David S Horner

David S Horner

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David S Horner

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The Plant NF-Y DNA Matrix and .

Authors:
Nerina Gnesutta Matteo Chiara Andrea Bernardini Matteo Balestra David S Horner Roberto Mantovani

Plants (Basel) 2019 Oct 10;8(10). Epub 2019 Oct 10.

Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133 Milano, Italy.

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http://dx.doi.org/10.3390/plants8100406DOI Listing
October 2019

Design of a Broad-Range Bacteriophage Cocktail That Reduces Pseudomonas aeruginosa Biofilms and Treats Acute Infections in Two Animal Models.

Authors:
Francesca Forti Dwayne R Roach Marco Cafora Maria E Pasini David S Horner Ersilia V Fiscarelli Martina Rossitto Lisa Cariani Federica Briani Laurent Debarbieux Daniela Ghisotti

Antimicrob Agents Chemother 2018 06 25;62(6). Epub 2018 May 25.

Department of Biosciences, University of Milan, Milan, Italy

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http://dx.doi.org/10.1128/AAC.02573-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5971607PMC
June 2018

Whole transcriptome profiling of Late-Onset Alzheimer's Disease patients provides insights into the molecular changes involved in the disease.

Authors:
Anita Annese Caterina Manzari Claudia Lionetti Ernesto Picardi David S Horner Matteo Chiara Mariano Francesco Caratozzolo Apollonia Tullo Bruno Fosso Graziano Pesole Anna Maria D'Erchia

Sci Rep 2018 03 9;8(1):4282. Epub 2018 Mar 9.

Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, National Research Council, Via Amendola 165/A, 70126, Bari, Italy.

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http://dx.doi.org/10.1038/s41598-018-22701-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844946PMC
March 2018

ESCRT genes and regulation of developmental signaling.

Authors:
David S Horner Maria E Pasini Monica Beltrame Valeria Mastrodonato Elena Morelli Thomas Vaccari

Semin Cell Dev Biol 2018 02 25;74:29-39. Epub 2017 Aug 25.

Dipartimento di Bioscienze, Universita' degli Studi di Milano, Via Celoria 26, 20133 Milano, Italy; IFOM, The FIRC Institute of Molecular Oncology, Via Adamello 16, 20139 Milano, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.semcdb.2017.08.038DOI Listing
February 2018

Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS.

Authors:
Anna Maria D'Erchia Angela Gallo Caterina Manzari Susanna Raho David S Horner Matteo Chiara Alessio Valletti Italia Aiello Francesca Mastropasqua Loredana Ciaccia Franco Locatelli Francesco Pisani Grazia Paola Nicchia Maria Svelto Graziano Pesole Ernesto Picardi

Sci Rep 2017 08 30;7(1):10046. Epub 2017 Aug 30.

Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy.

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http://dx.doi.org/10.1038/s41598-017-10488-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577269PMC
August 2017

Single-cell transcriptomics reveals specific RNA editing signatures in the human brain.

Authors:
Ernesto Picardi David S Horner Graziano Pesole

RNA 2017 06 3;23(6):860-865. Epub 2017 Mar 3.

Department of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, 70126 Bari, Italy.

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http://dx.doi.org/10.1261/rna.058271.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5435858PMC
June 2017

CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.

Authors:
Nerina Gnesutta Roderick W Kumimoto Swadhin Swain Matteo Chiara Chamindika Siriwardana David S Horner Ben F Holt Roberto Mantovani

Plant Cell 2017 Jun 19;29(6):1516-1532. Epub 2017 May 19.

Dipartimento di Bioscienze, Università degli Studi di Milano, 20133, Milano, Italy

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http://dx.doi.org/10.1105/tpc.16.00864DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502446PMC
June 2017

Corrigendum: No Change in the Mucosal Gut Microbiome is Associated with Celiac Disease-Specific Microbiome Alteration in Adult Patients.

Authors:
Valeria D'Argenio Giorgio Casaburi Vincenza Precone Chiara Pagliuca Roberta Colicchio Daniela Sarnataro Valentina Discepolo Sangman M Kim Ilaria Russo Giovanna Del Vecchio Blanco David S Horner Matteo Chiara Graziano Pesole Paola Salvatore Giovanni Monteleone Carolina Ciacci Gregory J Caporaso Bana Jabrì Francesco Salvatore Lucia Sacchetti

Am J Gastroenterol 2017 01 13;112(1):193. Epub 2016 Dec 13.

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http://dx.doi.org/10.1038/ajg.2016.561DOI Listing
January 2017

Geographic Population Structure in Epstein-Barr Virus Revealed by Comparative Genomics.

Authors:
Matteo Chiara Caterina Manzari Claudia Lionetti Rosella Mechelli Eleni Anastasiadou Maria Chiara Buscarinu Giovanni Ristori Marco Salvetti Ernesto Picardi Anna Maria D'Erchia Graziano Pesole David S Horner

Genome Biol Evol 2016 12 14;8(11):3284-3291. Epub 2016 Dec 14.

Department of Biosciences, University of Milan, Milan, Italy

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http://dx.doi.org/10.1093/gbe/evw226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5203774PMC
December 2016

No Change in the Mucosal Gut Mycobioma Is Associated with Celiac Disease-Specific Microbiome Alteration in Adult Patients.

Authors:
Valeria D'Argenio Giorgio Casaburi Vincenza Precone Chiara Pagliuca Roberta Colicchio Daniela Sarnataro Valentina Discepolo Sangman M Kim Ilaria Russo Giovanna Del Vecchio Blanco David S Horner Matteo Chiara Graziano Pesole Paola Salvatore Giovanni Monteleone Carolina Ciacci Gregory J Caporaso Bana Jabrì Francesco Salvatore Lucia Sacchetti

Am J Gastroenterol 2016 11;111(11):1659-1661

CEINGE-Biotecnologie Avanzate, Napoli, Italy.

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http://dx.doi.org/10.1038/ajg.2016.227DOI Listing
November 2016

The Evolution of Olfactory Gene Families in Drosophila and the Genomic Basis of chemical-Ecological Adaptation in Drosophila suzukii.

Authors:
Sukanya Ramasamy Lino Ometto Cristina M Crava Santosh Revadi Rupinder Kaur David S Horner Davide Pisani Teun Dekker Gianfranco Anfora Omar Rota-Stabelli

Genome Biol Evol 2016 08 16;8(8):2297-311. Epub 2016 Aug 16.

Agricultural Entomology Unit, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy

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http://dx.doi.org/10.1093/gbe/evw160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5010897PMC
August 2016

Metagenomics Reveals Dysbiosis and a Potentially Pathogenic N. flavescens Strain in Duodenum of Adult Celiac Patients.

Authors:
Valeria D'Argenio Giorgio Casaburi Vincenza Precone Chiara Pagliuca Roberta Colicchio Daniela Sarnataro Valentina Discepolo Sangman M Kim Ilaria Russo Giovanna Del Vecchio Blanco David S Horner Matteo Chiara Graziano Pesole Paola Salvatore Giovanni Monteleone Carolina Ciacci Gregory J Caporaso Bana Jabrì Francesco Salvatore Lucia Sacchetti

Am J Gastroenterol 2016 Jun 5;111(6):879-90. Epub 2016 Apr 5.

CEINGE-Biotecnologie Avanzate, Naples, Italy.

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http://dx.doi.org/10.1038/ajg.2016.95DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4897008PMC
June 2016

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity within Fusarium fujikuroi.

Authors:
Matteo Chiara Francesca Fanelli Giuseppina Mulè Antonio F Logrieco Graziano Pesole John F Leslie David S Horner Christopher Toomajian

Genome Biol Evol 2015 Oct 15;7(11):3062-9. Epub 2015 Oct 15.

Department of Plant Pathology, Kansas State University, Manhattan.

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https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
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http://dx.doi.org/10.1093/gbe/evv198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5635591PMC
October 2015

The maize fused leaves1 (fdl1) gene controls organ separation in the embryo and seedling shoot and promotes coleoptile opening.

Authors:
Nicoletta La Rocca Priscilla S Manzotti Marina Cavaiuolo Alessandra Barbante Francesca Dalla Vecchia Damiano Gabotti Ghislaine Gendrot David S Horner Jelena Krstajic Martina Persico Nicoletta Rascio Peter Rogowsky Alessio Scarafoni Gabriella Consonni

J Exp Bot 2015 Sep 20;66(19):5753-67. Epub 2015 Jun 20.

Dipartimento di Scienze Agrarie e Ambientali (DISAA), Produzione, Territorio, Energia Università degli Studi di Milano, Via Celoria 2, 20133 Milan, Italy

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http://dx.doi.org/10.1093/jxb/erv278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566974PMC
September 2015

Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer.

Authors:
Matteo Chiara Marta Caruso Anna Maria D'Erchia Caterina Manzari Rosa Fraccalvieri Elisa Goffredo Laura Latorre Angela Miccolupo Iolanda Padalino Gianfranco Santagada Doriano Chiocco Graziano Pesole David S Horner Antonio Parisi

Genome Biol Evol 2015 Jul 15;7(8):2154-72. Epub 2015 Jul 15.

Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Foggia, Italy

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http://dx.doi.org/10.1093/gbe/evv131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4558849PMC
July 2015

Draft genome sequence of Acinetobacter sp. neg1 capable of degrading ochratoxin A.

Authors:
Francesca Fanelli Matteo Chiara Vania C Liuzzi Miriam Haidukowski Mariana Tristezza Manzari Caterina Anna Maria D'Erchia Graziano Pesole David S Horner Giuseppina Mule

FEMS Microbiol Lett 2015 Apr 18;362(7). Epub 2015 Jan 18.

Institute of Sciences of Food Production, National Research Council, Bari, 70126, Italy

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https://academic.oup.com/femsle/article/doi/10.1093/femsle/f
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http://dx.doi.org/10.1093/femsle/fnv004DOI Listing
April 2015

Draft genome sequence of Sphingobium sp. strain ba1, resistant to kanamycin and nickel ions.

Authors:
Caterina Manzari Matteo Chiara Alessandra Costanza Claudia Leoni Mariateresa Volpicella Ernesto Picardi Anna Maria D'Erchia Antonio Placido Massimo Trotta David S Horner Graziano Pesole Luigi R Ceci

FEMS Microbiol Lett 2014 12 8;361(1):8-9. Epub 2015 Jan 8.

Institute of Biomembranes and Bioenergetics, National Research Council, Bari, Italy

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http://dx.doi.org/10.1111/1574-6968.12618DOI Listing
December 2014

De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters.

Authors:
Matteo Chiara David S Horner Alberto Spada

PLoS One 2013 6;8(12):e80961. Epub 2013 Dec 6.

Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0080961PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855653PMC
September 2014

Gene coexpression patterns during early development of the native Arabidopsis reproductive meristem: novel candidate developmental regulators and patterns of functional redundancy.

Authors:
Otho Mantegazza Veronica Gregis Matteo Chiara Caterina Selva Giulia Leo David S Horner Martin M Kater

Plant J 2014 Sep 28;79(5):861-77. Epub 2014 Jul 28.

Dipartimento di Bioscienze, Università degli Studi di Milano, Via Celoria 26, 20133, Milano, Italy.

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http://dx.doi.org/10.1111/tpj.12585DOI Listing
September 2014

Draft Genome Sequences of Six Listeria monocytogenes Strains Isolated from Dairy Products from a Processing Plant in Southern Italy.

Authors:
Matteo Chiara Anna Maria D'Erchia Caterina Manzari Alice Minotto Cosimo Montagna Nicoletta Addante Gianfranco Santagada Laura Latorre Graziano Pesole David S Horner Antonio Parisi

Genome Announc 2014 Apr 10;2(2). Epub 2014 Apr 10.

Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy.

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http://dx.doi.org/10.1128/genomeA.00282-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983309PMC
April 2014

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

Authors:
Ignazio Verde Albert G Abbott Simone Scalabrin Sook Jung Shengqiang Shu Fabio Marroni Tatyana Zhebentyayeva Maria Teresa Dettori Jane Grimwood Federica Cattonaro Andrea Zuccolo Laura Rossini Jerry Jenkins Elisa Vendramin Lee A Meisel Veronique Decroocq Bryon Sosinski Simon Prochnik Therese Mitros Alberto Policriti Guido Cipriani Luca Dondini Stephen Ficklin David M Goodstein Pengfei Xuan Cristian Del Fabbro Valeria Aramini Dario Copetti Susana Gonzalez David S Horner Rachele Falchi Susan Lucas Erica Mica Jonathan Maldonado Barbara Lazzari Douglas Bielenberg Raul Pirona Mara Miculan Abdelali Barakat Raffaele Testolin Alessandra Stella Stefano Tartarini Pietro Tonutti Pere Arús Ariel Orellana Christina Wells Dorrie Main Giannina Vizzotto Herman Silva Francesco Salamini Jeremy Schmutz Michele Morgante Daniel S Rokhsar

Nat Genet 2013 May 24;45(5):487-94. Epub 2013 Mar 24.

Consiglio per la Ricerca e la Sperimentazione in Agricoltura (CRA)-Centro di Ricerca per la Frutticoltura, Rome, Italy.

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http://dx.doi.org/10.1038/ng.2586DOI Listing
May 2013

SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.

Authors:
Matteo Chiara Graziano Pesole David S Horner

Nucleic Acids Res 2012 Oct 25;40(18):e145. Epub 2012 Jun 25.

Department of Biomolecular Sciences and Biotechnology, University of Milan, Milan 20133, Italy.

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http://dx.doi.org/10.1093/nar/gks606DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467043PMC
October 2012

The HMGB protein gene family in zebrafish: Evolution and embryonic expression patterns.

Authors:
Silvia Moleri Giuseppe Cappellano Germano Gaudenzi Solei Cermenati Franco Cotelli David S Horner Monica Beltrame

Gene Expr Patterns 2011 Jan-Feb;11(1-2):3-11. Epub 2010 Sep 18.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita' degli Studi di Milano, Milano, Italy.

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http://dx.doi.org/10.1016/j.gep.2010.08.006DOI Listing
March 2011

Cross talk between the KNOX and ethylene pathways is mediated by intron-binding transcription factors in barley.

Authors:
Michela Osnato Maria Rosaria Stile Yamei Wang Donaldo Meynard Serena Curiale Emmanuel Guiderdoni Yongxiu Liu David S Horner Pieter B F Ouwerkerk Carlo Pozzi Kai J Müller Francesco Salamini Laura Rossini

Plant Physiol 2010 Dec 4;154(4):1616-32. Epub 2010 Oct 4.

Dipartimento di Produzione Vegetale, University of Milan, 20133 Milan, Italy.

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http://dx.doi.org/10.1104/pp.110.161984DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996029PMC
December 2010

Assessment of orthologous splicing isoforms in human and mouse orthologous genes.

Authors:
Federico Zambelli Giulio Pavesi Carmela Gissi David S Horner Graziano Pesole

BMC Genomics 2010 Oct 1;11:534. Epub 2010 Oct 1.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università degli Studi di Milano, Milano, Italia.

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http://dx.doi.org/10.1186/1471-2164-11-534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091683PMC
October 2010

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing.

Authors:
Ernesto Picardi David S Horner Matteo Chiara Riccardo Schiavon Giorgio Valle Graziano Pesole

Nucleic Acids Res 2010 Aug 12;38(14):4755-67. Epub 2010 Apr 12.

Dipartimento di Biochimica e Biologia Molecolare E. Quagliariello, Università degli Studi di Bari, Bari, Italy.

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http://dx.doi.org/10.1093/nar/gkq202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2919710PMC
August 2010

Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.

Authors:
Erica Mica Viviana Piccolo Massimo Delledonne Alberto Ferrarini Mario Pezzotti Cesare Casati Cristian Del Fabbro Giorgio Valle Alberto Policriti Michele Morgante Graziano Pesole M Enrico Pè David S Horner

BMC Genomics 2010 Feb 12;11:109. Epub 2010 Feb 12.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università degli Studi di Milano, Milano, Italy.

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http://dx.doi.org/10.1186/1471-2164-11-109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2831844PMC
February 2010

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Authors:
Giorgio Grillo Antonio Turi Flavio Licciulli Flavio Mignone Sabino Liuni Sandro Banfi Vincenzo Alessandro Gennarino David S Horner Giulio Pavesi Ernesto Picardi Graziano Pesole

Nucleic Acids Res 2010 Jan 30;38(Database issue):D75-80. Epub 2009 Oct 30.

Istituto Tecnologie Biomediche del Consiglio Nazionale delle Ricerche, via Amendola 122/D, 70126 Bari, Italy.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkp902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808995PMC
January 2010

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.

Authors:
Erica Mica Viviana Piccolo Massimo Delledonne Alberto Ferrarini Mario Pezzotti Cesare Casati Cristian Del Fabbro Giorgio Valle Alberto Policriti Michele Morgante Graziano Pesole M Enrico Pè David S Horner

BMC Genomics 2009 Nov 25;10:558. Epub 2009 Nov 25.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università degli Studi di Milano, Milano, Italy.

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http://dx.doi.org/10.1186/1471-2164-10-558DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2822795PMC
November 2009

Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics.

Authors:
Matteo Rè Graziano Pesole David S Horner

BMC Bioinformatics 2009 Sep 8;10:282. Epub 2009 Sep 8.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università degli Studi di Milano, Via Celoria 26, 20133 Milano, Italia.

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http://dx.doi.org/10.1186/1471-2105-10-282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2758873PMC
September 2009

Statistical assessment of discriminative features for protein-coding and non coding cross-species conserved sequence elements.

Authors:
Teresa M Creanza David S Horner Annarita D'Addabbo Rosalia Maglietta Flavio Mignone Nicola Ancona Graziano Pesole

BMC Bioinformatics 2009 Jun 16;10 Suppl 6:S2. Epub 2009 Jun 16.

Istituto di Studi sui Sistemi Intelligenti per l'Automazione, CNR, Via Amendola 122/D-I, Bari, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-S6-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697643PMC
June 2009

Phylogenetic analyses suggest multiple changes of substrate specificity within the glycosyl hydrolase 20 family.

Authors:
Jari Intra Giulio Pavesi David S Horner

BMC Evol Biol 2008 Jul 22;8:214. Epub 2008 Jul 22.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università di Milano, Via Celoria 26, 20133 Milano, Italy.

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http://dx.doi.org/10.1186/1471-2148-8-214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2492878PMC
July 2008

Correlated substitution analysis and the prediction of amino acid structural contacts.

Authors:
David S Horner Walter Pirovano Graziano Pesole

Brief Bioinform 2008 Jan 13;9(1):46-56. Epub 2007 Nov 13.

Department of Biomolecular Sciences and Biotechnology, University of Milan, via Celoria 26, 20133 Milano, Italy.

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http://dx.doi.org/10.1093/bib/bbm052DOI Listing
January 2008

Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus.

Authors:
David S Horner Konstantinos Lefkimmiatis Aurelio Reyes Carmela Gissi Cecilia Saccone Graziano Pesole

BMC Evol Biol 2007 Feb 8;7:16. Epub 2007 Feb 8.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università di Milano, Via Celoria 26, 20133 Milano, Italy.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-7-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1802082PMC
February 2007

A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution.

Authors:
Jan O Andersson Asa M Sjögren David S Horner Colleen A Murphy Patricia L Dyal Staffan G Svärd John M Logsdon Mark A Ragan Robert P Hirt Andrew J Roger

BMC Genomics 2007 Feb 14;8:51. Epub 2007 Feb 14.

Institute of Cell and Molecular Biology, Uppsala University, Biomedical Center, Uppsala, Sweden.

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http://dx.doi.org/10.1186/1471-2164-8-51DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1805757PMC
February 2007

Inference of the phylogenetic position of oxymonads based on nine genes: support for metamonada and excavata.

Authors:
Vladimír Hampl David S Horner Patricia Dyal Jaroslav Kulda Jaroslav Flegr Peter G Foster T Martin Embley

Mol Biol Evol 2005 Dec 24;22(12):2508-18. Epub 2005 Aug 24.

Department of Parasitology, Faculty of Science, Charles University in Prague, Prague, Czech Republic.

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http://dx.doi.org/10.1093/molbev/msi245DOI Listing
December 2005

A novel ADP/ATP transporter in the mitosome of the microaerophilic human parasite Entamoeba histolytica.

Authors:
Ka Wai Chan Dirk-Jan Slotboom Sian Cox T Martin Embley Olivier Fabre Mark van der Giezen Marilyn Harding David S Horner Edmund R S Kunji Gloria León-Avila Jorge Tovar

Curr Biol 2005 Apr;15(8):737-42

Dunn Human Nutrition Unit, Medical Research Council, Cambridge, UK.

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http://www.rug.nl/research/portal/files/2892142/2005CurrBiol
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http://linkinghub.elsevier.com/retrieve/pii/S096098220500388
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http://dx.doi.org/10.1016/j.cub.2005.02.068DOI Listing
April 2005

WebVar: A resource for the rapid estimation of relative site variability from multiple sequence alignments.

Authors:
Flavio Mignone David S Horner Graziano Pesole

Bioinformatics 2004 May 10;20(8):1331-3. Epub 2004 Feb 10.

Dipartimento di Scienze Biomolecolari e Biotecnologie, Università di Milano, 20113 Milano, Italy.

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http://dx.doi.org/10.1093/bioinformatics/bth076DOI Listing
May 2004

Phylogenetic analyses: a brief introduction to methods and their application.

Authors:
David S Horner Graziano Pesole

Expert Rev Mol Diagn 2004 May;4(3):339-50

Department of Biomolecular Sciences and Biotechnology, University of Milan, Via Celoria 26, 20133 Milano, Italy.

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http://dx.doi.org/10.1586/14737159.4.3.339DOI Listing
May 2004

Fungal hydrogenosomes contain mitochondrial heat-shock proteins.

Authors:
Mark van der Giezen Graeme M Birdsey David S Horner John Lucocq Patricia L Dyal Marlene Benchimol Christopher J Danpure T Martin Embley

Mol Biol Evol 2003 Jul 25;20(7):1051-61. Epub 2003 Apr 25.

Department of Zoology, The Natural History Museum, London, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msg103DOI Listing
July 2003

Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.

Authors:
Lucie Parenicová Stefan de Folter Martin Kieffer David S Horner Cristina Favalli Jacqueline Busscher Holly E Cook Richard M Ingram Martin M Kater Brendan Davies Gerco C Angenent Lucia Colombo

Plant Cell 2003 Jul;15(7):1538-51

Dipartimento di Biologia, Universitá degli Studi di Milano, 20133 Milan, Italy.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165399PMC
http://dx.doi.org/10.1105/tpc.011544DOI Listing
July 2003

Hydrogenosomes, mitochondria and early eukaryotic evolution.

Authors:
T Martin Embley Mark van der Giezen David S Horner Patricia L Dyal Samantha Bell Peter G Foster

IUBMB Life 2003 Jul;55(7):387-95

Department of Zoology, The Natural History Museum, London, SW7 5BD, UK.

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http://dx.doi.org/10.1080/15216540310001592834DOI Listing
July 2003

Mitochondria and hydrogenosomes are two forms of the same fundamental organelle.

Authors:
T Martin Embley Mark van der Giezen David S Horner Patricia L Dyal Peter Foster

Philos Trans R Soc Lond B Biol Sci 2003 Jan;358(1429):191-201; discussion 201-2

Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK.

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http://dx.doi.org/10.1098/rstb.2002.1190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1693103PMC
January 2003

An [Fe] hydrogenase from the anaerobic hydrogenosome-containing fungus Neocallimastix frontalis L2.

Authors:
Elizabeth A Davidson Mark van der Giezen David S Horner T Martin Embley Christopher J Howe

Gene 2002 Aug;296(1-2):45-52

Department of Biochemistry, University of Cambridge, Tennis Court Road, UK.

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http://dx.doi.org/10.1016/s0378-1119(02)00873-9DOI Listing
August 2002

Iron hydrogenases--ancient enzymes in modern eukaryotes.

Authors:
David S Horner Burkhard Heil Thomas Happe T Martin Embley

Trends Biochem Sci 2002 Mar;27(3):148-53

Dipartimento di Fisiologia e Biochimica Generali, University of Milan, via Celoria 26, 20133, Milan, Italy.

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http://dx.doi.org/10.1016/s0968-0004(01)02053-9DOI Listing
March 2002

Conserved properties of hydrogenosomal and mitochondrial ADP/ATP carriers: a common origin for both organelles.

Authors:
Mark van der Giezen Dirk Jan Slotboom David S Horner Patricia L Dyal Marilyn Harding Gang-Ping Xue T Martin Embley Edmund R S Kunji

EMBO J 2002 Feb;21(4):572-9

Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC125860PMC
http://dx.doi.org/10.1093/emboj/21.4.572DOI Listing
February 2002