David J Witherspoon

David J Witherspoon

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David J Witherspoon

David J Witherspoon

Publications by authors named "David J Witherspoon"

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30Publications

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Pedigree-based estimation of human mobile element retrotransposition rates.

Genome Res 2019 Oct;29(10):1567-1577

Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1101/gr.247965.118DOI Listing
October 2019

Discovery of rare, diagnostic Yb8/9 elements in diverse human populations.

Mob DNA 2017 27;8. Epub 2017 Jul 27.

Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT USA.

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http://dx.doi.org/10.1186/s13100-017-0093-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5531096PMC
July 2017

PADRE: Pedigree-Aware Distant-Relationship Estimation.

Am J Hum Genet 2016 07 30;99(1):154-62. Epub 2016 Jun 30.

Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.05.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5005450PMC
July 2016

Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.

Genome Biol Evol 2015 May 25;7(6):1664-75. Epub 2015 May 25.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University Department of Biological Sciences, Texas Tech University

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http://gbe.oxfordjournals.org/content/early/2015/05/25/gbe.e
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http://gbe.oxfordjournals.org/cgi/doi/10.1093/gbe/evv099
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http://dx.doi.org/10.1093/gbe/evv099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494050PMC
May 2015

Shared and unique signals of high-altitude adaptation in geographically distinct Tibetan populations.

PLoS One 2014 18;9(3):e88252. Epub 2014 Mar 18.

Research Center for High-Altitude Medicine, Qinghai University Medical School, Xining, Qinghai, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088252PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3958363PMC
December 2014

Genomic analysis of natural selection and phenotypic variation in high-altitude mongolians.

PLoS Genet 2013 18;9(7):e1003634. Epub 2013 Jul 18.

Eccles Institute of Human Genetics, University of Utah School of Medicine, Salt Lake City, Utah, USA.

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http://dx.doi.org/10.1371/journal.pgen.1003634DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715426PMC
January 2014

Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations.

Genome Res 2013 Jul 18;23(7):1170-81. Epub 2013 Apr 18.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1101/gr.148973.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3698510PMC
July 2013

Mobile element biology: new possibilities with high-throughput sequencing.

Trends Genet 2013 May 9;29(5):280-9. Epub 2013 Jan 9.

Department of Genetics, Human Genetic Institute of New Jersey, Rutgers, State University of New Jersey, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1016/j.tig.2012.12.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3938198PMC
May 2013

Metabolic insight into mechanisms of high-altitude adaptation in Tibetans.

Mol Genet Metab 2012 Jun 17;106(2):244-7. Epub 2012 Mar 17.

Research Center for High-Altitude Medicine, Qinghai University Medical School, Xining, Qinghai 810001, People's Republic of China.

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http://dx.doi.org/10.1016/j.ymgme.2012.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3437309PMC
June 2012

Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World.

BMC Genet 2012 May 20;13:39. Epub 2012 May 20.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, 15 N 2030 E Rm 2100, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1186/1471-2156-13-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432609PMC
May 2012

Genetic evidence for high-altitude adaptation in Tibet.

Science 2010 Jul 13;329(5987):72-5. Epub 2010 May 13.

Eccles Institute of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.

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http://jorde-lab.genetics.utah.edu/pub/Simonson_HAA/Simonson
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http://www.sciencemag.org/cgi/doi/10.1126/science.1189406
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http://dx.doi.org/10.1126/science.1189406DOI Listing
July 2010

Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.

BMC Genomics 2010 Jun 30;11:410. Epub 2010 Jun 30.

Dept. of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1186/1471-2164-11-410DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996938PMC
June 2010

Limited distribution of a cardiomyopathy-associated variant in India.

Ann Hum Genet 2010 Mar 18;74(2):184-8. Epub 2010 Feb 18.

Department of Human Genetics, University of Utah, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1111/j.1469-1809.2010.00561.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901538PMC
March 2010

Alu repeats increase local recombination rates.

BMC Genomics 2009 Nov 16;10:530. Epub 2009 Nov 16.

Dept. of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, Utah 84112, USA.

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http://dx.doi.org/10.1186/1471-2164-10-530DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785838PMC
November 2009

Estimating the age of retrotransposon subfamilies using maximum likelihood.

Genomics 2009 Jul 18;94(1):78-82. Epub 2009 Apr 18.

Division of Medical Genetics, University of Washington, BOX 357720, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1016/j.ygeno.2009.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703446PMC
July 2009

Fine-scaled human genetic structure revealed by SNP microarrays.

Genome Res 2009 May;19(5):815-25

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1101/gr.085589.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675970PMC
May 2009

High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays.

Genomics 2008 Dec 27;92(6):452-6. Epub 2008 Sep 27.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, 84112, USA.

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http://dx.doi.org/10.1016/j.ygeno.2008.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2659594PMC
December 2008

HapMap tagSNP transferability in multiple populations: general guidelines.

Genomics 2008 Jul 14;92(1):41-51. Epub 2008 May 14.

Department of Human Genetics, Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1016/j.ygeno.2008.03.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2471876PMC
July 2008

Mobile DNA elements in primate and human evolution.

Am J Phys Anthropol 2007 ;Suppl 45:2-19

Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1002/ajpa.20722DOI Listing
January 2008

Modeling the amplification dynamics of human Alu retrotransposons.

PLoS Comput Biol 2005 Sep 30;1(4):e44. Epub 2005 Sep 30.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, Baton Rouge, Louisiana, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.0010044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1239904PMC
September 2005

Alu elements and hominid phylogenetics.

Proc Natl Acad Sci U S A 2003 Oct 15;100(22):12787-91. Epub 2003 Oct 15.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1073/pnas.2133766100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC240696PMC
October 2003

Neutral evolution of ten types of mariner transposons in the genomes of Caenorhabditis elegans and Caenorhabditis briggsae.

J Mol Evol 2003 Jun;56(6):751-69

Department of Entomology, University of Illinois at Urban-Champaign, 320 Morrill Hall, Mc118, 505 South Goodwin, Urbana, IL 61801, USA.

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http://dx.doi.org/10.1007/s00239-002-2450-xDOI Listing
June 2003