Publications by authors named "David Steffen"

82Publications

Evidence for Anti-Viral Effects of Complete Freund's Adjuvant in the Mouse Model of Enterovirus Infection.

Vaccines (Basel) 2020 Jul 7;8(3). Epub 2020 Jul 7.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.

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http://dx.doi.org/10.3390/vaccines8030364DOI Listing
July 2020

Uterine Torsion Dystocia Complicated by Perosomus Elumbis in an Angus Calf Associated with a Consanguineous Mating.

Case Rep Vet Med 2020 10;2020:6543037. Epub 2020 Feb 10.

Department of Large Animal Clinical Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, TN 37996, USA.

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http://dx.doi.org/10.1155/2020/6543037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035538PMC
February 2020

Design and characterization of a consensus hemagglutinin vaccine immunogen against H3 influenza A viruses of swine.

Vet Microbiol 2019 Dec 12;239:108451. Epub 2019 Oct 12.

Nebraska Center for Virology and Department of Animal Science, University of Nebraska, Lincoln, Nebraska, USA. Electronic address:

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http://dx.doi.org/10.1016/j.vetmic.2019.108451DOI Listing
December 2019

Investigation of congestive heart failure in beef cattle in a feedyard at a moderate altitude in western Nebraska.

J Vet Diagn Invest 2019 Jul 6;31(4):509-522. Epub 2019 Jun 6.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE (Moxley, Steffen).

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http://dx.doi.org/10.1177/1040638719855108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6857034PMC
July 2019

Bioinformatics service center projects go beyond service.

J Biomed Inform 2019 06 29;94:103192. Epub 2019 Apr 29.

School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA.

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http://dx.doi.org/10.1016/j.jbi.2019.103192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6785826PMC
June 2019

Evidence for a de novo, dominant germ-line mutation causative of osteogenesis imperfecta in two Red Angus calves.

Mamm Genome 2019 04 20;30(3-4):81-87. Epub 2019 Feb 20.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68583-0905, USA.

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http://dx.doi.org/10.1007/s00335-019-09794-4DOI Listing
April 2019

Development of a broadly protective modified-live virus vaccine candidate against porcine reproductive and respiratory syndrome virus.

Vaccine 2018 01 22;36(1):66-73. Epub 2017 Nov 22.

Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE, USA; Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, USA. Electronic address:

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http://dx.doi.org/10.1016/j.vaccine.2017.11.028DOI Listing
January 2018

Relative contribution of porcine reproductive and respiratory syndrome virus open reading frames 2-4 to the induction of protective immunity.

Vaccine 2017 08 6;35(34):4408-4413. Epub 2017 Jul 6.

Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE, United States; Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE, United States. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S0264410X173085
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http://dx.doi.org/10.1016/j.vaccine.2017.06.061DOI Listing
August 2017

Experimental acute infection of alpacas with Bovine viral diarrhea virus 1 subgenotype b alters peripheral blood and GALT leukocyte subsets.

J Vet Diagn Invest 2017 Mar 6;29(2):186-192. Epub 2017 Feb 6.

School of Veterinary Medicine and Biomedical Sciences (Topliff, Alkheraif, Steffen, Henningson, Kelling) and Department of Statistics (Eskridge), University of Nebraska-Lincoln, Lincoln, NE.

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http://journals.sagepub.com/doi/10.1177/1040638717690015
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http://dx.doi.org/10.1177/1040638717690015DOI Listing
March 2017

Cross reactivity of immune responses to porcine reproductive and respiratory syndrome virus infection.

Vaccine 2017 02 3;35(5):782-788. Epub 2017 Jan 3.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, United States; Nebraska Center for Virology, University of Nebraska-Lincoln, United States. Electronic address:

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http://dx.doi.org/10.1016/j.vaccine.2016.12.040DOI Listing
February 2017

Localization of CD8 T cell epitope within cardiac myosin heavy chain-α334-352 that induces autoimmune myocarditis in A/J mice.

Int J Cardiol 2016 Jan 18;202:311-21. Epub 2015 Sep 18.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ijcard.2015.09.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4656055PMC
January 2016

A Synthetic Porcine Reproductive and Respiratory Syndrome Virus Strain Confers Unprecedented Levels of Heterologous Protection.

J Virol 2015 Dec 23;89(23):12070-83. Epub 2015 Sep 23.

Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, USA

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http://jvi.asm.org/content/89/23/12070.full.pdf
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http://jvi.asm.org/lookup/doi/10.1128/JVI.01657-15
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http://dx.doi.org/10.1128/JVI.01657-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4645332PMC
December 2015

Lactic acid production from xylose by engineered Saccharomyces cerevisiae without PDC or ADH deletion.

Appl Microbiol Biotechnol 2015 Oct 6;99(19):8023-33. Epub 2015 Jun 6.

Department of Food Science and Human Nutrition, University of Illinois at Urbana-Champaign, 260 Bevier Hall, Urbana, IL, 61801, USA.

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http://dx.doi.org/10.1007/s00253-015-6701-3DOI Listing
October 2015

Moving the needle: a retrospective pre- and post-analysis of improving perceived abilities across 20 leadership skills.

Matern Child Health J 2015 Feb;19(2):343-52

Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1007/s10995-014-1573-1DOI Listing
February 2015

Distribution of lymphoid depletion and viral antigen in alpacas experimentally infected with Bovine viral diarrhea virus 1.

J Vet Diagn Invest 2014 Jan 10;26(1):35-41. Epub 2013 Dec 10.

1David Steffen, Veterinary Diagnostic Center, Fair Street and Campus Loop, University of Nebraska, Lincoln, NE 68583-0907.

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http://dx.doi.org/10.1177/1040638713509626DOI Listing
January 2014

Mimicry epitope from Ehrlichia canis for interphotoreceptor retinoid-binding protein 201-216 prevents autoimmune uveoretinitis by acting as altered peptide ligand.

J Neuroimmunol 2013 Oct 17;263(1-2):98-107. Epub 2013 Aug 17.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, United States.

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http://dx.doi.org/10.1016/j.jneuroim.2013.08.006DOI Listing
October 2013

Novel Conserved Genotypes Correspond to Antibiotic Resistance Phenotypes of E. coli Clinical Isolates.

PLoS One 2013 18;8(6):e65961. Epub 2013 Jun 18.

Interdepartmental Program in Cell and Molecular Biology, Baylor College of Medicine, Houston, Texas, United States of America ; Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065961PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3688849PMC
October 2017

The financial burden of hospitalization associated with odontogenic infections.

J Oral Maxillofac Surg 2013 Apr 4;71(4):656-8. Epub 2013 Feb 4.

Department of Oral and Maxillofacial Surgery, Virginia Commonwealth University School of Dentistry, Richmond, VA 23289-0566, USA.

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http://dx.doi.org/10.1016/j.joms.2012.11.024DOI Listing
April 2013

Pathology in practice: myocarditis attributable to PCV-2 infection in a pig fetus.

J Am Vet Med Assoc 2013 Feb;242(3):317-9

Clemson Veterinary Diagnostic Center, Clemson University, Columbia, SC 29229, USA.

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http://avmajournals.avma.org/doi/abs/10.2460/javma.242.3.317
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http://dx.doi.org/10.2460/javma.242.3.317DOI Listing
February 2013

Coxsackievirus B3 infection leads to the generation of cardiac myosin heavy chain-α-reactive CD4 T cells in A/J mice.

Clin Immunol 2012 Sep 14;144(3):237-49. Epub 2012 Jul 14.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, USA.

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http://dx.doi.org/10.1016/j.clim.2012.07.003DOI Listing
September 2012

Transcriptomine, a web resource for nuclear receptor signaling transcriptomes.

Physiol Genomics 2012 Sep 10;44(17):853-63. Epub 2012 Jul 10.

Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00033.2012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472459PMC
September 2012

Identification of a second mimicry epitope from Acanthamoeba castellanii that induces CNS autoimmunity by generating cross-reactive T cells for MBP 89-101 in SJL mice.

Int Immunol 2011 Dec 4;23(12):729-39. Epub 2011 Nov 4.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, USA.

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http://dx.doi.org/10.1093/intimm/dxr084DOI Listing
December 2011

Identification of novel mimicry epitopes for cardiac myosin heavy chain-α that induce autoimmune myocarditis in A/J mice.

Cell Immunol 2011 30;271(2):438-49. Epub 2011 Aug 30.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, United States.

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http://dx.doi.org/10.1016/j.cellimm.2011.08.013DOI Listing
December 2011

TCA cycle inactivation in Staphylococcus aureus alters nitric oxide production in RAW 264.7 cells.

Mol Cell Biochem 2011 Sep 26;355(1-2):75-82. Epub 2011 Apr 26.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Room 202, Bldg VBS, Lincoln, NE 68583, USA.

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http://dx.doi.org/10.1007/s11010-011-0840-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3598019PMC
September 2011

An evaluation of the National Public Health Leadership Institute--1991-2006: part II. Strengthening public health leadership networks, systems, and infrastructure.

J Public Health Manag Pract 2011 May-Jun;17(3):214-24

North Carolina Institute for Public Health, UNC Gillings School of Global Public Health, University of North Carolina at Chapel Hill, NC 27599, USA.

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http://pdfs.journals.lww.com/jphmp/2011/05000/An_Evaluation_
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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/PHH.0b013e31820759d0DOI Listing
September 2011

The caBIG® Life Science Business Architecture Model.

Bioinformatics 2011 May 29;27(10):1429-35. Epub 2011 Mar 29.

Department of Medicine, Hematology/Oncology, Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3087952PMC
May 2011

Pulmonary adenocarcinoma and endogenous lipid pneumonia in a common genet (Genetta genetta).

J Zoo Wildl Med 2010 Dec;41(4):710-2

Center for Conservation and Research, Henry Doorly Zoo, 3701 South 10th Street, Omaha, Nebraska 68107, USA.

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http://dx.doi.org/10.1638/2008-0046.1DOI Listing
December 2010

Gender differences in CNS autoimmunity induced by mimicry epitope for PLP 139-151 in SJL mice.

J Neuroimmunol 2011 Jan 15;230(1-2):95-104. Epub 2010 Oct 15.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, United States.

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http://dx.doi.org/10.1016/j.jneuroim.2010.09.011DOI Listing
January 2011

Research resource: Tissue-specific transcriptomics and cistromics of nuclear receptor signaling: a web research resource.

Mol Endocrinol 2010 Oct 4;24(10):2065-9. Epub 2010 Aug 4.

Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1210/me.2010-0216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954640PMC
October 2010

A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle.

BMC Genomics 2010 May 27;11:337. Epub 2010 May 27.

Laboratory of Molecular Genetics, Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1186/1471-2164-11-337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2891616PMC
May 2010

An epitope from Acanthamoeba castellanii that cross-react with proteolipid protein 139-151-reactive T cells induces autoimmune encephalomyelitis in SJL mice.

J Neuroimmunol 2010 Feb 14;219(1-2):17-24. Epub 2009 Dec 14.

School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583, United States.

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http://dx.doi.org/10.1016/j.jneuroim.2009.11.006DOI Listing
February 2010

Effect of the viral protein N(pro) on virulence of bovine viral diarrhea virus and induction of interferon type I in calves.

Am J Vet Res 2009 Sep;70(9):1117-23

Department of Veterinary and Biomedical Sciences, College of Agricultural Sciences and Natural Resources, University of Nebraska, Lincoln, NE 68583, USA.

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http://dx.doi.org/10.2460/ajvr.70.9.1117DOI Listing
September 2009

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Prevalence of bovine viral diarrhea virus infections in alpacas in the United States.

J Am Vet Med Assoc 2009 Feb;234(4):519-29

Department of Veterinary and Biomedical Sciences, Institute of Agriculture and Natural Resources, University of Nebraska, Lincoln, NE 68583-0905, USA.

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http://dx.doi.org/10.2460/javma.234.4.519DOI Listing
February 2009

GEMS (Gene Expression MetaSignatures), a Web resource for querying meta-analysis of expression microarray datasets: 17beta-estradiol in MCF-7 cells.

Cancer Res 2009 Jan;69(1):23-6

Department of Molecular and Cellular Biology, Nuclear Receptor Signaling Atlas Bioinformatics Resource, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-08-3492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2782370PMC
January 2009

Mechanisms accounting for fluoroquinolone resistance in Escherichia coli clinical isolates.

Antimicrob Agents Chemother 2009 Jan 6;53(1):235-41. Epub 2008 Oct 6.

Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas 77030-3411, USA.

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http://dx.doi.org/10.1128/AAC.00665-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612180PMC
January 2009

Characterization of protection against systemic infection and disease from experimental bovine viral diarrhea virus type 2 infection by use of a modified-live noncytopathic type 1 vaccine in calves.

Am J Vet Res 2007 Jul;68(7):788-96

Department of Veterinary and Biomedical Sciences, Institute of Agriculture and Natural Resources, University of Nebraska, Lincoln, NE 68583-0905, USA.

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http://dx.doi.org/10.2460/ajvr.68.7.788DOI Listing
July 2007

Defective splicing of Megf7/Lrp4, a regulator of distal limb development, in autosomal recessive mulefoot disease.

Genomics 2006 Nov 11;88(5):600-9. Epub 2006 Sep 11.

Department of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9046, USA.

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http://dx.doi.org/10.1016/j.ygeno.2006.08.005DOI Listing
November 2006

Diagnostic survey of bovine abortion with special reference to Neospora caninum infection: importance, repeated abortion and concurrent infection in aborted fetuses in Southern Brazil.

Vet J 2006 Jul;172(1):114-20

Laboratory of Veterinary Pathology, Veterinary Faculty, Federal University of Rio Grande do Sul (UFRGS), Av. Bento Gonçalves 9090, CEP 91540-000, Porto Alegre, RS, Brazil.

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http://dx.doi.org/10.1016/j.tvjl.2005.03.006DOI Listing
July 2006

The DNA sequence, annotation and analysis of human chromosome 3.

Authors:
Donna M Muzny Steven E Scherer Rajinder Kaul Jing Wang Jun Yu Ralf Sudbrak Christian J Buhay Rui Chen Andrew Cree Yan Ding Shannon Dugan-Rocha Rachel Gill Preethi Gunaratne R Alan Harris Alicia C Hawes Judith Hernandez Anne V Hodgson Jennifer Hume Andrew Jackson Ziad Mohid Khan Christie Kovar-Smith Lora R Lewis Ryan J Lozado Michael L Metzker Aleksandar Milosavljevic George R Miner Margaret B Morgan Lynne V Nazareth Graham Scott Erica Sodergren Xing-Zhi Song David Steffen Sharon Wei David A Wheeler Mathew W Wright Kim C Worley Ye Yuan Zhengdong Zhang Charles Q Adams M Ali Ansari-Lari Mulu Ayele Mary J Brown Guan Chen Zhijian Chen James Clendenning Kerstin P Clerc-Blankenburg Runsheng Chen Zhu Chen Clay Davis Oliver Delgado Huyen H Dinh Wei Dong Heather Draper Stephen Ernst Gang Fu Manuel L Gonzalez-Garay Dawn K Garcia Will Gillett Jun Gu Bailin Hao Eric Haugen Paul Havlak Xin He Steffen Hennig Songnian Hu Wei Huang Laronda R Jackson Leni S Jacob Susan H Kelly Michael Kube Ruth Levy Zhangwan Li Bin Liu Jing Liu Wen Liu Jing Lu Manjula Maheshwari Bao-Viet Nguyen Geoffrey O Okwuonu Anthony Palmeiri Shiran Pasternak Lesette M Perez Karen A Phelps Farah J H Plopper Boqin Qiang Christopher Raymond Ruben Rodriguez Channakhone Saenphimmachak Jireh Santibanez Hua Shen Yan Shen Sandhya Subramanian Paul E Tabor Daniel Verduzco Lenee Waldron Jian Wang Jun Wang Qiaoyan Wang Gabrielle A Williams Gane K-S Wong Zhijian Yao JingKun Zhang Xiuqing Zhang Guoping Zhao Jianling Zhou Yang Zhou David Nelson Hans Lehrach Richard Reinhardt Susan L Naylor Huanming Yang Maynard Olson George Weinstock Richard A Gibbs

Nature 2006 Apr;440(7088):1194-8

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature04728DOI Listing
April 2006

The finished DNA sequence of human chromosome 12.

Authors:
Steven E Scherer Donna M Muzny Christian J Buhay Rui Chen Andrew Cree Yan Ding Shannon Dugan-Rocha Rachel Gill Preethi Gunaratne R Alan Harris Alicia C Hawes Judith Hernandez Anne V Hodgson Jennifer Hume Andrew Jackson Ziad Mohid Khan Christie Kovar-Smith Lora R Lewis Ryan J Lozado Michael L Metzker Aleksandar Milosavljevic George R Miner Kate T Montgomery Margaret B Morgan Lynne V Nazareth Graham Scott Erica Sodergren Xing-Zhi Song David Steffen Ruth C Lovering David A Wheeler Kim C Worley Yi Yuan Zhengdong Zhang Charles Q Adams M Ali Ansari-Lari Mulu Ayele Mary J Brown Guan Chen Zhijian Chen Kerstin P Clerc-Blankenburg Clay Davis Oliver Delgado Huyen H Dinh Heather Draper Manuel L Gonzalez-Garay Paul Havlak Laronda R Jackson Leni S Jacob Susan H Kelly Li Li Zhangwan Li Jing Liu Wen Liu Jing Lu Manjula Maheshwari Bao-Viet Nguyen Geoffrey O Okwuonu Shiran Pasternak Lesette M Perez Farah J H Plopper Jireh Santibanez Hua Shen Paul E Tabor Daniel Verduzco Lenee Waldron Qiaoyan Wang Gabrielle A Williams Jingkun Zhang Jianling Zhou Carlana C Allen Anita G Amin Vivian Anyalebechi Michael Bailey Joseph A Barbaria Kesha E Bimage Nathaniel P Bryant Paula E Burch Carrie E Burkett Kevin L Burrell Eliana Calderon Veronica Cardenas Kelvin Carter Kristal Casias Iracema Cavazos Sandra R Cavazos Heather Ceasar Joseph Chacko Sheryl N Chan Dean Chavez Constantine Christopoulos Joseph Chu Raynard Cockrell Caroline D Cox Michelle Dang Stephanie R Dathorne Robert David Candi Mon'Et Davis Latarsha Davy-Carroll Denise R Deshazo Jeremy E Donlin Lisa D'Souza Kristy A Eaves Amy Egan Alexandra J Emery-Cohen Michael Escotto Nicole Flagg Lisa D Forbes Abdul M Gabisi Melissa Garza Cerissa Hamilton Nicholas Henderson Omar Hernandez Sandra Hines Marilyn E Hogues Mei Huang DeVincent G Idlebird Rudy Johnson Angela Jolivet Sally Jones Ryan Kagan Laquisha M King Belita Leal Heather Lebow Sandra Lee Jaclyn M LeVan Lakeshia C Lewis Pamela London Lorna M Lorensuhewa Hermela Loulseged Demetria A Lovett Alice Lucier Raymond L Lucier Jie Ma Renita C Madu Patricia Mapua Ashley D Martindale Evangelina Martinez Elizabeth Massey Samantha Mawhiney Michael G Meador Sylvia Mendez Christian Mercado Iracema C Mercado Christina E Merritt Zachary L Miner Emmanuel Minja Teresa Mitchell Farida Mohabbat Khatera Mohabbat Baize Montgomery Niki Moore Sidney Morris Mala Munidasa Robin N Ngo Ngoc B Nguyen Elizabeth Nickerson Ogechi O Nwaokelemeh Stanley Nwokenkwo Melissa Obregon Maryann Oguh Njideka Oragunye Rodolfo J Oviedo Bridgette J Parish David N Parker Julia Parrish Kenya L Parks Heidie A Paul Brett A Payton Agapito Perez William Perrin Adam Pickens Eltrick L Primus Ling-Ling Pu Maria Puazo Miyo M Quiles Juana B Quiroz Dina Rabata Kacy Reeves San Juana Ruiz Hongmei Shao Ida Sisson Titilola Sonaike Richard P Sorelle Angelica E Sutton Amanda F Svatek Leah Anne Svetz Kavitha S Tamerisa Tineace R Taylor Brian Teague Nicole Thomas Rachel D Thorn Zulma Y Trejos Brenda K Trevino Ogechi N Ukegbu Jeremy B Urban Lydia I Vasquez Virginia A Vera Donna M Villasana Ling Wang Stephanie Ward-Moore James T Warren Xuehong Wei Flower White Angela L Williamson Regina Wleczyk Hailey S Wooden Steven H Wooden Jennifer Yen Lillienne Yoon Vivienne Yoon Sara E Zorrilla David Nelson Raju Kucherlapati George Weinstock Richard A Gibbs

Nature 2006 Mar;440(7082):346-51

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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March 2006

Nuclear Receptor Signaling Atlas (www.nursa.org): hyperlinking the nuclear receptor signaling community.

Nucleic Acids Res 2006 Jan;34(Database issue):D221-6

Department of Molecular and Cellular Biology, M602, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

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January 2006

Herd-level risk factors for Neospora caninum seroprevalence in dairy farms in southern Brazil.

Prev Vet Med 2006 May 15;74(2-3):130-41. Epub 2005 Dec 15.

Laboratory of Veterinary Pathology, Faculty of Veterinary, Federal University of Rio Grande do Sul (UFRGS), Av. Bento Gonçalves 9090, CEP 91540-000, Porto Alegre, RS, Brazil.

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May 2006

Characterization of protection from systemic infection and disease by use of a modified-live noncytopathic bovine viral diarrhea virus type 1 vaccine in experimentally infected calves.

Am J Vet Res 2005 Oct;66(10):1785-91

Department of Veterinary and Biomedical Sciences, Institute of Agriculture and Natural Resources, University of Nebraska, Lincoln, NE 68583-0905, USA.

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October 2005

The DNA sequence of the human X chromosome.

Authors:
Mark T Ross Darren V Grafham Alison J Coffey Steven Scherer Kirsten McLay Donna Muzny Matthias Platzer Gareth R Howell Christine Burrows Christine P Bird Adam Frankish Frances L Lovell Kevin L Howe Jennifer L Ashurst Robert S Fulton Ralf Sudbrak Gaiping Wen Matthew C Jones Matthew E Hurles T Daniel Andrews Carol E Scott Stephen Searle Juliane Ramser Adam Whittaker Rebecca Deadman Nigel P Carter Sarah E Hunt Rui Chen Andrew Cree Preethi Gunaratne Paul Havlak Anne Hodgson Michael L Metzker Stephen Richards Graham Scott David Steffen Erica Sodergren David A Wheeler Kim C Worley Rachael Ainscough Kerrie D Ambrose M Ali Ansari-Lari Swaroop Aradhya Robert I S Ashwell Anne K Babbage Claire L Bagguley Andrea Ballabio Ruby Banerjee Gary E Barker Karen F Barlow Ian P Barrett Karen N Bates David M Beare Helen Beasley Oliver Beasley Alfred Beck Graeme Bethel Karin Blechschmidt Nicola Brady Sarah Bray-Allen Anne M Bridgeman Andrew J Brown Mary J Brown David Bonnin Elspeth A Bruford Christian Buhay Paula Burch Deborah Burford Joanne Burgess Wayne Burrill John Burton Jackie M Bye Carol Carder Laura Carrel Joseph Chako Joanne C Chapman Dean Chavez Ellson Chen Guan Chen Yuan Chen Zhijian Chen Craig Chinault Alfredo Ciccodicola Sue Y Clark Graham Clarke Chris M Clee Sheila Clegg Kerstin Clerc-Blankenburg Karen Clifford Vicky Cobley Charlotte G Cole Jen S Conquer Nicole Corby Richard E Connor Robert David Joy Davies Clay Davis John Davis Oliver Delgado Denise Deshazo Pawandeep Dhami Yan Ding Huyen Dinh Steve Dodsworth Heather Draper Shannon Dugan-Rocha Andrew Dunham Matthew Dunn K James Durbin Ireena Dutta Tamsin Eades Matthew Ellwood Alexandra Emery-Cohen Helen Errington Kathryn L Evans Louisa Faulkner Fiona Francis John Frankland Audrey E Fraser Petra Galgoczy James Gilbert Rachel Gill Gernot Glöckner Simon G Gregory Susan Gribble Coline Griffiths Russell Grocock Yanghong Gu Rhian Gwilliam Cerissa Hamilton Elizabeth A Hart Alicia Hawes Paul D Heath Katja Heitmann Steffen Hennig Judith Hernandez Bernd Hinzmann Sarah Ho Michael Hoffs Phillip J Howden Elizabeth J Huckle Jennifer Hume Paul J Hunt Adrienne R Hunt Judith Isherwood Leni Jacob David Johnson Sally Jones Pieter J de Jong Shirin S Joseph Stephen Keenan Susan Kelly Joanne K Kershaw Ziad Khan Petra Kioschis Sven Klages Andrew J Knights Anna Kosiura Christie Kovar-Smith Gavin K Laird Cordelia Langford Stephanie Lawlor Margaret Leversha Lora Lewis Wen Liu Christine Lloyd David M Lloyd Hermela Loulseged Jane E Loveland Jamieson D Lovell Ryan Lozado Jing Lu Rachael Lyne Jie Ma Manjula Maheshwari Lucy H Matthews Jennifer McDowall Stuart McLaren Amanda McMurray Patrick Meidl Thomas Meitinger Sarah Milne George Miner Shailesh L Mistry Margaret Morgan Sidney Morris Ines Müller James C Mullikin Ngoc Nguyen Gabriele Nordsiek Gerald Nyakatura Christopher N O'Dell Geoffery Okwuonu Sophie Palmer Richard Pandian David Parker Julia Parrish Shiran Pasternak Dina Patel Alex V Pearce Danita M Pearson Sarah E Pelan Lesette Perez Keith M Porter Yvonne Ramsey Kathrin Reichwald Susan Rhodes Kerry A Ridler David Schlessinger Mary G Schueler Harminder K Sehra Charles Shaw-Smith Hua Shen Elizabeth M Sheridan Ratna Shownkeen Carl D Skuce Michelle L Smith Elizabeth C Sotheran Helen E Steingruber Charles A Steward Roy Storey R Mark Swann David Swarbreck Paul E Tabor Stefan Taudien Tineace Taylor Brian Teague Karen Thomas Andrea Thorpe Kirsten Timms Alan Tracey Steve Trevanion Anthony C Tromans Michele d'Urso Daniel Verduzco Donna Villasana Lenee Waldron Melanie Wall Qiaoyan Wang James Warren Georgina L Warry Xuehong Wei Anthony West Siobhan L Whitehead Mathew N Whiteley Jane E Wilkinson David L Willey Gabrielle Williams Leanne Williams Angela Williamson Helen Williamson Laurens Wilming Rebecca L Woodmansey Paul W Wray Jennifer Yen Jingkun Zhang Jianling Zhou Huda Zoghbi Sara Zorilla David Buck Richard Reinhardt Annemarie Poustka André Rosenthal Hans Lehrach Alfons Meindl Patrick J Minx Ladeana W Hillier Huntington F Willard Richard K Wilson Robert H Waterston Catherine M Rice Mark Vaudin Alan Coulson David L Nelson George Weinstock John E Sulston Richard Durbin Tim Hubbard Richard A Gibbs Stephan Beck Jane Rogers David R Bentley

Nature 2005 Mar;434(7031):325-37

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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March 2005

Outcome of equids with clinical signs of West Nile virus infection and factors associated with death.

J Am Vet Med Assoc 2004 Jul;225(2):267-74

Animal Population Health Institute, Colorado State University, Fort Collins, CO 80523, USA.

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July 2004

Large-scale RT-PCR recovery of full-length cDNA clones.

Biotechniques 2004 Apr;36(4):690-6, 698-700

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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April 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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April 2004

Parelaphostrongylus tenuis in captive pronghorn antelope (Antilocapra americana) in Nebraska.

J Wildl Dis 2002 Oct;38(4):822-5

Diagnostic Laboratory and Department of Pathobiology and Diagnostic Investigation, Michigan State University, P.O. Box 30076, Lansing, Michigan 48909, USA.

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October 2002

Comparative virulence of isolates of bovine viral diarrhea virus type II in experimentally inoculated six- to nine-month-old calves.

Am J Vet Res 2002 Oct;63(10):1379-84

Department of Veterinary and Biomedical Sciences, Institute of Agriculture and Natural Resources, University of Nebraska, Lincoln 68583-0905, USA.

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October 2002

Effect of infection with bovine viral diarrhea virus alone, bovine rotavirus alone, or concurrent infection with both on enteric disease in gnotobiotic neonatal calves.

Am J Vet Res 2002 Aug;63(8):1179-86

Department of Veterinary and Biomedical Sciences, University of Nebraska, Lincoln 68583-0905, USA.

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August 2002

A familial degenerative neuromuscular disease of Gelbvieh cattle.

J Vet Diagn Invest 2002 Mar;14(2):140-9

Rollins Animal Disease Diagnostic Laboratory, North Carolina Department of Agriculture, Raleigh, USA.

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http://dx.doi.org/10.1177/104063870201400208DOI Listing
March 2002