David N Messina

David N Messina

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David N Messina

David N Messina

Publications by authors named "David N Messina"

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Discovering viral genomes in human metagenomic data by predicting unknown protein families.

Sci Rep 2018 01 8;8(1):28. Epub 2018 Jan 8.

Stockholm Bioinformatics Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-171 21, Solna, Sweden.

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http://dx.doi.org/10.1038/s41598-017-18341-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5758519PMC
January 2018

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.

Nucleic Acids Res 2010 Jan 5;38(Database issue):D196-203. Epub 2009 Nov 5.

Department of Biochemistry and Biophysics, Stockholm Bioinformatics Centre, AlbaNova University Centre, Stockholm University, SE-10691 Stockholm, Sweden.

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http://dx.doi.org/10.1093/nar/gkp931DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808972PMC
January 2010

MetaTM - a consensus method for transmembrane protein topology prediction.

BMC Bioinformatics 2009 Sep 28;10:314. Epub 2009 Sep 28.

Stockholm Bioinformatics Centre, Albanova, Stockholm University, 10691 Stockholm, Sweden.

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http://dx.doi.org/10.1186/1471-2105-10-314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2761906PMC
September 2009

DASher: a stand-alone protein sequence client for DAS, the Distributed Annotation System.

Bioinformatics 2009 May 17;25(10):1333-4. Epub 2009 Mar 17.

Stockholm Bioinformatics Centre, Stockholm University, 10691 Stockholm, Sweden.

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http://dx.doi.org/10.1093/bioinformatics/btp153DOI Listing
May 2009

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

Gene expression in pharyngeal arch 1 during human embryonic development.

Hum Mol Genet 2005 Apr 9;14(7):903-12. Epub 2005 Feb 9.

Institute of Genetic Medicine, Johns Hopkins University, 733 N. Broadway, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1093/hmg/ddi083DOI Listing
April 2005