David M Rocke

David M Rocke

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David M Rocke

Publications by authors named "David M Rocke"

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Deducing signaling pathways from parallel actions of arsenite and antimonite in human epidermal keratinocytes.

Sci Rep 2020 Feb 19;10(1):2890. Epub 2020 Feb 19.

Department of Environmental Toxicology, University of California, Davis, CA, USA.

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http://dx.doi.org/10.1038/s41598-020-59577-0DOI Listing
February 2020

Speeding Up Percolator.

J Proteome Res 2019 Sep 23;18(9):3353-3359. Epub 2019 Aug 23.

Science for Life Laboratory , KTH-Royal Institute of Technology , Solna 171 65 , Sweden.

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http://dx.doi.org/10.1021/acs.jproteome.9b00288DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6884961PMC
September 2019

Cellular versus acellular matrix devices in the treatment of diabetic foot ulcers: Interim results of a comparative efficacy randomized controlled trial.

J Tissue Eng Regen Med 2019 08 9;13(8):1430-1437. Epub 2019 May 9.

Department of Dermatology, University of California Davis Medical Center, Sacramento, California.

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https://onlinelibrary.wiley.com/doi/abs/10.1002/term.2884
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http://dx.doi.org/10.1002/term.2884DOI Listing
August 2019

Comparison of protein expression levels and proteomically-inferred genotypes using human hair from different body sites.

Forensic Sci Int Genet 2019 07 11;41:19-23. Epub 2019 Mar 11.

Forensic Science Graduate Program and Department of Environmental Toxicology, University of California, Davis, CA, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S18724973183065
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http://dx.doi.org/10.1016/j.fsigen.2019.03.009DOI Listing
July 2019

Proteomic manifestations of genetic defects in autosomal recessive congenital ichthyosis.

J Proteomics 2019 Jun 10;201:104-109. Epub 2019 Apr 10.

Department of Environmental Toxicology, University of California, Davis, CA, United States of America. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2019.04.007DOI Listing
June 2019

Learning Concave Conditional Likelihood Models for Improved Analysis of Tandem Mass Spectra.

Adv Neural Inf Process Syst 2018 Dec;31:5420-5430

Department of Public Health Sciences University of California, Davis,

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6863516PMC
December 2018

Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes.

Diabetes Care 2018 11 27;41(11):2361-2369. Epub 2018 Aug 27.

Division of Nephrology, Department of Internal Medicine, University of California, Davis, Davis, CA

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http://dx.doi.org/10.2337/dc18-0699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6196831PMC
November 2018

A Matter of Time: Faster Percolator Analysis via Efficient SVM Learning for Large-Scale Proteomics.

J Proteome Res 2018 05 6;17(5):1978-1982. Epub 2018 Apr 6.

Division of Biostatistics , University of California, Davis , Davis , California 95616 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.7b00767DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6420878PMC
May 2018

Joint-specific risk of impaired function in fibrodysplasia ossificans progressiva (FOP).

Bone 2018 04 13;109:124-133. Epub 2017 Jun 13.

Department of Orthopaedic Surgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States; Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States; The Center for Research in FOP and Related Disorders, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.bone.2017.06.009DOI Listing
April 2018

Prevalence and risk factors for kidney stones in fibrodysplasia ossificans progressiva.

Bone 2018 04 11;109:120-123. Epub 2017 Dec 11.

Department of Orthopaedic Surgery, The University of Pennsylvania School of Medicine, Philadelphia, PA 19104, United States; Department of Medicine, The University of Pennsylvania School of Medicine, Philadelphia, PA 19104, United States; The Center for Research in FOP & Related Disorders, The University of Pennsylvania School of Medicine, Philadelphia, PA 19104, United States. Electronic address:

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http://dx.doi.org/10.1016/j.bone.2017.12.010DOI Listing
April 2018

Gradients of Generative Models for Improved Discriminative Analysis of Tandem Mass Spectra.

Adv Neural Inf Process Syst 2017 Dec;30:5724-5733

Department of Public Health Sciences, University of California, Davis,

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6863505PMC
December 2017

Proteomic profiling of Pachyonychia congenita plantar callus.

J Proteomics 2017 08 23;165:132-137. Epub 2017 Jun 23.

Proteomics Core Facility, University of California, Davis, CA.

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http://dx.doi.org/10.1016/j.jprot.2017.06.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567846PMC
August 2017

Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides.

Proteomics 2017 Jul 23;17(13-14). Epub 2017 Jun 23.

Forensic Science Graduate Program and Department of Environmental Toxicology, University of California, Davis, CA, USA.

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http://dx.doi.org/10.1002/pmic.201600462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5540574PMC
July 2017

Glucose-lowering effect of whey protein depends upon clinical characteristics of patients with type 2 diabetes.

BMJ Open Diabetes Res Care 2017 7;5(1):e000420. Epub 2017 Jul 7.

Division of Endocrinology, Diabetes and Metabolism, Department of Internal Medicine, The University Of California at Davis, Sacramento, California, USA.

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http://dx.doi.org/10.1136/bmjdrc-2017-000420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530249PMC
July 2017

Proteomic Analysis of Loricrin Knockout Mouse Epidermis.

J Proteome Res 2016 08 26;15(8):2560-6. Epub 2016 Jul 26.

Department of Dermatology, Charles C. Gates Center for Regenerative Medicine, University of Colorado Anschutz Medical Campus , Aurora, Colorado 80045, United States.

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http://dx.doi.org/10.1021/acs.jproteome.6b00108DOI Listing
August 2016

Best Practices for Biostatistical Consultation and Collaboration in Academic Health Centers.

Am Stat 2016 9;70(2):187-194. Epub 2016 Jun 9.

Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5074551PMC
http://dx.doi.org/10.1080/00031305.2015.1077727DOI Listing
June 2016

Myasthenia gravis exacerbation after discontinuing mycophenolate: A single-center cohort study.

Neurology 2016 Mar 5;86(12):1159-63. Epub 2016 Feb 5.

From University of California, Davis (B.O., D.M.R., D.P.R.); and Mercy Neurological Institute (K.D.), Sacramento, CA.

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http://www.neurology.org/lookup/doi/10.1212/WNL.000000000000
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http://dx.doi.org/10.1212/WNL.0000000000002405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4820129PMC
March 2016

The Natural History of Flare-Ups in Fibrodysplasia Ossificans Progressiva (FOP): A Comprehensive Global Assessment.

J Bone Miner Res 2016 Mar 14;31(3):650-6. Epub 2015 Nov 14.

Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1002/jbmr.2728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829946PMC
March 2016

The Serum Immunoglobulin G Glycosylation Signature of Gastric Cancer.

EuPA Open Proteom 2015 Mar;6:1-9

Departments of Medicine and Microbiology & Immunology; Center for Comparative Medicine, University of California, Davis School of Medicine, Davis, CA, 95616.

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http://dx.doi.org/10.1016/j.euprot.2014.11.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4322429PMC
March 2015

Targeted therapy with MXD3 siRNA, anti-CD22 antibody and nanoparticles for precursor B-cell acute lymphoblastic leukaemia.

Br J Haematol 2014 Nov 8;167(4):487-99. Epub 2014 Sep 8.

Department of Pediatrics, University of California Davis, Sacramento, CA, USA; Stem Cell Program and Institute for Regenerative Cures, University of California Davis, Sacramento, CA, USA.

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http://dx.doi.org/10.1111/bjh.13066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4212003PMC
November 2014

Differential network analyses of Alzheimer's disease identify early events in Alzheimer's disease pathology.

Int J Alzheimers Dis 2014 23;2014:721453. Epub 2014 Jul 23.

Division of Biostatistics, School of Medicine, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1155/2014/721453DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132486PMC
August 2014

Distinguishing ichthyoses by protein profiling.

PLoS One 2013 9;8(10):e75355. Epub 2013 Oct 9.

Department of Environmental Toxicology and Forensic Science Graduate Program, University of California Davis, Davis, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075355PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3793978PMC
June 2014

Transcriptome and metabolome analysis of citrus fruit to elucidate puffing disorder.

Plant Sci 2014 Mar 14;217-218:87-98. Epub 2013 Dec 14.

Department of Plant Sciences, University of California, One Shields Avenue, Mail Stop 4, Davis, CA 95616, USA. Electronic address:

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http://dx.doi.org/10.1016/j.plantsci.2013.12.003DOI Listing
March 2014

Differentiating inbred mouse strains from each other and those with single gene mutations using hair proteomics.

PLoS One 2012 14;7(12):e51956. Epub 2012 Dec 14.

Department of Environmental Toxicology and Forensic Science Graduate Program, University of California Davis, Davis, California, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0051956PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3522583PMC
September 2013

Carbon turnover in the water-soluble protein of the adult human lens.

Mol Vis 2013 25;19:463-75. Epub 2013 Feb 25.

Department of Chemistry, University of California, One Shields Avenue, Davis, CA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3580966PMC
September 2013

Stability of miRNA in human urine supports its biomarker potential.

Biomark Med 2013 Aug;7(4):623-31

Division of Nephrology, Department of Internal Medicine, Genome & Biomedical Sciences Building, Room 6312, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.2217/bmm.13.44DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3885156PMC
August 2013

Chicken corneocyte cross-linked proteome.

J Proteome Res 2013 Feb 4;12(2):771-6. Epub 2013 Jan 4.

Department of Environmental Toxicology, University of California Davis, Davis, California 95616, USA.

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http://dx.doi.org/10.1021/pr301036kDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569041PMC
February 2013

Neurological symptoms in individuals with fibrodysplasia ossificans progressiva.

J Neurol 2012 Dec 30;259(12):2636-43. Epub 2012 Jun 30.

Department of Pediatrics, University of California San Francisco, Box 0734, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1007/s00415-012-6562-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3523705PMC
December 2012

Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation.

J Radiat Res 2012 Nov 21;53(6):860-75. Epub 2012 Aug 21.

Department of Public Health Sciences, University of California at Davis School of Medicine, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1093/jrr/rrs063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483859PMC
November 2012

Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts.

PLoS One 2012 13;7(2):e29998. Epub 2012 Feb 13.

Department of Pathology, Microbiology and Immunology, University of California Davis, School of Veterinary Medicine, Davis, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029998PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278417PMC
July 2012

Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks.

BMC Genomics 2012 May 17;13:190. Epub 2012 May 17.

Division of Biostatistics, School of Medicine, University of California, Davis, CA, USA.

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http://dx.doi.org/10.1186/1471-2164-13-190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3443446PMC
May 2012

Transcriptional response of ex vivo human skin to ionizing radiation: comparison between low- and high-dose effects.

Radiat Res 2012 Jan 26;177(1):69-83. Epub 2011 Oct 26.

Department of Public Health Sciences, University of California Davis, School of Medicine, Sacramento, California, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3549263PMC
http://dx.doi.org/10.1667/rr2524.1DOI Listing
January 2012

Expression of CD44s and CD44v6 in lung cancer and their correlation with prognostic factors.

Int J Biol Markers 2011 Jan-Mar;26(1):50-7

Department of Medical Pathology and Laboratory Medicine, University of California Davis Health System, Sacramento, CA 95817, USA.

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http://dx.doi.org/10.5301/jbm.2011.6291DOI Listing
September 2011

Neonatal salivary analysis reveals global developmental gene expression changes in the premature infant.

Clin Chem 2010 Mar 3;56(3):409-16. Epub 2009 Dec 3.

Floating Hospital for Children at Tufts Medical Center, Department of Pediatrics, Division of Newborn Medicine, 800 Washington St., Box 44, Boston, MA 02111, USA.

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http://dx.doi.org/10.1373/clinchem.2009.136234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853178PMC
March 2010

Early mortality and cardiorespiratory failure in patients with fibrodysplasia ossificans progressiva.

J Bone Joint Surg Am 2010 Mar;92(3):686-91

Department of Orthopaedic Surgery, Hospital of the University of Pennsylvania, Silverstein-2, 3400 Spruce Street, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.2106/JBJS.I.00705DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2827822PMC
March 2010

A Method to Detect Differential Gene Expression in Cross-Species Hybridization Experiments at Gene and Probe Level.

Biomed Inform Insights 2010 5;3:1-10. Epub 2010 Mar 5.

Computation Directorate, Lawrence Livermore National Laboratory, Livermore, CA.

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http://dx.doi.org/10.4137/BII.S3846DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5278677PMC
March 2010

A Method to Detect Differential Gene expression in Cross-Species Hybridization Experiments at Gene and Probe Level.

Biomed Inform Insights 2010 Mar;2010(3):1-10

Department of Statistics, University of California Davis, Davis, CA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2928260PMC
March 2010

A general-purpose baseline estimation algorithm for spectroscopic data.

Anal Chim Acta 2010 Jan;657(2):191-7

Children's Oncology Group, 440 E. Huntington Drive Suite 402, Arcadia, CA 91006, USA.

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http://dx.doi.org/10.1016/j.aca.2009.10.043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2806822PMC
January 2010

Gene regulation in parthenocarpic tomato fruit.

J Exp Bot 2009 21;60(13):3873-90. Epub 2009 Aug 21.

Department of Plant Sciences, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1093/jxb/erp227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2736898PMC
December 2009

Distinguishing mouse strains by proteomic analysis of pelage hair.

J Invest Dermatol 2009 Sep 19;129(9):2120-5. Epub 2009 Mar 19.

Department of Environmental Toxicology, University of California, Davis, California 95616-8588, USA.

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http://dx.doi.org/10.1038/jid.2009.52DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853740PMC
September 2009

Bridging the gap between systems biology and medicine.

Genome Med 2009 Sep 29;1(9):88. Epub 2009 Sep 29.

Department of Critical Care Medicine and CRISMA laboratory, University of Pittsburgh School of Medicine, Scaife 602, 3550 Terrace, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1186/gm88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2768995PMC
September 2009

Analysis of MALDI FT-ICR mass spectrometry data: a time series approach.

Anal Chim Acta 2009 Aug 5;648(2):207-14. Epub 2009 Jul 5.

Children's Oncology Group, Arcadia, CA 91006, USA.

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http://dx.doi.org/10.1016/j.aca.2009.06.064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2772212PMC
August 2009

Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data.

Bioinformatics 2009 Jan 9;25(2):251-7. Epub 2008 Dec 9.

Graduate Group in Biostatistics with a Designated Emphasis in Biotechnology, School of Medicine, University of California, Davis, CA 95616, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btn610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639011PMC
January 2009

Survival enhancing indications for coronary artery bypass graft surgery in California.

BMC Health Serv Res 2008 Dec 16;8:257. Epub 2008 Dec 16.

Division of General Internal Medicine and Center for Healthcare Policy and Research, University of California, Davis, Sacramento, CA, USA.

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http://dx.doi.org/10.1186/1472-6963-8-257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2621199PMC
December 2008

Assessing probe-specific dye and slide biases in two-color microarray data.

BMC Bioinformatics 2008 Jul 19;9:314. Epub 2008 Jul 19.

Department of Data Analysis and Algorithm, Affymetrix, Inc., Santa Clara, California, USA.

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http://dx.doi.org/10.1186/1471-2105-9-314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2496918PMC
July 2008

Baseline correction for NMR spectroscopic metabolomics data analysis.

BMC Bioinformatics 2008 Jul 29;9:324. Epub 2008 Jul 29.

Department of Applied Science, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/1471-2105-9-324DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516527PMC
July 2008

The CABG surgery volume-outcome relationship: temporal trends and selection effects in California, 1998-2004.

Health Serv Res 2008 Feb;43(1 Pt 1):174-92

Department of Pediatrics, UC Davis Children's Hospital, and Center for Health Services Research in Primary Care, 2516 Stockton Boulevard, Sacramento, CA 95817, USA.

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http://dx.doi.org/10.1111/j.1475-6773.2007.00740.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323152PMC
February 2008

Transient genome-wide transcriptional response to low-dose ionizing radiation in vivo in humans.

Int J Radiat Oncol Biol Phys 2008 Jan 8;70(1):229-34. Epub 2007 Nov 8.

Department of Radiation Oncology, University of California Davis Cancer Center, Sacramento, CA 95817, USA.

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http://dx.doi.org/10.1016/j.ijrobp.2007.09.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2754180PMC
January 2008

On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve.

BMC Bioinformatics 2007 Dec 12;8:477. Epub 2007 Dec 12.

Department of Statistics, University of California, Davis, Davis, CA, 95616, USA.

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http://dx.doi.org/10.1186/1471-2105-8-477DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2211327PMC
December 2007

Spontaneous immortalization of human epidermal cells with naturally elevated telomerase.

J Invest Dermatol 2006 Nov 15;126(11):2507-15. Epub 2006 Jun 15.

Department of Environmental Toxicology, University of California, Davis, California 95616-8588, USA.

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http://dx.doi.org/10.1038/sj.jid.5700424DOI Listing
November 2006

A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins.

J Proteome Res 2006 Oct;5(10):2800-8

Department of Chemistry, Division of Biostatistics, Graduate School of Management, Biochemistry and Molecular Medicine, University of California, Davis, California 95616, USA.

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http://pubs.acs.org/doi/abs/10.1021/pr0602949
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http://dx.doi.org/10.1021/pr0602949DOI Listing
October 2006

Human in vivo dose-response to controlled, low-dose low linear energy transfer ionizing radiation exposure.

Clin Cancer Res 2006 Jun;12(12):3723-9

Department of Radiation Oncology, University of California Davis Cancer Center, Sacramento, 95817, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-05-2625DOI Listing
June 2006

Dosimetry for quantitative analysis of the effects of low-dose ionizing radiation in radiation therapy patients.

Radiat Res 2006 Feb;165(2):240-7

Glenn T. Seaborg Institute, University of California-Lawrence Livermore National Laboratory, Livermore, California, USA.

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http://dx.doi.org/10.1667/rr3480.1DOI Listing
February 2006

A method for detection of differential gene expression in the presence of inter-individual variability in response.

Bioinformatics 2005 Nov 13;21(21):3990-2. Epub 2005 Sep 13.

Division of Biostatistics, University of California-Davis, Davis, CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti667DOI Listing
November 2005

An expression index for Affymetrix GeneChips based on the generalized logarithm.

Bioinformatics 2005 Nov 13;21(21):3983-9. Epub 2005 Sep 13.

Department of Biostatistics, Amgen, Inc. USA.

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http://dx.doi.org/10.1093/bioinformatics/bti665DOI Listing
November 2005

Iatrogenic harm caused by diagnostic errors in fibrodysplasia ossificans progressiva.

Pediatrics 2005 Nov 17;116(5):e654-61. Epub 2005 Oct 17.

Department of Pediatrics, Cardiovascular Research Institute, University of California San Francisco, California 94143, USA.

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http://dx.doi.org/10.1542/peds.2005-0469DOI Listing
November 2005

Discrimination models using variance-stabilizing transformation of metabolomic NMR data.

OMICS 2004 ;8(2):118-30

Center for Image Processing and Integrated Computing, University of California, Davis, 95616, USA.

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http://dx.doi.org/10.1089/1536231041388348DOI Listing
May 2005

Design and analysis of experiments with high throughput biological assay data.

Authors:
David M Rocke

Semin Cell Dev Biol 2004 Dec;15(6):703-13

Division of Biostatistics, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.semcdb.2004.09.007DOI Listing
December 2004

Influenza-like viral illnesses and flare-ups of fibrodysplasia ossificans progressiva.

Clin Orthop Relat Res 2004 Jun(423):275-9

Department of Orthopaedic Surgery, The University of Pennsylvania School of Medicine, Philadelphia, PA, USA.

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http://dx.doi.org/10.1097/01.blo.0000129557.38803.26DOI Listing
June 2004

Variance-stabilizing transformations for two-color microarrays.

Bioinformatics 2004 Mar 22;20(5):660-7. Epub 2004 Jan 22.

Center for Image Processing and Integrated Computing, University of California, Davis 95616, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg464DOI Listing
March 2004

Modeling uncertainty in the measurement of low-level analytes in environmental analysis.

Ecotoxicol Environ Saf 2003 Sep;56(1):78-92

Department of Applied Science and Division of Biostatistics, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/s0147-6513(03)00052-6DOI Listing
September 2003

Discriminant models for high-throughput proteomics mass spectrometer data.

Proteomics 2003 Sep;3(9):1699-703

Center for Image Processing and Integrated Computing, University of California, Davis 95616, USA.

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http://dx.doi.org/10.1002/pmic.200300518DOI Listing
September 2003

Transformation and normalization of oligonucleotide microarray data.

Bioinformatics 2003 Sep;19(14):1817-23

Department of Mathematics, Texas A&M University, College Station, TX 77843-3368, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg245DOI Listing
September 2003

Estimation of transformation parameters for microarray data.

Bioinformatics 2003 Jul;19(11):1360-7

Department of Statistics, UC Davis, Davis, CA 95616, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg178DOI Listing
July 2003

Approximate variance-stabilizing transformations for gene-expression microarray data.

Bioinformatics 2003 May;19(8):966-72

Department of Applied Science, University of California, Davis, Davis, CA 95616, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg107DOI Listing
May 2003

Improved significance test for DNA microarray data: temporal effects of shear stress on endothelial genes.

Physiol Genomics 2002 Dec 26;12(1):1-11. Epub 2002 Dec 26.

Department of Bioengineering and the Whitaker Institute of Biomedical Engineering, University of California, San Diego, La Jolla 92093-0427, USA.

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http://www.physiology.org/doi/10.1152/physiolgenomics.00024.
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http://dx.doi.org/10.1152/physiolgenomics.00024.2002DOI Listing
December 2002

Partial least squares proportional hazard regression for application to DNA microarray survival data.

Bioinformatics 2002 Dec;18(12):1625-32

Department of Statistics, Texas A&M University, College Station, TX 77843, USA.

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http://dx.doi.org/10.1093/bioinformatics/18.12.1625DOI Listing
December 2002

Multivariate survival analysis with doubly-censored data: application to the assessment of Accutane treatment for fibrodysplasia ossificans progressiva.

Stat Med 2002 Sep;21(17):2547-62

Department of Statistics, Massey University, Palmerston North, New Zealand.

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http://dx.doi.org/10.1002/sim.1123DOI Listing
September 2002

Multi-class cancer classification via partial least squares with gene expression profiles.

Bioinformatics 2002 Sep;18(9):1216-26

Department of Statistics, Texas A&M University, College Station, TX 77843, USA.

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http://dx.doi.org/10.1093/bioinformatics/18.9.1216DOI Listing
September 2002

Tumor classification by partial least squares using microarray gene expression data.

Bioinformatics 2002 Jan;18(1):39-50

Center for Image Processing and Integrated Computing, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1093/bioinformatics/18.1.39DOI Listing
January 2002