David Kleinfeld

David Kleinfeld

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David Kleinfeld

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Orofacial Movements Involve Parallel Corticobulbar Projections from Motor Cortex to Trigeminal Premotor Nuclei.

Neuron 2019 Nov 3;104(4):765-780.e3. Epub 2019 Oct 3.

Section of Neurobiology, University of California, San Diego, La Jolla, CA 92093, USA; Department of Physics, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2019.08.032DOI Listing
November 2019

Can One Concurrently Record Electrical Spikes from Every Neuron in a Mammalian Brain?

Neuron 2019 Sep 5;103(6):1005-1015. Epub 2019 Sep 5.

Howard Hughes Medical Institutes, Janelia Research Campus, Ashburn, VA, USA; Department of Bioengineering, Johns Hopkins University, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2019.08.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6763354PMC
September 2019

Direct wavefront sensing enables functional imaging of infragranular axons and spines.

Nat Methods 2019 07 17;16(7):615-618. Epub 2019 Jun 17.

Department of Physics, University of California at San Diego, La Jolla, CA, USA.

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http://www.nature.com/articles/s41592-019-0434-7
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http://dx.doi.org/10.1038/s41592-019-0434-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6763395PMC
July 2019

Awake Mouse Imaging: From Two-Photon Microscopy to Blood Oxygen Level-Dependent Functional Magnetic Resonance Imaging.

Biol Psychiatry Cogn Neurosci Neuroimaging 2019 06 12;4(6):533-542. Epub 2018 Dec 12.

Department of Radiology, University of California, San Diego, La Jolla, California; Department of Neurosciences, University of California, San Diego, La Jolla, California; Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, Charlestown.

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http://dx.doi.org/10.1016/j.bpsc.2018.12.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6556427PMC
June 2019

Functional brain stem circuits for control of nose motion.

J Neurophysiol 2019 01 21;121(1):205-217. Epub 2018 Nov 21.

Department of Physics, University of California, San Diego, La Jolla, California.

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http://dx.doi.org/10.1152/jn.00608.2018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383659PMC
January 2019

Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex.

PLoS Comput Biol 2018 11 19;14(11):e1006549. Epub 2018 Nov 19.

Department of Bioengineering, University of Illinois at Chicago, Chicago, IL, United States of America.

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http://dx.plos.org/10.1371/journal.pcbi.1006549
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http://dx.doi.org/10.1371/journal.pcbi.1006549DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6277127PMC
November 2018

Comparing two classes of biological distribution systems using network analysis.

PLoS Comput Biol 2018 09 7;14(9):e1006428. Epub 2018 Sep 7.

Department of Physics & Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6145589PMC
September 2018

Ultra-Slow Single-Vessel BOLD and CBV-Based fMRI Spatiotemporal Dynamics and Their Correlation with Neuronal Intracellular Calcium Signals.

Neuron 2018 02;97(4):925-939.e5

High-Field Magnetic Resonance Department, Max Planck Institute for Biological Cybernetics, 72076 Tuebingen, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2018.01.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5845844PMC
February 2018

Circuits in the rodent brainstem that control whisking in concert with other orofacial motor actions.

Neuroscience 2018 Jan 23;368:152-170. Epub 2017 Aug 23.

Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA; Section of Neurobiology, University of California at San Diego, La Jolla, CA 92093, USA; Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA 92093, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroscience.2017.08.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5849401PMC
January 2018

The impact of vessel size, orientation and intravascular contribution on the neurovascular fingerprint of BOLD bSSFP fMRI.

Neuroimage 2017 12 8;163:13-23. Epub 2017 Sep 8.

Department of High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tuebingen, Germany; Department of Biomedical Magnetic Resonance, University of Tuebingen, Tuebingen, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2017.09.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5857886PMC
December 2017

Entrainment of Arteriole Vasomotor Fluctuations by Neural Activity Is a Basis of Blood-Oxygenation-Level-Dependent "Resting-State" Connectivity.

Neuron 2017 Nov 26;96(4):936-948.e3. Epub 2017 Oct 26.

Department of Physics, University of California, San Diego, La Jolla, CA, USA; Section of Neurobiology, University of California, San Diego, La Jolla, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2017.10.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851777PMC
November 2017

Circuits in the Ventral Medulla That Phase-Lock Motoneurons for Coordinated Sniffing and Whisking.

Neural Plast 2016 18;2016:7493048. Epub 2016 May 18.

Section of Neurobiology, University of California, San Diego, CA 92093, USA; Department of Physics, University of California, San Diego, CA 92093, USA; Department of Electrical and Computer Engineering, University of California, San Diego, CA 92093, USA.

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http://dx.doi.org/10.1155/2016/7493048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887653PMC
September 2017

Parallel Inhibitory and Excitatory Trigemino-Facial Feedback Circuitry for Reflexive Vibrissa Movement.

Neuron 2017 Aug 20;95(3):673-682.e4. Epub 2017 Jul 20.

Department of Psychiatry and Neuroscience, Laval University, Québec City, QC G1J 2G3, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2017.06.045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5845798PMC
August 2017

Coordination of Orofacial Motor Actions into Exploratory Behavior by Rat.

Curr Biol 2017 Mar 16;27(5):688-696. Epub 2017 Feb 16.

Department of Physics, University of California, San Diego, La Jolla, CA 92093, USA; Section of Neurobiology, University of California, San Diego, La Jolla, CA 92093, USA; Department of Electrical and Computer Engineering, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2017.01.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5653531PMC
March 2017

Depth-dependent flow and pressure characteristics in cortical microvascular networks.

PLoS Comput Biol 2017 02 14;13(2):e1005392. Epub 2017 Feb 14.

Institute of Pharmacology and Toxicology, University of Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1371/journal.pcbi.1005392DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5347440PMC
February 2017

The capillary bed offers the largest hemodynamic resistance to the cortical blood supply.

J Cereb Blood Flow Metab 2017 01 10;37(1):52-68. Epub 2016 Oct 10.

Department of Bioengineering, University of Illinois at Chicago, Chicago, IL, USA

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http://dx.doi.org/10.1177/0271678X16671146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5363755PMC
January 2017

Precision mapping of the vibrissa representation within murine primary somatosensory cortex.

Philos Trans R Soc Lond B Biol Sci 2016 10;371(1705)

Department of Physics, UC San Diego, La Jolla, CA, USA Section of Neurobiology, UC San Diego, La Jolla, CA, USA Department of Electrical and Computer Engineering, UC San Diego, La Jolla, CA, USA

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http://dx.doi.org/10.1098/rstb.2015.0351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5003853PMC
October 2016

Roger Tsien 1952-2016.

Authors:
David Kleinfeld

Nat Neurosci 2016 09;19(10):1269-70

Department of Physics (primary) and Section of Neurobiology, University of California, San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nn.4410DOI Listing
September 2016

Analysis of Neuronal Spike Trains, Deconstructed.

Neuron 2016 07;91(2):221-59

Department of Physics, University of California, San Diego, San Diego, CA 92093, USA; Section of Neurobiology, University of California, San Diego, La Jolla, CA 92093, USA; Department of Electrical and Computer Engineering, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2016.05.039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4970242PMC
July 2016

Vibrissa Self-Motion and Touch Are Reliably Encoded along the Same Somatosensory Pathway from Brainstem through Thalamus.

PLoS Biol 2015 22;13(9):e1002253. Epub 2015 Sep 22.

Department of Physics, University of California, San Diego, La Jolla, California, United States of America; Section of Neurobiology, University of California, San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4579082PMC
April 2016

Inhibition, Not Excitation, Drives Rhythmic Whisking.

Neuron 2016 04 31;90(2):374-87. Epub 2016 Mar 31.

Department of Physics, University of California, San Diego, La Jolla, CA 92093, USA; Section of Neurobiology, University of California, San Diego, La Jolla, CA 92093, USA; Department of Electrical and Computer Engineering, University of California, San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1016/j.neuron.2016.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929009PMC
April 2016

The Brainstem Oscillator for Whisking and the Case for Breathing as the Master Clock for Orofacial Motor Actions.

Cold Spring Harb Symp Quant Biol 2014 15;79:29-39. Epub 2015 Apr 15.

Department of Psychiatry and Neuroscience, Laval University, Quebec City, Quebec GIJ 2G3, Canada.

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http://dx.doi.org/10.1101/sqb.2014.79.024794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4924579PMC
March 2016

Neurovascular and Immuno-Imaging: From Mechanisms to Therapies. Proceedings of the Inaugural Symposium.

Front Neurosci 2016 22;10:46. Epub 2016 Feb 22.

Department of Physiology and Biophysics, Keck School of Medicine, Zilkha Neurogenetic Institute, University of Southern California Los Angeles, CA, USA.

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http://dx.doi.org/10.3389/fnins.2016.00046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4761864PMC
March 2016

Whisking, Sniffing, and the Hippocampal θ-Rhythm: A Tale of Two Oscillators.

PLoS Biol 2016 Feb 18;14(2):e1002385. Epub 2016 Feb 18.

Department of Neurobiology, Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1371/journal.pbio.1002385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4758648PMC
February 2016

Fluorescently labeled peptide increases identification of degenerated facial nerve branches during surgery and improves functional outcome.

PLoS One 2015 9;10(3):e0119600. Epub 2015 Mar 9.

Division of Head and Neck Surgery, University of California San Diego, La Jolla, California, United States of America; Department of Pharmacology, University of California San Diego, La Jolla, California, United States of America; Moores Cancer Center, University of California San Diego, La Jolla, California, United States of America.

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http://www.tsienlab.ucsd.edu/Publications/Hussain%202015%20P
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http://dx.plos.org/10.1371/journal.pone.0119600
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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0119600PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4353702PMC
January 2016

Monitoring Integrated Activity of Individual Neurons Using FRET-Based Voltage-Sensitive Dyes.

Adv Exp Med Biol 2015 ;859:149-69

Circuit Dynamics and Connectivity Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, 20892, USA,

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http://dx.doi.org/10.1007/978-3-319-17641-3_6DOI Listing
November 2015

The Musculature That Drives Active Touch by Vibrissae and Nose in Mice.

Anat Rec (Hoboken) 2015 Jul 5;298(7):1347-58. Epub 2014 Dec 5.

Department of Neurobiology, The Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1002/ar.23102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4930880PMC
July 2015

Deflection of a vibrissa leads to a gradient of strain across mechanoreceptors in a mystacial follicle.

J Neurophysiol 2015 Jul 8;114(1):138-45. Epub 2015 Apr 8.

Department of Physics, University of California, San Diego, La Jolla, California; and Section of Neurobiology, University of California, San Diego, La Jolla, California.

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http://dx.doi.org/10.1152/jn.00179.2015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507969PMC
July 2015

Feedback in the brainstem: an excitatory disynaptic pathway for control of whisking.

J Comp Neurol 2015 Apr 30;523(6):921-42. Epub 2015 Jan 30.

Graduate Program in Neuroscience, University of California, San Diego, La Jolla, CA, 92093, USA; Department of Physics, University of California, San Diego, La Jolla, CA, 92093, USA.

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http://dx.doi.org/10.1002/cne.23724DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4329057PMC
April 2015

Muscles involved in naris dilation and nose motion in rat.

Anat Rec (Hoboken) 2015 Mar 3;298(3):546-53. Epub 2014 Oct 3.

Department of Psychiatry and Neuroscience, Faculty of Medicine, Laval University, Québec City, G1J 2G3, Canada.

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https://www.weizmann.ac.il/neurobiology/labs/ahissar/new_pag
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http://doi.wiley.com/10.1002/ar.23053
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http://dx.doi.org/10.1002/ar.23053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929008PMC
March 2015

Cell-based reporters reveal in vivo dynamics of dopamine and norepinephrine release in murine cortex.

Nat Methods 2014 Dec 26;11(12):1245-52. Epub 2014 Oct 26.

1] Department of Physics, University of California at San Diego, La Jolla, California, USA. [2] Graduate Program in Neurosciences, University of California at San Diego, La Jolla, California, USA. [3] Section of Neurobiology, University of California at San Diego, La Jolla, California, USA. [4] Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nmeth.3151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245316PMC
December 2014

Activation and measurement of free whisking in the lightly anesthetized rodent.

Nat Protoc 2014 Aug 3;9(8):1792-802. Epub 2014 Jul 3.

1] Department of Physics, University of California San Diego, La Jolla, California, USA. [2] Graduate Program in Neurosciences, University of California San Diego, La Jolla, California, USA. [3] Section of Neurobiology, University of California San Diego, La Jolla, California, USA.

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https://physics.ucsd.edu/neurophysics/publications/Jeff_Moor
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http://www.nature.com/doifinder/10.1038/nprot.2014.119
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http://dx.doi.org/10.1038/nprot.2014.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934662PMC
August 2014

How the brainstem controls orofacial behaviors comprised of rhythmic actions.

Trends Neurosci 2014 Jul 2;37(7):370-80. Epub 2014 Jun 2.

Department of Neurobiology, Duke University Medical Center, Durham, NC 27710, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tins.2014.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100695PMC
July 2014

More than a rhythm of life: breathing as a binder of orofacial sensation.

Nat Neurosci 2014 May 25;17(5):647-51. Epub 2014 Apr 25.

Department of Physics, University of California, San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nn.3693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4140942PMC
May 2014

Spectral methods for functional brain imaging.

Cold Spring Harb Protoc 2014 Mar 1;2014(3):248-62. Epub 2014 Mar 1.

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http://dx.doi.org/10.1101/pdb.top081075DOI Listing
March 2014

Mediation of muscular control of rhinarial motility in rats by the nasal cartilaginous skeleton.

Anat Rec (Hoboken) 2013 Dec 29;296(12):1821-32. Epub 2013 Oct 29.

Department of Neurobiology, the Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1002/ar.22822DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157211PMC
December 2013

ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.

Nat Neurosci 2013 Oct 1;16(10):1499-508. Epub 2013 Sep 1.

1] Department of Pharmacology, University of California, San Diego, La Jolla, California, USA. [2].

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http://dx.doi.org/10.1038/nn.3502DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3793847PMC
October 2013

Two-photon imaging of blood flow in the rat cortex.

Cold Spring Harb Protoc 2013 Aug 1;2013(8):759-67. Epub 2013 Aug 1.

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http://dx.doi.org/10.1101/pdb.prot076513DOI Listing
August 2013

The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow.

Nat Neurosci 2013 Jul 9;16(7):889-97. Epub 2013 Jun 9.

Department of Physics, University of California at San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nn.3426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141079PMC
July 2013

Hierarchy of orofacial rhythms revealed through whisking and breathing.

Nature 2013 May 28;497(7448):205-10. Epub 2013 Apr 28.

Department of Physics, University of California at San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1038/nature12076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4159559PMC
May 2013

All-optical in situ histology of brain tissue with femtosecond laser pulses.

Cold Spring Harb Protoc 2013 Apr 1;2013(4):327-34. Epub 2013 Apr 1.

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http://dx.doi.org/10.1101/pdb.prot073858DOI Listing
April 2013

The smallest stroke: occlusion of one penetrating vessel leads to infarction and a cognitive deficit.

Nat Neurosci 2013 Jan 16;16(1):55-63. Epub 2012 Dec 16.

Department of Physics, University of California at San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nn.3278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3952571PMC
January 2013

Two-photon microscopy as a tool to study blood flow and neurovascular coupling in the rodent brain.

J Cereb Blood Flow Metab 2012 Jul 1;32(7):1277-309. Epub 2012 Feb 1.

Department of Physics, University of California at San Diego, La Jolla, CA 92093-0374, USA.

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http://dx.doi.org/10.1038/jcbfm.2011.196DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3390800PMC
July 2012

Dorsorostral snout muscles in the rat subserve coordinated movement for whisking and sniffing.

Anat Rec (Hoboken) 2012 Jul 29;295(7):1181-91. Epub 2012 May 29.

Department of Neurobiology, The Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1002/ar.22501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4153473PMC
July 2012

Sniffing and whisking in rodents.

Curr Opin Neurobiol 2012 Apr 15;22(2):243-50. Epub 2011 Dec 15.

Department of Psychiatry and Neuroscience, Laval University, Québec City G1J 2G3, Canada.

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http://dx.doi.org/10.1016/j.conb.2011.11.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934665PMC
April 2012

Interferometric detection of action potentials.

Cold Spring Harb Protoc 2012 Mar 1;2012(3):307-11. Epub 2012 Mar 1.

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http://dx.doi.org/10.1101/pdb.ip068148DOI Listing
March 2012

A polished and reinforced thinned-skull window for long-term imaging of the mouse brain.

J Vis Exp 2012 Mar 7(61). Epub 2012 Mar 7.

Department of Physics, University of California-San Diego, CA, USA.

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http://dx.doi.org/10.3791/3742DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3460568PMC
March 2012

Prospect for feedback guided surgery with ultra-short pulsed laser light.

Curr Opin Neurobiol 2012 Feb 14;22(1):24-33. Epub 2011 Nov 14.

Department of Physics, University of California at San Diego, La Jolla, CA, United States.

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http://dx.doi.org/10.1016/j.conb.2011.10.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3763077PMC
February 2012

Neuronal basis for object location in the vibrissa scanning sensorimotor system.

Neuron 2011 Nov;72(3):455-68

Department of Physics and Section of Neurobiology, University of California, San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1016/j.neuron.2011.10.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3971931PMC
November 2011

Primary motor cortex reports efferent control of vibrissa motion on multiple timescales.

Neuron 2011 Oct;72(2):344-56

Computational Neuroscience Graduate Program, University of California, San Diego, San Diego, CA 92093, USA.

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http://dx.doi.org/10.1016/j.neuron.2011.09.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3717360PMC
October 2011

A guide to delineate the logic of neurovascular signaling in the brain.

Front Neuroenergetics 2011 25;3. Epub 2011 Apr 25.

Department of Physics, University of California San Diego La Jolla, CA, USA.

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http://dx.doi.org/10.3389/fnene.2011.00001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3085135PMC
July 2011

Photon counting, censor corrections, and lifetime imaging for improved detection in two-photon microscopy.

J Neurophysiol 2011 Jun 6;105(6):3106-13. Epub 2011 Apr 6.

Department of Physics, University of California at San Diego, La Jolla, CA 92093-0374, USA.

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http://dx.doi.org/10.1152/jn.00649.2010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118755PMC
June 2011

Quality metrics to accompany spike sorting of extracellular signals.

J Neurosci 2011 Jun;31(24):8699-705

Institute of Neuroscience, Technical University Munich, 80802 Munich, Germany.

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http://dx.doi.org/10.1523/JNEUROSCI.0971-11.2011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3123734PMC
June 2011

Fluctuating and sensory-induced vasodynamics in rodent cortex extend arteriole capacity.

Proc Natl Acad Sci U S A 2011 May 2;108(20):8473-8. Epub 2011 May 2.

Departments of Physics and Neurobiology and Center for Neural Circuits and Behavior, University of California, San Diego, CA 92093, USA.

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http://dx.doi.org/10.1073/pnas.1100428108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3100929PMC
May 2011

Characterizing ligand-gated ion channel receptors with genetically encoded Ca2++ sensors.

PLoS One 2011 Jan 28;6(1):e16519. Epub 2011 Jan 28.

Department of Pharmacology, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3030600PMC
January 2011

Chronic optical access through a polished and reinforced thinned skull.

Nat Methods 2010 Dec 21;7(12):981-4. Epub 2010 Oct 21.

Department of Physics, University of California at San Diego, San Diego, California, USA.

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http://dx.doi.org/10.1038/nmeth.1530DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204312PMC
December 2010

Spatio-temporally focused femtosecond laser pulses for nonreciprocal writing in optically transparent materials.

Opt Express 2010 Nov;18(24):24673-8

Center for Micro-integrated Optics for Advanced Bio-imaging and Control, Department of Physics, Colorado School of Mines, Golden, Colorado 80401, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157520PMC
http://dx.doi.org/10.1364/OE.18.024673DOI Listing
November 2010

Differential Multiphoton Laser Scanning Microscopy.

IEEE J Sel Top Quantum Electron 2012 Jan-Feb;18(1):14-28. Epub 2010 Oct 28.

Center for Microintegrated Optics for Advanced Bioimaging and Control, Department of Physics, Colorado School of Mines, Golden, CO 80401, USA.

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http://dx.doi.org/10.1109/JSTQE.2010.2077622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932844PMC
October 2010

Automatic identification of fluorescently labeled brain cells for rapid functional imaging.

J Neurophysiol 2010 Sep 7;104(3):1803-11. Epub 2010 Jul 7.

Dept. of Physics 0374, Univ. of California, 9500 Gilman Dr., La Jolla, CA 92093-0374, USA.

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http://dx.doi.org/10.1152/jn.00484.2010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2944673PMC
September 2010

Rapid determination of particle velocity from space-time images using the Radon transform.

J Comput Neurosci 2010 Aug 21;29(1-2):5-11. Epub 2009 May 21.

Department of Physics, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.

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http://dx.doi.org/10.1007/s10827-009-0159-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4962871PMC
August 2010

Temporally focused femtosecond laser pulses for low numerical aperture micromachining through optically transparent materials.

Opt Express 2010 Aug;18(17):18086-94

Center for Micro-integrated Optics for Advanced Bio-imaging and Control, Department of Physics, Colorado School of Mines, Golden, Colorado 80401, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3408926PMC
http://dx.doi.org/10.1364/OE.18.018086DOI Listing
August 2010

Topological basis for the robust distribution of blood to rodent neocortex.

Proc Natl Acad Sci U S A 2010 Jul 28;107(28):12670-5. Epub 2010 Jun 28.

Department of Physics, Division of Biology, Graduate Program in Neurosciences, and Center for Neural Circuits and Behavior, University of California, La Jolla, CA, 92093, USA.

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http://dx.doi.org/10.1073/pnas.1007239107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2906564PMC
July 2010

Optimizing the fluorescent yield in two-photon laser scanning microscopy with dispersion compensation.

Opt Express 2010 Jun;18(13):13661-72

Center for Microintegrated Optics for Advanced Bioimaging and Control, and Department of Physics, Colorado School of Mines, Golden, CO 80401, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4151303PMC
http://dx.doi.org/10.1364/OE.18.013661DOI Listing
June 2010

Severe blood-brain barrier disruption and surrounding tissue injury.

Stroke 2009 Dec 5;40(12):e666-74. Epub 2009 Nov 5.

Department of Neurosciences, University of California San Diego, School of Medicine, La Jolla, USA.

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http://dx.doi.org/10.1161/STROKEAHA.109.551341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2819286PMC
December 2009

Enter the ratrix.

Proc Natl Acad Sci U S A 2009 Nov 11;106(46):19209-10. Epub 2009 Nov 11.

Center for Neural Science, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.1073/pnas.0911424106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2780815PMC
November 2009

Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels.

J Neurosci 2009 Nov;29(46):14553-70

Department of Physics, Center for Neural Circuits and Behavior, and Graduate Program in Neurosciences, University of California, San Diego, La Jolla, California 92093, USA.

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http://www.jneurosci.org/cgi/doi/10.1523/JNEUROSCI.3287-09.2
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http://dx.doi.org/10.1523/JNEUROSCI.3287-09.2009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4972024PMC
November 2009

Acute vascular disruption and aquaporin 4 loss after stroke.

Stroke 2009 Jun 16;40(6):2182-90. Epub 2009 Apr 16.

Department of Neurosciences, UCSD School of Medicine, San Diego, CA, USA.

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http://dx.doi.org/10.1161/STROKEAHA.108.523720DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753985PMC
June 2009

Active dilation of penetrating arterioles restores red blood cell flux to penumbral neocortex after focal stroke.

J Cereb Blood Flow Metab 2009 Apr 28;29(4):738-51. Epub 2009 Jan 28.

Department of Physics, University of California at San Diego, La Jolla, California 92093-0374, USA.

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http://dx.doi.org/10.1038/jcbfm.2008.166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2893883PMC
April 2009

Phase-to-rate transformations encode touch in cortical neurons of a scanning sensorimotor system.

Nat Neurosci 2009 Apr 8;12(4):492-501. Epub 2009 Mar 8.

Division of Biological Sciences, University of California, San Diego, California, USA.

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http://dx.doi.org/10.1038/nn.2283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2863011PMC
April 2009

Plasma-mediated ablation: an optical tool for submicrometer surgery on neuronal and vascular systems.

Curr Opin Biotechnol 2009 Feb 5;20(1):90-9. Epub 2009 Mar 5.

Department of Physics, University of California at San Diego, La Jolla, CA 92093-0374, USA.

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http://dx.doi.org/10.1016/j.copbio.2009.02.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3123732PMC
February 2009

Chapter 10. In vivo measurements of blood flow and glial cell function with two-photon laser-scanning microscopy.

Methods Enzymol 2008 ;444:231-54

Department of Neurophysiology, Brain Research Institute, University of Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1016/S0076-6879(08)02810-3DOI Listing
January 2009

Advancing multifocal nonlinear microscopy: development and application of a novel multibeam Yb:KGd(WO4)2 oscillator.

Opt Express 2008 Oct;16(22):17574-84

Department of Physics, Colorado School of Mines, Golden, Colorado 80401, USA.

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http://dx.doi.org/10.1364/oe.16.017574DOI Listing
October 2008

Finding coherence in spontaneous oscillations.

Nat Neurosci 2008 Sep;11(9):991-3

Department of Physics, University of California at San Diego, La Jolla, Califorina 92093-0374, USA.

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http://dx.doi.org/10.1038/nn0908-991DOI Listing
September 2008

'Where' and 'what' in the whisker sensorimotor system.

Nat Rev Neurosci 2008 Aug;9(8):601-12

Cognitive Neuroscience Sector, International School for Advanced Studies (SISSA), 34014 Trieste, Italy.

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http://dx.doi.org/10.1038/nrn2411DOI Listing
August 2008

Texture coding in the rat whisker system: slip-stick versus differential resonance.

PLoS Biol 2008 Aug;6(8):e215

Department of Physics, University of California San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.0060215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2525689PMC
August 2008

Biomechanics of the vibrissa motor plant in rat: rhythmic whisking consists of triphasic neuromuscular activity.

J Neurosci 2008 Mar;28(13):3438-55

Division of Biological Sciences, University of California, San Diego, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1523/JNEUROSCI.5008-07.2008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6670594PMC
March 2008

Wilder Penfield in the age of YouTube: visualizing the sequential activation of sensorimotor areas across neocortex.

Neuron 2007 Dec;56(5):760-2

Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S089662730700928
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http://dx.doi.org/10.1016/j.neuron.2007.11.009DOI Listing
December 2007

Large two-photon absorptivity of hemoglobin in the infrared range of 780-880 nm.

J Chem Phys 2007 Jan;126(2):025102

Department of Physics, University of California at San Diego, La Jolla, California 92093, USA.

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http://dx.doi.org/10.1063/1.2404678DOI Listing
January 2007