Publications by authors named "David S Horner"

50Publications

VINYL: Variant prIoritizatioN by survivaL analysis.

Bioinformatics 2020 Dec 26. Epub 2020 Dec 26.

Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Bari, Italy.

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December 2020

CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes.

Bioinformatics 2020 Dec 21. Epub 2020 Dec 21.

Institute of Biomembranes, Bioenergetics and Molecular Biotechnology, National Research Council, Via Giovanni Amendola, 122/O 70126, Bari, Italy.

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December 2020

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities.

Brief Bioinform 2020 Dec 7. Epub 2020 Dec 7.

molecular biology at the University of Bari and Research Associate at the Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies of the National Research Council in Bari.

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December 2020

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.

Brief Bioinform 2020 Dec;21(6):1971-1986

Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola e, 70126 Bari, Italy.

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December 2020

The Plant NF-Y DNA Matrix and .

Plants (Basel) 2019 Oct 10;8(10). Epub 2019 Oct 10.

Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133 Milano, Italy.

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October 2019

ESCRT genes and regulation of developmental signaling.

Semin Cell Dev Biol 2018 02 25;74:29-39. Epub 2017 Aug 25.

Dipartimento di Bioscienze, Universita' degli Studi di Milano, Via Celoria 26, 20133 Milano, Italy; IFOM, The FIRC Institute of Molecular Oncology, Via Adamello 16, 20139 Milano, Italy. Electronic address:

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February 2018

CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.

Plant Cell 2017 Jun 19;29(6):1516-1532. Epub 2017 May 19.

Dipartimento di Bioscienze, Università degli Studi di Milano, 20133, Milano, Italy

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June 2017

Single-cell transcriptomics reveals specific RNA editing signatures in the human brain.

RNA 2017 06 3;23(6):860-865. Epub 2017 Mar 3.

Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, 70126 Bari, Italy.

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June 2017

The Evolution of Olfactory Gene Families in Drosophila and the Genomic Basis of chemical-Ecological Adaptation in Drosophila suzukii.

Genome Biol Evol 2016 08 16;8(8):2297-311. Epub 2016 Aug 16.

Agricultural Entomology Unit, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy

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August 2016

De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters.

PLoS One 2013 6;8(12):e80961. Epub 2013 Dec 6.

Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italia.

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September 2014

SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.

Nucleic Acids Res 2012 Oct 25;40(18):e145. Epub 2012 Jun 25.

Department of Biomolecular Sciences and Biotechnology, University of Milan, Milan 20133, Italy.

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October 2012

Assessment of orthologous splicing isoforms in human and mouse orthologous genes.

BMC Genomics 2010 Oct 1;11:534. Epub 2010 Oct 1.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università degli Studi di Milano, Milano, Italia.

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October 2010

The HMGB protein gene family in zebrafish: Evolution and embryonic expression patterns.

Gene Expr Patterns 2011 Jan-Feb;11(1-2):3-11. Epub 2010 Sep 18.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita' degli Studi di Milano, Milano, Italy.

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March 2011

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing.

Nucleic Acids Res 2010 Aug 12;38(14):4755-67. Epub 2010 Apr 12.

Dipartimento di Biochimica e Biologia Molecolare E. Quagliariello, Università degli Studi di Bari, Bari, Italy.

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August 2010

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.

BMC Bioinformatics 2009 Sep 8;10:282. Epub 2009 Sep 8.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università degli Studi di Milano, Via Celoria 26, 20133 Milano, Italia.

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September 2009

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.

BMC Bioinformatics 2009 Jun 16;10 Suppl 6:S2. Epub 2009 Jun 16.

Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy.

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June 2009

Phylogenetic analyses suggest multiple changes of substrate specificity within the glycosyl hydrolase 20 family.

BMC Evol Biol 2008 Jul 22;8:214. Epub 2008 Jul 22.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università di Milano, Via Celoria 26, 20133 Milano, Italy.

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July 2008

Correlated substitution analysis and the prediction of amino acid structural contacts.

Brief Bioinform 2008 Jan 13;9(1):46-56. Epub 2007 Nov 13.

Department of Biomolecular Sciences and Biotechnology, University of Milan, via Celoria 26, 20133 Milano, Italy.

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January 2008

Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus.

BMC Evol Biol 2007 Feb 8;7:16. Epub 2007 Feb 8.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università di Milano, Via Celoria 26, 20133 Milano, Italy.

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February 2007

Inference of the phylogenetic position of oxymonads based on nine genes: support for metamonada and excavata.

Mol Biol Evol 2005 Dec 24;22(12):2508-18. Epub 2005 Aug 24.

Department of Parasitology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.

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December 2005

Phylogenetic analyses: a brief introduction to methods and their application.

Expert Rev Mol Diagn 2004 May;4(3):339-50

Department of Biomolecular Sciences and Biotechnology, University of Milan, Via Celoria 26, 20133 Milano, Italy.

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May 2004

WebVar: A resource for the rapid estimation of relative site variability from multiple sequence alignments.

Bioinformatics 2004 May 10;20(8):1331-3. Epub 2004 Feb 10.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università di Milano, 20113 Milano, Italy.

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May 2004

Hydrogenosomes, mitochondria and early eukaryotic evolution.

IUBMB Life 2003 Jul;55(7):387-95

Department of Zoology, The Natural History Museum, London, SW7 5BD, UK.

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July 2003

Fungal hydrogenosomes contain mitochondrial heat-shock proteins.

Mol Biol Evol 2003 Jul 25;20(7):1051-61. Epub 2003 Apr 25.

Department of Zoology, The Natural History Museum, London, United Kingdom.

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July 2003

Mitochondria and hydrogenosomes are two forms of the same fundamental organelle.

Philos Trans R Soc Lond B Biol Sci 2003 Jan;358(1429):191-201; discussion 201-2

Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK.

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January 2003

Iron hydrogenases--ancient enzymes in modern eukaryotes.

Trends Biochem Sci 2002 Mar;27(3):148-53

Dipartimento di Fisiologia e Biochimica Generali, University of Milan, via Celoria 26, 20133, Milan, Italy.

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March 2002