David Kulp

David Kulp

UNVERIFIED PROFILE

Are you David Kulp?   Register this Author

Register author
David Kulp

David Kulp

Publications by authors named "David Kulp"

Are you David Kulp?   Register this Author

20Publications

321Reads

28Profile Views

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.

Cell 2018 08;174(4):1015-1030.e16

Department of Genetics, Harvard Medical School, Boston, MA 02115, USA; Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cell.2018.07.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6447408PMC
August 2018

A guide to genome-wide association analysis and post-analytic interrogation.

Stat Med 2015 Dec 6;34(28):3769-92. Epub 2015 Sep 6.

Department of Mathematics and Statistics, Mount Holyoke College, South Hadley, MA, U.S.A.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/sim.6605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5019244PMC
December 2015

A novel multifunctional oligonucleotide microarray for Toxoplasma gondii.

BMC Genomics 2010 Oct 25;11:603. Epub 2010 Oct 25.

Genomics and Computational Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-11-603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017859PMC
October 2010

Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2.

BMC Genomics 2009 May 7;10:210. Epub 2009 May 7.

Department of Computer Science and Engineering, Washington University in Saint Louis, Saint Louis, MO, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-10-210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694837PMC
May 2009

Analyzing in situ gene expression in the mouse brain with image registration, feature extraction and block clustering.

BMC Bioinformatics 2007 ;8 Suppl 10:S5

Department of Computer Science, University of Massachusetts Amherst, Amherst, MA-01003, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-8-S10-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2230506PMC
April 2008

An information theoretic method for reconstructing local regulatory network modules from polymorphic samples.

Comput Syst Bioinformatics Conf 2007 ;6:133-43

Computational Biology Lab, University of Massachusetts Amherst, Amherst, MA 01002, USA.

View Article

Download full-text PDF

Source
December 2007

Genome sequence of Aedes aegypti, a major arbovirus vector.

Science 2007 Jun 17;316(5832):1718-23. Epub 2007 May 17.

Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1138878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2868357PMC
June 2007

Causal inference of regulator-target pairs by gene mapping of expression phenotypes.

BMC Genomics 2006 May 24;7:125. Epub 2006 May 24.

Bioinformatics Research Lab, Department of Computer Science, University of Massachusetts, Amherst, MA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-7-125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1481560PMC
May 2006

Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

PLoS Comput Biol 2006 Jan 20;2(1):e4. Epub 2006 Jan 20.

Department of Computer Science, Baskin School of Engineering, University of California Santa Cruz, Santa Cruz, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.0020004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1331982PMC
January 2006

Model-P: a basecalling method for resequencing microarrays of diploid samples.

Bioinformatics 2005 Sep;21 Suppl 2:ii182-9

Department of Computer Science, University of Massachusetts, Amherst, MA 01003, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bti1129DOI Listing
September 2005

Gene structure-based splice variant deconvolution using a microarray platform.

Bioinformatics 2003 ;19 Suppl 1:i315-22

Affymetrix Inc. 3450 Central Expressway, Santa Clara, CA 95051, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btg1044DOI Listing
October 2004

A knowledge-based clustering algorithm driven by Gene Ontology.

J Biopharm Stat 2004 Aug;14(3):687-700

Affymetrix, Inc, Santa Clara, CA 95051, USA.

View Article

Download full-text PDF

Source
August 2004

NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis.

Bioinformatics 2004 Jun 12;20(9):1462-3. Epub 2004 Feb 12.

Affymetrix Corporation, Bioinformatics, 6550 Vallejo Street, Suite 100, Emeryville, CA 94608, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bth087DOI Listing
June 2004

Algorithms for large-scale genotyping microarrays.

Bioinformatics 2003 Dec;19(18):2397-403

Affymetrix, Inc., 3380 Central Expressway, Santa Clara, CA 95051, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btg332DOI Listing
December 2003

Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III.

J Eukaryot Microbiol 2003 May-Jun;50(3):145-55

Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63110, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1550-7408.2003.tb00109.xDOI Listing
August 2003

NetAffx: Affymetrix probesets and annotations.

Nucleic Acids Res 2003 Jan;31(1):82-6

Department of Bioinformatics, Affymetrix, Inc, 6550 Vallejo Street, Suite 100, Emeryville, CA 94608, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165568PMC
http://dx.doi.org/10.1093/nar/gkg121DOI Listing
January 2003

Initial sequencing and comparative analysis of the mouse genome.

Authors:
Robert H Waterston Kerstin Lindblad-Toh Ewan Birney Jane Rogers Josep F Abril Pankaj Agarwal Richa Agarwala Rachel Ainscough Marina Alexandersson Peter An Stylianos E Antonarakis John Attwood Robert Baertsch Jonathon Bailey Karen Barlow Stephan Beck Eric Berry Bruce Birren Toby Bloom Peer Bork Marc Botcherby Nicolas Bray Michael R Brent Daniel G Brown Stephen D Brown Carol Bult John Burton Jonathan Butler Robert D Campbell Piero Carninci Simon Cawley Francesca Chiaromonte Asif T Chinwalla Deanna M Church Michele Clamp Christopher Clee Francis S Collins Lisa L Cook Richard R Copley Alan Coulson Olivier Couronne James Cuff Val Curwen Tim Cutts Mark Daly Robert David Joy Davies Kimberly D Delehaunty Justin Deri Emmanouil T Dermitzakis Colin Dewey Nicholas J Dickens Mark Diekhans Sheila Dodge Inna Dubchak Diane M Dunn Sean R Eddy Laura Elnitski Richard D Emes Pallavi Eswara Eduardo Eyras Adam Felsenfeld Ginger A Fewell Paul Flicek Karen Foley Wayne N Frankel Lucinda A Fulton Robert S Fulton Terrence S Furey Diane Gage Richard A Gibbs Gustavo Glusman Sante Gnerre Nick Goldman Leo Goodstadt Darren Grafham Tina A Graves Eric D Green Simon Gregory Roderic Guigó Mark Guyer Ross C Hardison David Haussler Yoshihide Hayashizaki LaDeana W Hillier Angela Hinrichs Wratko Hlavina Timothy Holzer Fan Hsu Axin Hua Tim Hubbard Adrienne Hunt Ian Jackson David B Jaffe L Steven Johnson Matthew Jones Thomas A Jones Ann Joy Michael Kamal Elinor K Karlsson Donna Karolchik Arkadiusz Kasprzyk Jun Kawai Evan Keibler Cristyn Kells W James Kent Andrew Kirby Diana L Kolbe Ian Korf Raju S Kucherlapati Edward J Kulbokas David Kulp Tom Landers J P Leger Steven Leonard Ivica Letunic Rosie Levine Jia Li Ming Li Christine Lloyd Susan Lucas Bin Ma Donna R Maglott Elaine R Mardis Lucy Matthews Evan Mauceli John H Mayer Megan McCarthy W Richard McCombie Stuart McLaren Kirsten McLay John D McPherson Jim Meldrim Beverley Meredith Jill P Mesirov Webb Miller Tracie L Miner Emmanuel Mongin Kate T Montgomery Michael Morgan Richard Mott James C Mullikin Donna M Muzny William E Nash Joanne O Nelson Michael N Nhan Robert Nicol Zemin Ning Chad Nusbaum Michael J O'Connor Yasushi Okazaki Karen Oliver Emma Overton-Larty Lior Pachter Genís Parra Kymberlie H Pepin Jane Peterson Pavel Pevzner Robert Plumb Craig S Pohl Alex Poliakov Tracy C Ponce Chris P Ponting Simon Potter Michael Quail Alexandre Reymond Bruce A Roe Krishna M Roskin Edward M Rubin Alistair G Rust Ralph Santos Victor Sapojnikov Brian Schultz Jörg Schultz Matthias S Schwartz Scott Schwartz Carol Scott Steven Seaman Steve Searle Ted Sharpe Andrew Sheridan Ratna Shownkeen Sarah Sims Jonathan B Singer Guy Slater Arian Smit Douglas R Smith Brian Spencer Arne Stabenau Nicole Stange-Thomann Charles Sugnet Mikita Suyama Glenn Tesler Johanna Thompson David Torrents Evanne Trevaskis John Tromp Catherine Ucla Abel Ureta-Vidal Jade P Vinson Andrew C Von Niederhausern Claire M Wade Melanie Wall Ryan J Weber Robert B Weiss Michael C Wendl Anthony P West Kris Wetterstrand Raymond Wheeler Simon Whelan Jamey Wierzbowski David Willey Sophie Williams Richard K Wilson Eitan Winter Kim C Worley Dudley Wyman Shan Yang Shiaw-Pyng Yang Evgeny M Zdobnov Michael C Zody Eric S Lander

Nature 2002 Dec;420(6915):520-62

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature01262DOI Listing
December 2002

Structure-based comparison of four eukaryotic genomes.

Pac Symp Biocomput 2002 :127-38

Affymetrix, Inc., 6550 Vallejo Street, Emeryville, CA 94608, USA.

View Article

Download full-text PDF

Source
http://psb.stanford.edu/psb-online/proceedings/psb02/cline.p
Web Search
October 2002