David S Hibbett

David S Hibbett

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David S Hibbett

Publications by authors named "David S Hibbett"

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Evolutionary dynamics of host specialization in wood-decay fungi.

BMC Evol Biol 2018 08 3;18(1):119. Epub 2018 Aug 3.

Biology Department, Clark University, Worcester, MA, 01610, USA.

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http://dx.doi.org/10.1186/s12862-018-1229-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6091043PMC
August 2018

A revised family-level classification of the Polyporales (Basidiomycota).

Fungal Biol 2017 09 16;121(9):798-824. Epub 2017 Jun 16.

Department of Biology, Clark University, 950 Main St, Worcester, 01610, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.funbio.2017.05.010DOI Listing
September 2017

Mycophagous rove beetles highlight diverse mushrooms in the Cretaceous.

Nat Commun 2017 03 16;8:14894. Epub 2017 Mar 16.

State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China.

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http://dx.doi.org/10.1038/ncomms14894DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5357310PMC
March 2017

Unearthing the roots of ectomycorrhizal symbioses.

Nat Rev Microbiol 2016 12 31;14(12):760-773. Epub 2016 Oct 31.

Biology Department, Clark University, Lasry Center for Bioscience, 950 Main Street, Worcester, Massachusetts 01610, USA.

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http://www.nature.com/articles/nrmicro.2016.149
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http://dx.doi.org/10.1038/nrmicro.2016.149DOI Listing
December 2016

The genome of Xylona heveae provides a window into fungal endophytism.

Fungal Biol 2016 Jan 22;120(1):26-42. Epub 2015 Oct 22.

Clark University, Biology Department, 950 Main Street, Worcester, MA 01610, USA.

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http://dx.doi.org/10.1016/j.funbio.2015.10.002DOI Listing
January 2016

Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling.

Fungal Biol 2015 Aug 24;119(8):679-719. Epub 2015 Apr 24.

Department of Biology, Clark University, 950 Main St, Worcester, 01610, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.funbio.2015.04.003DOI Listing
August 2015

Towards the unification of sequence-based classification and sequence-based identification of host-associated microorganisms.

New Phytol 2015 Jan;205(1):27-31

Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, 48823, USA.

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http://dx.doi.org/10.1111/nph.13180DOI Listing
January 2015

Species delimitation in Trametes: a comparison of ITS, RPB1, RPB2 and TEF1 gene phylogenies.

Mycologia 2014 Jul-Aug;106(4):735-45. Epub 2014 Jun 4.

Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610

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http://dx.doi.org/10.3852/13-275DOI Listing
October 2014

Phylogenetic overview of the Boletineae.

Fungal Biol 2013 Jul-Aug;117(7-8):479-511. Epub 2013 May 9.

Dept. of Biology, Clark University, 950 Main St., Worcester, MA 01610, USA.

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http://www.cbs.knaw.nl/images/ResearchGroups/Phytopathology/
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http://linkinghub.elsevier.com/retrieve/pii/S187861461300067
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http://dx.doi.org/10.1016/j.funbio.2013.04.008DOI Listing
February 2014

Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes.

Mycologia 2013 Nov-Dec;105(6):1428-44. Epub 2013 Aug 6.

Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040-Madrid, Spain.

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http://www.mycologia.org/content/105/6/1428.full.pdf
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http://www.mycologia.org/cgi/doi/10.3852/13-059
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http://dx.doi.org/10.3852/13-059DOI Listing
January 2014

Toward genome-enabled mycology.

Mycologia 2013 Nov-Dec;105(6):1339-49. Epub 2013 Aug 8.

Biology Department, Clark University, Worcester, Massachusetts 01610.

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http://dx.doi.org/10.3852/13-196DOI Listing
January 2014

A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales).

Mycologia 2013 Nov-Dec;105(6):1391-411. Epub 2013 Aug 9.

US Forest Service, Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726.

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http://dx.doi.org/10.3852/13-051DOI Listing
January 2014

Phylogenetic and phylogenomic overview of the Polyporales.

Mycologia 2013 Nov-Dec;105(6):1350-73. Epub 2013 Aug 11.

Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610, and CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT, Utrecht, the Netherlands.

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http://www.mycologia.org/content/105/6/1350.full.pdf
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http://www.mycologia.org/cgi/doi/10.3852/13-003
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http://dx.doi.org/10.3852/13-003DOI Listing
January 2014

Lost branches on the tree of life.

PLoS Biol 2013 Sep 3;11(9):e1001636. Epub 2013 Sep 3.

University of Florida, Gainesville, Florida, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1001636DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3760775PMC
September 2013

Fungal systematics: is a new age of enlightenment at hand?

Nat Rev Microbiol 2013 Feb 3;11(2):129-33. Epub 2013 Jan 3.

The Biology Department, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.1038/nrmicro2963DOI Listing
February 2013

A new species of Cudonia based on morphological and molecular data.

Mycologia 2002 Jul-Aug;94(4):641-50

Department of Biology, Clark University, 950 Main Street, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.1080/15572536.2003.11833192DOI Listing
October 2012

Another fossil agaric from Dominican amber.

Mycologia 2003 Jul-Aug;95(4):685-7

Department of Biology, Clark University, 950 Main St., Worcester, Massachusetts 01610.

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http://dx.doi.org/10.1080/15572536.2004.11833071DOI Listing
October 2012

Phylogeny and genetic diversity of Bridgeoporus nobilissimus inferred using mitochondrial and nuclear rDNA sequences.

Mycologia 2003 Sep-Oct;95(5):836-45

Walla Walla College, College Place, Washington 99324.

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October 2012

Sparassis cystidiosa sp. nov. from Thailand is described using morphological and molecular data.

Mycologia 2004 Sep-Oct;96(5):1010-4

Department of Biology, San Francisco State University, 1600 Holloway Ave., San Francisco, California 94132.

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October 2012

Phylogenetic relationships of Sparassis inferred from nuclear and mitochondrial ribosomal DNA and RNA polymerase sequences.

Mycologia 2004 Sep-Oct;96(5):1015-29

Department of Biology, Clark University, 950 Main Street, Worcester, Massachusetts 01610.

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October 2012

Sutorius: a new genus for Boletus eximius.

Mycologia 2012 Jul-Aug;104(4):951-61. Epub 2012 Apr 11.

Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126, USA.

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http://www.mycologia.org/content/104/4/951.full.pdf
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http://www.mycologia.org/cgi/doi/10.3852/11-376
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http://dx.doi.org/10.3852/11-376DOI Listing
September 2012

Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota).

New Phytol 2012 Jun 3;194(4):1079-95. Epub 2012 Apr 3.

Department of Biology, Clark University, Worcester, MA 01610, USA.

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http://doi.wiley.com/10.1111/j.1469-8137.2012.04109.x
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http://dx.doi.org/10.1111/j.1469-8137.2012.04109.xDOI Listing
June 2012

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.

Science 2012 Jun;336(6089):1715-9

Biology Department, Clark University, Worcester, MA 01610, USA.

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http://as.vanderbilt.edu/rokaslab/pdfs/2012_Floudas_etal_Sci
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http://www.sciencemag.org/cgi/doi/10.1126/science.1221748
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http://dx.doi.org/10.1126/science.1221748DOI Listing
June 2012

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Proc Natl Acad Sci U S A 2012 Apr 20;109(14):5458-63. Epub 2012 Mar 20.

Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Cientificas, E-28040 Madrid, Spain.

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http://www.treesearch.fs.fed.us/pubs/download/41647.pdf
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http://www.pnas.org/cgi/doi/10.1073/pnas.1119912109
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http://dx.doi.org/10.1073/pnas.1119912109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3325662PMC
April 2012

Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot.

Mycologia 2011 May-Jun;103(3):510-24. Epub 2010 Dec 26.

Biology Department, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.3852/10-209DOI Listing
September 2011

The amsterdam declaration on fungal nomenclature.

IMA Fungus 2011 Jun 7;2(1):105-12. Epub 2011 Jun 7.

Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Plaza Ramón y Cajal, E-28040 Madrid, Spain; and Department of Botany, Natural History Museum, Cromwell Road, London SW7 5BD, UK;

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http://dx.doi.org/10.5598/imafungus.2011.02.01.14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3317370PMC
June 2011

Conservation of biotrophy in Hygrophoraceae inferred from combined stable isotope and phylogenetic analyses.

Mycologia 2011 Mar-Apr;103(2):280-90. Epub 2010 Dec 7.

Department of Biology, 950 Main Street, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.3852/10-195DOI Listing
May 2011

Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis.

Evolution 2011 May 6;65(5):1305-22. Epub 2011 Jan 6.

Department of Biology, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2010.01214.xDOI Listing
May 2011

Characterization of three mnp genes of Fomitiporia mediterranea and report of additional class II peroxidases in the order hymenochaetales.

Appl Environ Microbiol 2010 Oct 30;76(19):6431-40. Epub 2010 Jul 30.

Clark University, Department of Biology, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.1128/AEM.00547-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2950472PMC
October 2010

Amylocorticiales ord. nov. and Jaapiales ord. nov.: early diverging clades of agaricomycetidae dominated by corticioid forms.

Mycologia 2010 Jul-Aug;102(4):865-80

Clark University, Biology Department, Lasry Center for Biosciences, 15 Maywood Street, Worcester, Massachusetts 01601, USA.

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http://dx.doi.org/10.3852/09-288DOI Listing
August 2010

Convergent evolution of sequestrate forms in Amanita under Mediterranean climate conditions.

Mycologia 2010 May-Jun;102(3):675-88

Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.3852/09-191DOI Listing
July 2010

The search for the fungal tree of life.

Trends Microbiol 2009 Nov 24;17(11):488-97. Epub 2009 Sep 24.

Department of Plant Biology, University of Minnesota, St. Paul, MN 55108, USA.

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http://dx.doi.org/10.1016/j.tim.2009.08.001DOI Listing
November 2009

Fungal ecology catches fire.

New Phytol 2009 Oct;184(2):279-82

Biology Department, Clark University, Worcester, MA 01610, USA.

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http://dx.doi.org/10.1111/j.1469-8137.2009.03042.xDOI Listing
October 2009

The fungi.

Curr Biol 2009 Sep;19(18):R840-5

Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA.

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http://dx.doi.org/10.1016/j.cub.2009.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2913116PMC
September 2009

The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses.

BMC Biol 2009 Mar 10;7:13. Epub 2009 Mar 10.

Biology Department, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.1186/1741-7007-7-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660285PMC
March 2009

Molecular evolution and diversity of lignin degrading heme peroxidases in the Agaricomycetes.

J Mol Evol 2008 Mar;66(3):243-57

Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA.

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http://dx.doi.org/10.1007/s00239-008-9079-3DOI Listing
March 2008

Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha).

Mycologia 2006 Nov-Dec;98(6):829-37

Department of Biological Sciences, Louisiana State University, Baton Rouge 70803, USA.

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http://dx.doi.org/10.3852/mycologia.98.6.829DOI Listing
October 2007

A phylogenetic overview of the Agaricomycotina.

Authors:
David S Hibbett

Mycologia 2006 Nov-Dec;98(6):917-25

Biology Department, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.3852/mycologia.98.6.917DOI Listing
October 2007

Molecular systematics and biological diversification of Boletales.

Mycologia 2006 Nov-Dec;98(6):971-81

Clark University, Biology Department, Lasry Center for Bioscience, Worcester, Massachusetts 01610-1477, USA.

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http://dx.doi.org/10.3852/mycologia.98.6.971DOI Listing
October 2007

Toward a phylogenetic classification of the leotiomycetes based on rDNA data.

Mycologia 2006 Nov-Dec;98(6):1065-75

Department of Biology, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.3852/mycologia.98.6.1065DOI Listing
October 2007

Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study.

PLoS One 2007 Oct 31;2(10):e1097. Epub 2007 Oct 31.

Department of Biology, Clark University, Worcester, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0001097PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2040219PMC
October 2007

After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century.

Authors:
David S Hibbett

Mycol Res 2007 Sep 26;111(Pt 9):1001-18. Epub 2007 Jan 26.

Biology Department, Clark University, Worcester, MA 01610, USA.

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http://dx.doi.org/10.1016/j.mycres.2007.01.012DOI Listing
September 2007

Diversification of NRT2 and the origin of its fungal homolog.

Mol Biol Evol 2007 Aug 19;24(8):1731-43. Epub 2007 May 19.

Department of Biology, Clark University, MA, USA.

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http://dx.doi.org/10.1093/molbev/msm098DOI Listing
August 2007

Phylogenetic relationships of Auriculoscypha based on ultrastructural and molecular studies.

Mycol Res 2007 Mar 22;111(Pt 3):268-74. Epub 2006 Dec 22.

Department of Plant Biology, University of Minnesota, 1445 Gortner Avenue, St Paul, MN 55108-1095, USA.

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http://dx.doi.org/10.1016/j.mycres.2006.12.003DOI Listing
March 2007

Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes.

Mycologia 2006 Jul-Aug;98(4):584-92

Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China.

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http://dx.doi.org/10.3852/mycologia.98.4.584DOI Listing
December 2006

Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny.

Mol Phylogenet Evol 2006 Nov 3;41(2):295-312. Epub 2006 Jun 3.

Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA.

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http://dx.doi.org/10.1016/j.ympev.2006.05.031DOI Listing
November 2006

A new Sparassis species from Spain described using morphological and molecular data.

Mycol Res 2006 Oct 2;110(Pt 10):1227-31. Epub 2006 Oct 2.

Centro de Capacitación e Experimentación Agraria de Lourizán, Lourizán, Pontevedra, Spain.

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http://dx.doi.org/10.1016/j.mycres.2006.07.012DOI Listing
October 2006

Evolutionary relationships of Mycaureola dilseae (Agaricales), a basidiomycete pathogen of a subtidal rhodophyte.

Am J Bot 2006 Apr;93(4):547-56

Biology Department, Clark University, Lasry Science Center, 950 Main Street, Worcester, Massachusetts 01610-1477 USA;

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http://dx.doi.org/10.3732/ajb.93.4.547DOI Listing
April 2006

New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences.

Mycol Res 2005 Nov;109(Pt 11):1259-67

Kunming Institute of Botany, Chinese Academy of Sciences, Heilongtan, China.

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http://dx.doi.org/10.1017/s0953756205003758DOI Listing
November 2005

Life history and systematics of the aquatic discomycete Mitrula (Helotiales, Ascomycota) based on cultural, morphological, and molecular studies.

Am J Bot 2005 Sep;92(9):1565-74

Department of Biology, Clark University, 950 Main Street, Worcester, Massachusetts 01610 USA.

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http://dx.doi.org/10.3732/ajb.92.9.1565DOI Listing
September 2005

Automated phylogenetic taxonomy: an example in the homobasidiomycetes (mushroom-forming fungi).

Syst Biol 2005 Aug;54(4):660-8

Biology Department, Clark University, Worcester, Massachusetts 01610, USA.

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http://dx.doi.org/10.1080/10635150590947104DOI Listing
August 2005

Phylogenetic relationships of cyphelloid homobasidiomycetes.

Mol Phylogenet Evol 2004 Nov;33(2):501-15

Department Biology I and GeoBio-Center, Biodiversity Research: Systematic Mycology, Ludwig-Maximilians-University Munich, 67 Menzinger St., Munich D-80638, Germany.

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http://dx.doi.org/10.1016/j.ympev.2004.06.007DOI Listing
November 2004

Evolution of complex fruiting-body morphologies in homobasidiomycetes.

Proc Biol Sci 2002 Oct;269(1504):1963-9

Biology Department, Clark University, 950 Main Street, Worcester, MA 01610, USA.

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http://dx.doi.org/10.1098/rspb.2002.2123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1691125PMC
October 2002

When good relationships go bad.

Authors:
David S Hibbett

Nature 2002 Sep;419(6905):345-6

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http://dx.doi.org/10.1038/419345aDOI Listing
September 2002

Higher-level phylogenetic relationships of Homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions.

Mol Phylogenet Evol 2002 Jan;22(1):76-90

Department of Biology, Clark University, 950 Main St., Worcester, Massachusetts 01568, USA.

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http://dx.doi.org/10.1006/mpev.2001.1043DOI Listing
January 2002