Publications by authors named "David Sturgill"

31Publications

Epigenetic Regulation of DNA Repair Pathway Choice by MacroH2A1 Splice Variants Ensures Genome Stability.

Mol Cell 2020 09 9;79(5):836-845.e7. Epub 2020 Jul 9.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2020.06.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7483679PMC
September 2020

TET-Catalyzed 5-Carboxylcytosine Promotes CTCF Binding to Suboptimal Sequences Genome-wide.

iScience 2019 Sep 30;19:326-339. Epub 2019 Jul 30.

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.isci.2019.07.041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6699469PMC
September 2019

HJURP antagonizes CENP-A mislocalization driven by the H3.3 chaperones HIRA and DAXX.

PLoS One 2018 26;13(10):e0205948. Epub 2018 Oct 26.

Chromatin Structure and Epigenetics Mechanisms Unit, Center for Cancer Research, National Cancer Institute National Institutes of Health, Bethesda, MD, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205948PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6203356PMC
April 2019

Membraneless nuclear organelles and the search for phases within phases.

Wiley Interdiscip Rev RNA 2019 03 25;10(2):e1514. Epub 2018 Oct 25.

Department of Cell Biology and Anatomy, Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois.

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http://doi.wiley.com/10.1002/wrna.1514
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http://dx.doi.org/10.1002/wrna.1514DOI Listing
March 2019

Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource.

Nucleic Acids Res 2017 Dec;45(22):12780-12797

Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/nar/gkx900DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5727405PMC
December 2017

Cajal body function in genome organization and transcriptome diversity.

Bioessays 2016 12 21;38(12):1197-1208. Epub 2016 Oct 21.

Department of Cell Biology, Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, IL, USA.

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http://dx.doi.org/10.1002/bies.201600144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5225948PMC
December 2016

Linking Genes and Brain Development of Honeybee Workers: A Whole-Transcriptome Approach.

PLoS One 2016 4;11(8):e0157980. Epub 2016 Aug 4.

Institute of Evolutionary Genetics, Heinrich-Heine University, Düsseldorf, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0157980PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4973980PMC
August 2017

Cajal bodies are linked to genome conformation.

Nat Commun 2016 Mar 21;7:10966. Epub 2016 Mar 21.

Department of Cell Biology, Rosalind Franklin University of Medicine and Science, Chicago Medical School, North Chicago, 60064 Ilinois, USA.

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http://dx.doi.org/10.1038/ncomms10966DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802181PMC
March 2016

TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing.

EMBO J 2016 Feb 28;35(3):335-55. Epub 2015 Dec 28.

Center for Cancer Research, Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, Bethesda, MD, USA

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http://dx.doi.org/10.15252/embj.201593235DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4741300PMC
February 2016

Controlled DNA double-strand break induction in mice reveals post-damage transcriptome stability.

Nucleic Acids Res 2016 Apr 19;44(7):e64. Epub 2015 Dec 19.

Laboratory for Receptor Biology and Gene Expression, National Cancer Institute, 41 Library Drive, Bethesda, MD 20892, USA

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http://dx.doi.org/10.1093/nar/gkv1482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4838352PMC
April 2016

Sxl-Dependent, tra/tra2-Independent Alternative Splicing of the Drosophila melanogaster X-Linked Gene found in neurons.

G3 (Bethesda) 2015 Oct 28;5(12):2865-74. Epub 2015 Oct 28.

Univ Paris-Sud, Centre de Neurosciences Paris-Sud, UMR 8195, Orsay, 91405 France CNRS UMR 8195, Univ Paris-Sud, Orsay, 91405 Cedex, France

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http://dx.doi.org/10.1534/g3.115.023721DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683657PMC
October 2015

Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).

BMC Bioinformatics 2013 Nov 9;14:320. Epub 2013 Nov 9.

National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, 50 South Drive, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1186/1471-2105-14-320DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827500PMC
November 2013

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Science 2010 Dec 22;330(6012):1787-97. Epub 2010 Dec 22.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.

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http://compbio.mit.edu/publications/46_modENCODE_Science_10.
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http://www.sciencemag.org/cgi/doi/10.1126/science.1198374
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http://dx.doi.org/10.1126/science.1198374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192495PMC
December 2010

Evolution of protein-coding genes in Drosophila.

Trends Genet 2008 Mar 4;24(3):114-23. Epub 2008 Feb 4.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1016/j.tig.2007.12.001DOI Listing
March 2008

Demasculinization of X chromosomes in the Drosophila genus.

Nature 2007 Nov;450(7167):238-41

Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Department of Health and Human Services, Bethesda Maryland 20892, USA.

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http://dx.doi.org/10.1038/nature06330DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386140PMC
November 2007

Constraint and turnover in sex-biased gene expression in the genus Drosophila.

Nature 2007 Nov;450(7167):233-7

Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Department of Health and Human Services, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1038/nature06323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386141PMC
November 2007

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1038/nature06341DOI Listing
November 2007

Drosophila mojoless, a retroposed GSK-3, has functionally diverged to acquire an essential role in male fertility.

Mol Biol Evol 2007 Mar 18;24(3):732-42. Epub 2006 Dec 18.

Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1093/molbev/msl201DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2292417PMC
March 2007

Genetic interactions between Drosophila melanogaster menin and Jun/Fos.

Dev Biol 2006 Oct 10;298(1):59-70. Epub 2006 Jun 10.

National Institute of Diabetes and Digestive and Kidney Diseases, Department of Health and Human Services, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.ydbio.2006.06.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2291284PMC
October 2006

Comparative genomics of Drosophila and human core promoters.

Genome Biol 2006 ;7(7):R53

Genome Analysis Unit, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1186/gb-2006-7-7-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1779564PMC
May 2007

Global analysis of X-chromosome dosage compensation.

J Biol 2006 16;5(1). Epub 2006 Feb 16.

Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1186/jbiol30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1414069PMC
July 2006

Molecular targets for rapid identification of Brucella spp.

BMC Microbiol 2006 Feb 22;6:13. Epub 2006 Feb 22.

Department of Computer Science, College of Information Technology, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.

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http://dx.doi.org/10.1186/1471-2180-6-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1413539PMC
February 2006

Core promoter sequences contribute to ovo-B regulation in the Drosophila melanogaster germline.

Genetics 2005 Jan 15;169(1):161-72. Epub 2004 Sep 15.

Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Department of Health and Human Services, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1534/genetics.104.033118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1350745PMC
January 2005