx.doi.org/10.1136/jmedgenet-2018-105437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6252362PMC
November 2018

Author Correction: Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.

Nat Genet 2018 09;50(9):1343

COPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41588-018-0197-6DOI Listing
September 2018

A cancer-associated polymorphism in ESCRT-III disrupts the abscission checkpoint and promotes genome instability.

Proc Natl Acad Sci U S A 2018 09 4;115(38):E8900-E8908. Epub 2018 Sep 4.

Department of Infectious Diseases, Faculty of Life Sciences and Medicine, King's College London, SE1 9RT London, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1805504115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6156662PMC
September 2018

A kidney-disease gene panel allows a comprehensive genetic diagnosis of cystic and glomerular inherited kidney diseases.

Kidney Int 2018 08 22;94(2):363-371. Epub 2018 May 22.

Molecular Biology Laboratory, Fundació Puigvert, Instituto de Investigaciones Biomédicas Sant Pau, Universitat Autònoma de Barcelona, Red de Investigación Renal (REDINREN), Instituto de Investigación Carlos III, Barcelona, Catalonia, Spain; Nephrology Department, Fundació Puigvert, Instituto de Investigaciones Biomédicas Sant Pau, Universitat Autònoma de Barcelona, REDinREN, Instituto de Investigación Carlos III, Barcelona, Catalonia, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.kint.2018.02.027DOI Listing
August 2018

Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.

Nat Genet 2018 08 16;50(8):1072-1080. Epub 2018 Jul 16.

COPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41588-018-0157-1DOI Listing
August 2018

A Loss-of-Function Splice Acceptor Variant in Is Protective for Type 2 Diabetes.

Diabetes 2017 11 24;66(11):2903-2914. Epub 2017 Aug 24.

Broad Metabolism Program and Program in Medical and Population Genetics, Broad Institute, Cambridge, MA

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http://dx.doi.org/10.2337/db17-0187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5652606PMC
November 2017

The BLUEPRINT Data Analysis Portal.

Cell Syst 2016 11 15;3(5):491-495.e5. Epub 2016 Nov 15.

Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid 28029, Spain; Spanish Bioinformatics Institute INB-ISCIII ES-ELIXIR, Madrid 28029, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2016.10.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5919098PMC
November 2016

Genome-wide associations for birth weight and correlations with adult disease.

Authors:
Momoko Horikoshi Robin N Beaumont Felix R Day Nicole M Warrington Marjolein N Kooijman Juan Fernandez-Tajes Bjarke Feenstra Natalie R van Zuydam Kyle J Gaulton Niels Grarup Jonathan P Bradfield David P Strachan Ruifang Li-Gao Tarunveer S Ahluwalia Eskil Kreiner Rico Rueedi Leo-Pekka Lyytikäinen Diana L Cousminer Ying Wu Elisabeth Thiering Carol A Wang Christian T Have Jouke-Jan Hottenga Natalia Vilor-Tejedor Peter K Joshi Eileen Tai Hui Boh Ioanna Ntalla Niina Pitkänen Anubha Mahajan Elisabeth M van Leeuwen Raimo Joro Vasiliki Lagou Michael Nodzenski Louise A Diver Krina T Zondervan Mariona Bustamante Pedro Marques-Vidal Josep M Mercader Amanda J Bennett Nilufer Rahmioglu Dale R Nyholt Ronald Ching Wan Ma Claudia Ha Ting Tam Wing Hung Tam Santhi K Ganesh Frank Ja van Rooij Samuel E Jones Po-Ru Loh Katherine S Ruth Marcus A Tuke Jessica Tyrrell Andrew R Wood Hanieh Yaghootkar Denise M Scholtens Lavinia Paternoster Inga Prokopenko Peter Kovacs Mustafa Atalay Sara M Willems Kalliope Panoutsopoulou Xu Wang Lisbeth Carstensen Frank Geller Katharina E Schraut Mario Murcia Catharina Em van Beijsterveldt Gonneke Willemsen Emil V R Appel Cilius E Fonvig Caecilie Trier Carla Mt Tiesler Marie Standl Zoltán Kutalik Sílvia Bonas-Guarch David M Hougaard Friman Sánchez David Torrents Johannes Waage Mads V Hollegaard Hugoline G de Haan Frits R Rosendaal Carolina Medina-Gomez Susan M Ring Gibran Hemani George McMahon Neil R Robertson Christopher J Groves Claudia Langenberg Jian'an Luan Robert A Scott Jing Hua Zhao Frank D Mentch Scott M MacKenzie Rebecca M Reynolds William L Lowe Anke Tönjes Michael Stumvoll Virpi Lindi Timo A Lakka Cornelia M van Duijn Wieland Kiess Antje Körner Thorkild Ia Sørensen Harri Niinikoski Katja Pahkala Olli T Raitakari Eleftheria Zeggini George V Dedoussis Yik-Ying Teo Seang-Mei Saw Mads Melbye Harry Campbell James F Wilson Martine Vrijheid Eco Jcn de Geus Dorret I Boomsma Haja N Kadarmideen Jens-Christian Holm Torben Hansen Sylvain Sebert Andrew T Hattersley Lawrence J Beilin John P Newnham Craig E Pennell Joachim Heinrich Linda S Adair Judith B Borja Karen L Mohlke Johan G Eriksson Elisabeth E Widén Mika Kähönen Jorma S Viikari Terho Lehtimäki Peter Vollenweider Klaus Bønnelykke Hans Bisgaard Dennis O Mook-Kanamori Albert Hofman Fernando Rivadeneira André G Uitterlinden Charlotta Pisinger Oluf Pedersen Christine Power Elina Hyppönen Nicholas J Wareham Hakon Hakonarson Eleanor Davies Brian R Walker Vincent Wv Jaddoe Marjo-Riitta Jarvelin Struan Fa Grant Allan A Vaag Debbie A Lawlor Timothy M Frayling George Davey Smith Andrew P Morris Ken K Ong Janine F Felix Nicholas J Timpson John Rb Perry David M Evans Mark I McCarthy Rachel M Freathy

Nature 2016 10 28;538(7624):248-252. Epub 2016 Sep 28.

Institute of Biomedical and Clinical Science, University of Exeter Medical School, Royal Devon and Exeter Hospital, Exeter, UK.

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http://dx.doi.org/10.1038/nature19806DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164934PMC
October 2016

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1038/ncomms10001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682041PMC
December 2015

Surgery-Induced Weight Loss Is Associated With the Downregulation of Genes Targeted by MicroRNAs in Adipose Tissue.

J Clin Endocrinol Metab 2015 Nov 7;100(11):E1467-76. Epub 2015 Aug 7.

Department of Diabetes, Endocrinology and Nutrition (F.J.O., J.M.M.-N., O.R., G.X., E.G., M.M., W.R., J.M.R.-R.), Institut d'Investigació Biomédica de Girona, Girona, Spain; CIBER de la Fisiopatología de la Obesidad y la Nutrición and Instituto de Salud Carlos III (F.J.O., J.M.M.-N., O.R., D.M., N.M.-C., J.A.F.-F., W.R., F.J.T., M.M.M., J.M.F.-R.), Spain; Joint BSC-CRG-IRB Program on Computational Biology (J.M.M., D.T.), Barcelona Supercomputing Center, Barcelona, Spain; Servei d'Anàlisi de Microarrays (L.N., E.P.), Institut Hospital del Mar d'Investigacions Mèdiques, Barcelona, Spain; Department of Surgery (J.I.R.-H.), Institut d'Investigació Biomédica de Girona, Girona, Spain; Service of Endocrinology and Nutrition (D.M., F.J.T.), Hospital Clínico Universitario Virgen de Victoria de Malaga, Málaga, Spain; Department of Cell Biology, Physiology and Immunology (N.M.-C., M.M.M.), Instituto Maimonides de Investigaciones Biomedicas de Cordoba/Reina Sofia University Hospital, University of Cordoba, Cordoba, Spain; and Institució Catalana de Recerca i Estudis Avançats (D.T.), Barcelona, Spain.

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http://dx.doi.org/10.1210/jc.2015-2357DOI Listing
November 2015

Altered Circulating miRNA Expression Profile in Pregestational and Gestational Obesity.

J Clin Endocrinol Metab 2015 Nov 25;100(11):E1446-56. Epub 2015 Sep 25.

Departments of Pediatrics (G.C.-B., E.P.-G., A.L.-B., J.B.) and Gynecology (A.B.), Dr Josep Trueta Hospital, Department of Diabetes, Endocrinology, and Nutrition (F.-J.O., J.-M.F.-R.), Girona Institute for Biomedical Research (G.C.-B., E.P.-G., A.L.-B., J.B.), and Department of Physical Therapy (A.P.-P.), Escola Universitària de la Salut i l'Esport (EUSES), University of Girona, 17007 Girona, Spain; Centro de Investigación Biomédica en Red de la Fisiopatología de la Obesidad y Nutrición (F.-J.O., J.-M.F.-R.) and Centro de Investigación Biomédica en Red de Diabetes y Enfermedades Metabólicas Asociadas (F.-J.O., J.-M.F.-R.), Instituto de Salud Carlos III, 28029 Madrid, Spain; Joint program on Computational Biology, Barcelona Supercomputing Center and Institut de Recerca Biomèdica de Barcelona (BSC-IRB) (J.-M.M., M.G.-M., D.T.), Barcelona Supercomputing Center, 08003 Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (D.T.), 08916 Barcelona, Spain; Institute of Legal Medicine of Catalonia (J.-M.M.-C.), 17001 Girona, Spain; Department of Development and Regeneration (F.D.Z.), University of Leuven, B-3000 Leuven, Belgium; and Department of Endocrinology (L.I.), Hospital Sant Joan de Déu, University of Barcelona, 08950 Esplugues, Barcelona, Spain.

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http://dx.doi.org/10.1210/jc.2015-2872DOI Listing
November 2015

Somatic signature of brain-specific single nucleotide variations in sporadic Alzheimer's disease.

J Alzheimers Dis 2014 ;42(4):1357-82

Department of Cell Biology, University of Barcelona, Barcelona, Spain Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED, ISCIII), Spain Fundación CIEN, Vallecas, Madrid, Spain Vall d'Hebrón Institut de Recerca (VHIR), Barcelona, Spain.

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http://dx.doi.org/10.3233/JAD-140891DOI Listing
July 2015

Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads.

Nat Biotechnol 2014 Nov 26;32(11):1106-12. Epub 2014 Oct 26.

1] Joint IRB-BSC Program in Computational Biology, Barcelona Supercomputing Center, Barcelona, Spain. [2] Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.

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http://dx.doi.org/10.1038/nbt.3027DOI Listing
November 2014

Adaptation to environmental factors shapes the organization of regulatory regions in microbial communities.

BMC Genomics 2014 Oct 8;15:877. Epub 2014 Oct 8.

Joint IRB-BSC program on Computational Biology, BSC, Jordi Girona, 29, 08034 Barcelona, Spain.

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http://dx.doi.org/10.1186/1471-2164-15-877DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287501PMC
October 2014

Common genetic variants of surfactant protein-D (SP-D) are associated with type 2 diabetes.

PLoS One 2013 5;8(4):e60468. Epub 2013 Apr 5.

Service of Diabetes, Endocrinology and Nutrition (UDEN), Institut d'Investigació Biomédica de Girona (IdIBGi), CIBER de la Fisiopatología de la Obesidad y la Nutrición (CIBERobn, CB06/03/0010) and Instituto de Salud Carlos III (ISCIII), Girona, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060468PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3618429PMC
October 2013

Unravelling the hidden DNA structural/physical code provides novel insights on promoter location.

Nucleic Acids Res 2013 Aug 12;41(15):7220-30. Epub 2013 Jun 12.

Institute for Research in Biomedicine (IRB Barcelona), Barcelona 08028, Spain, Joint IRB-BSC Research Program on Computational Biology, Barcelona 08028, Spain, Bioinformatics and Genomics Group, Center for Genomic Regulation and Universitat Pompeu Fabra, Barcelona 08003, Spain, Barcelona Supercomputing Center, Barcelona 08034, Spain and Department of Biochemistry and Molecular Biology, University of Barcelona, Barcelona 08028, Spain.

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http://dx.doi.org/10.1093/nar/gkt511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753636PMC
August 2013

Enterotypes of the human gut microbiome.

Nature 2011 May 20;473(7346):174-80. Epub 2011 Apr 20.

European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://www-huber.embl.de/pub/pdf/Arumugam_Nature_2011.pdf
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http://www.nature.com/doifinder/10.1038/nature09944
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http://dx.doi.org/10.1038/nature09944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3728647PMC
May 2011

Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution.

Genome Biol 2008 16;9(12):R176. Epub 2008 Dec 16.

Instituto de Investigaciones Biomédicas CSIC-UAM, Arturo Duperier 4, 28029 Madrid, Spain.

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http://dx.doi.org/10.1186/gb-2008-9-12-r176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646280PMC
March 2009

Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily.

J Biol Chem 2008 Nov 25;283(48):33240-8. Epub 2008 Sep 25.

M. E. Müller Institute for Structural Biology, Biozentrum of the University of Basel, CH-4056 Basel, Switzerland.

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http://dx.doi.org/10.1074/jbc.M806917200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2662254PMC
November 2008

DNAlive: a tool for the physical analysis of DNA at the genomic scale.

Bioinformatics 2008 Aug 9;24(15):1731-2. Epub 2008 Jun 9.

Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Parc Científic de Barcelona, Josep Samitier 1-5, Barcelona 08028, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btn259DOI Listing
August 2008

Is there selection for the pace of successive inactivation of the arpAT gene in primates?

J Mol Evol 2008 Jul 20;67(1):23-8. Epub 2008 Jun 20.

Evolutionary Biology Unit, Department of Experimental Sciences and Health, Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.

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http://dx.doi.org/10.1007/s00239-008-9120-6DOI Listing
July 2008

Determining promoter location based on DNA structure first-principles calculations.

Genome Biol 2007 ;8(12):R263

Institute for Research in Biomedicine, Parc Científic de Barcelona, Josep Samitier, Barcelona 08028, Spain.

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http://dx.doi.org/10.1186/gb-2007-8-12-r263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2246265PMC
March 2008

Functional and structural characterization of the first prokaryotic member of the L-amino acid transporter (LAT) family: a model for APC transporters.

J Biol Chem 2007 May 6;282(18):13270-81. Epub 2007 Mar 6.

Institute for Research in Biomedicine, Barcelona Science Park and Department of Biochemistry and Molecular Biology, Faculty of Biology, University of Barcelona, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1074/jbc.M610695200DOI Listing
May 2007

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W609-12

European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkl315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538804PMC
July 2006

Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes.

PLoS Comput Biol 2006 Jun 16;2(6):e76. Epub 2006 May 16.

European Molecular Biology Laboratory, Heidelberg, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.0020076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1484586PMC
June 2006

Identification and functional characterization of a novel low affinity aromatic-preferring amino acid transporter (arpAT). One of the few proteins silenced during primate evolution.

J Biol Chem 2005 May 9;280(19):19364-72. Epub 2005 Mar 9.

Department of Biochemistry and Molecular Biology, Faculty of Biology, and Barcelona Science Park, University of Barcelona, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1074/jbc.M412516200DOI Listing
May 2005

Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

Authors:
Ladeana W Hillier Tina A Graves Robert S Fulton Lucinda A Fulton Kymberlie H Pepin Patrick Minx Caryn Wagner-McPherson Dan Layman Kristine Wylie Mandeep Sekhon Michael C Becker Ginger A Fewell Kimberly D Delehaunty Tracie L Miner William E Nash Colin Kremitzki Lachlan Oddy Hui Du Hui Sun Holland Bradshaw-Cordum Johar Ali Jason Carter Matt Cordes Anthony Harris Amber Isak Andrew van Brunt Christine Nguyen Feiyu Du Laura Courtney Joelle Kalicki Philip Ozersky Scott Abbott Jon Armstrong Edward A Belter Lauren Caruso Maria Cedroni Marc Cotton Teresa Davidson Anu Desai Glendoria Elliott Thomas Erb Catrina Fronick Tony Gaige William Haakenson Krista Haglund Andrea Holmes Richard Harkins Kyung Kim Scott S Kruchowski Cynthia Madsen Strong Neenu Grewal Ernest Goyea Shunfang Hou Andrew Levy Scott Martinka Kelly Mead Michael D McLellan Rick Meyer Jennifer Randall-Maher Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Neha Shah Sharhonda Swearengen-Shahid Jacqueline Snider Joseph T Strong Johanna Thompson Martin Yoakum Shawn Leonard Charlene Pearman Lee Trani Maxim Radionenko Jason E Waligorski Chunyan Wang Susan M Rock Aye-Mon Tin-Wollam Rachel Maupin Phil Latreille Michael C Wendl Shiaw-Pyng Yang Craig Pohl John W Wallis John Spieth Tamberlyn A Bieri Nicolas Berkowicz Joanne O Nelson John Osborne Li Ding Rekha Meyer Aniko Sabo Yoram Shotland Prashant Sinha Patricia E Wohldmann Lisa L Cook Matthew T Hickenbotham James Eldred Donald Williams Thomas A Jones Xinwei She Francesca D Ciccarelli Elisa Izaurralde James Taylor Jeremy Schmutz Richard M Myers David R Cox Xiaoqiu Huang John D McPherson Elaine R Mardis Sandra W Clifton Wesley C Warren Asif T Chinwalla Sean R Eddy Marco A Marra Ivan Ovcharenko Terrence S Furey Webb Miller Evan E Eichler Peer Bork Mikita Suyama David Torrents Robert H Waterston Richard K Wilson

Nature 2005 Apr;434(7034):724-31

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature03466DOI Listing
April 2005

Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.

Nucleic Acids Res 2005 16;33(3):946-54. Epub 2005 Feb 16.

EMBL Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gki236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC549403PMC
March 2005

BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments.

Bioinformatics 2004 Aug 22;20(12):1968-70. Epub 2004 Mar 22.

Biocomputing, European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69012 Heidelberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bth172DOI Listing
August 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
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Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

A genome-wide survey of human pseudogenes.

Genome Res 2003 Dec;13(12):2559-67

EMBL, Heidelberg 69117, Germany.

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http://dx.doi.org/10.1101/gr.1455503DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403797PMC
December 2003

The DNA sequence of human chromosome 7.

Authors:
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Nature 2003 Jul;424(6945):157-64

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01782DOI Listing
July 2003

Basolateral LAT-2 has a major role in the transepithelial flux of L-cystine in the renal proximal tubule cell line OK.

J Am Soc Nephrol 2003 Apr;14(4):837-47

Departament de Bioquímica i Biologia Molecular, Facultat de Biologia, Universitat de Barcelona, Spain.

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http://dx.doi.org/10.1097/01.asn.0000057852.35075.acDOI Listing
April 2003

Initial sequencing and comparative analysis of the mouse genome.

Authors:
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Nature 2002 Dec;420(6915):520-62

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01262DOI Listing
December 2002